Rroxscaffold_2G00119220

ATP synthase subunit 9, mitochondrial

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0018751
Physical Location & Seq
Forward (+)
51103309 .. 51106036
2728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00119220.1

Sequence Viewer

Length: 426 bp
ATGAAAAAGCGTGACGAGAATTCTAAAAAGGATATGTTAGAAGGAGCAAAATCAATAGGTGCCGGAGCTGCTACAATTGCTTCAGCGGGAGCTGCTATCGGTATTGGAAACGTATTCAGTTCTTTGATCCATTCTGTTGCCCGAAATCCATCATTGGCTAAACAATCATTTGGTTATGCCATTTTGGGCTTTGCTCTAACCGAAGCTATTGCATTATCACTTCGGAATGGCCATCCGATCGTCCTGGCCCTAGTCACATCGGCTCAATCAATTGGTTCTATAACCAAAGAAATAAAGTCCCTTCGAAACTTCACGGGGCTAGCAACTACTACGATGACTTTGCTGCCTCACCCAAACCCACTGCCATCTAAAGTTCCGCTTTCCTCTCTCCCGGAGACCATTCGCTTACTGAAAAAGCAGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000276 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019829 GO:0019866 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033177 GO:0034220 GO:0034641 GO:0034654 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044769 GO:0045259 GO:0045263 GO:0046034 GO:0046390 GO:0046483 GO:0046933 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0099131 GO:0099132 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016
Pfam Domains
Protein Families
ATP-synt_C

Protein Analysis

141

Amino Acids

14.73

Weight (kDa)

10.29

Isoelectric Point (pI)

35.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_C PF00137 19 - 72 6.7e-11 ATP synthase subunit C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018751)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07671 ATMG01080
rosa_chinensis RchiOBHm_MTg0498361
rosa_laevigata RLG00000000019 RLG00000000077 RLG00000000127 RLG00000000507
rosa_roxburghii Rroxscaffold_2G00119220
rosa_samantha Rh1BG019300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 59
AciI CCGC 2 cut(s) 86, 377
AclWI GGATC 1 cut(s) 121
AcoI YGGCCR 1 cut(s) 229
AcsI RAATTY 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 66
AjnI CCWGG 1 cut(s) 243
AluBI AGCT 3 cut(s) 68, 92, 206
AluI AGCT 3 cut(s) 68, 92, 206
Alw26I GTCTC 1 cut(s) 389
AlwI GGATC 1 cut(s) 121
AoxI GGCC 2 cut(s) 229, 246
ApeKI GCWGC 3 cut(s) 68, 92, 343
ApoI RAATTY 1 cut(s) 19
AspS9I GGNCC 1 cut(s) 247
AsuC2I CCSGG 1 cut(s) 392
AsuHPI GGTGA 1 cut(s) 341
AsuII TTCGAA 1 cut(s) 304
AsuNHI GCTAGC 1 cut(s) 319
BalI TGGCCA 1 cut(s) 231
BanI GGYRCC 1 cut(s) 59
BbvI GCAGC 3 cut(s) 55, 79, 330
BccI CCATC 3 cut(s) 157, 240, 373
BcgI CGANNNNNNTGC 4 cut(s) 191, 225, 322, 356
BciT130I CCWGG 1 cut(s) 245
BcnI CCSGG 1 cut(s) 392
BcoDI GTCTC 1 cut(s) 389
BfaI CTAG 2 cut(s) 251, 320
BisI GCNGC 3 cut(s) 69, 93, 344
BlsI GCNGC 3 cut(s) 70, 94, 345
Bme1390I CCNGG 2 cut(s) 245, 392
BmgT120I GGNCC 1 cut(s) 247
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 2 cut(s) 245, 392
BmtI GCTAGC 1 cut(s) 323
Bpu14I TTCGAA 1 cut(s) 304
BpuMI CCSGG 1 cut(s) 392
BsaI GGTCTC 1 cut(s) 389
BseBI CCWGG 1 cut(s) 245
BseGI GGATG 1 cut(s) 232
BseXI GCAGC 3 cut(s) 55, 79, 330
Bsh1285I CGRYCG 1 cut(s) 240
BshFI GGCC 2 cut(s) 231, 248
BshNI GGYRCC 1 cut(s) 59
BsiEI CGRYCG 1 cut(s) 240
BsiSI CCGG 2 cut(s) 63, 392
BslFI GGGAC 1 cut(s) 283
BsmAI GTCTC 1 cut(s) 389
BsmFI GGGAC 1 cut(s) 283
BsnI GGCC 2 cut(s) 231, 248
Bso31I GGTCTC 1 cut(s) 389
Bsp119I TTCGAA 1 cut(s) 304
Bsp143I GATC 2 cut(s) 126, 237
BspACI CCGC 2 cut(s) 86, 377
BspANI GGCC 2 cut(s) 231, 248
BspLI GGNNCC 1 cut(s) 61
BspOI GCTAGC 1 cut(s) 323
BspPI GGATC 1 cut(s) 121
BspT104I TTCGAA 1 cut(s) 304
BspT107I GGYRCC 1 cut(s) 59
BspTNI GGTCTC 1 cut(s) 389
BssMI GATC 2 cut(s) 126, 237
Bst2UI CCWGG 1 cut(s) 245
BstBI TTCGAA 1 cut(s) 304
BstC8I GCNNGC 1 cut(s) 321
BstF5I GGATG 1 cut(s) 232
BstKTI GATC 2 cut(s) 129, 240
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 2 cut(s) 126, 237
BstMCI CGRYCG 1 cut(s) 240
BstMWI GCNNNNNNNGC 3 cut(s) 68, 77, 92
BstNI CCWGG 1 cut(s) 245
BstSCI CCNGG 2 cut(s) 243, 390
BstV1I GCAGC 3 cut(s) 55, 79, 330
BsuRI GGCC 2 cut(s) 231, 248
BtsCI GGATG 1 cut(s) 232
BtsI GCAGTG 1 cut(s) 359
BtsIMutI CAGTG 1 cut(s) 359
Cac8I GCNNGC 1 cut(s) 321
Cfr13I GGNCC 1 cut(s) 247
CviJI RGCY 9 cut(s) 68, 92, 158, 189, 206, 231, 248, 263, 319
CviKI_1 RGCY 9 cut(s) 68, 92, 158, 189, 206, 231, 248, 263, 319
DpnI GATC 2 cut(s) 128, 239
DpnII GATC 2 cut(s) 126, 237
EaeI YGGCCR 1 cut(s) 229
Eco31I GGTCTC 1 cut(s) 389
Eco57I CTGAAG 1 cut(s) 66
EcoRI GAATTC 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 243
FaiI YATR 3 cut(s) 35, 177, 281
FalI AAGNNNNNCTT 2 cut(s) 363, 395
FaqI GGGAC 1 cut(s) 283
FauI CCCGC 1 cut(s) 79
Fnu4HI GCNGC 3 cut(s) 69, 93, 344
FokI GGATG 1 cut(s) 219
Fsp4HI GCNGC 3 cut(s) 69, 93, 344
FspBI CTAG 2 cut(s) 251, 320
GluI GCNGC 3 cut(s) 69, 93, 344
HaeIII GGCC 2 cut(s) 231, 248
HapII CCGG 2 cut(s) 63, 392
HpaII CCGG 2 cut(s) 63, 392
HphI GGTGA 1 cut(s) 341
Hpy188I TCNGA 2 cut(s) 225, 237
HpyAV CCTTC 2 cut(s) 35, 311
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 77, 92
HpySE526I ACGT 1 cut(s) 111
Kzo9I GATC 2 cut(s) 126, 237
LmnI GCTCC 3 cut(s) 44, 65, 89
LpnPI CCDG 4 cut(s) 76, 230, 257, 405
Lsp1109I GCAGC 3 cut(s) 55, 79, 330
MaeI CTAG 2 cut(s) 251, 320
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 2 cut(s) 11, 253
MalI GATC 2 cut(s) 128, 239
MboI GATC 2 cut(s) 126, 237
MfeI CAATTG 2 cut(s) 75, 270
MlsI TGGCCA 1 cut(s) 231
MluCI AATT 4 cut(s) 19, 75, 270, 421
MluNI TGGCCA 1 cut(s) 231
MnlI CCTC 2 cut(s) 357, 394
Mox20I TGGCCA 1 cut(s) 231
MscI TGGCCA 1 cut(s) 231
MseI TTAA 1 cut(s) 424
Msp20I TGGCCA 1 cut(s) 231
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 2 cut(s) 63, 392
MspR9I CCNGG 2 cut(s) 245, 392
MunI CAATTG 2 cut(s) 75, 270
MvaI CCWGG 1 cut(s) 245
MwoI GCNNNNNNNGC 3 cut(s) 68, 77, 92
NciI CCSGG 1 cut(s) 392
NdeII GATC 2 cut(s) 126, 237
NheI GCTAGC 1 cut(s) 319
NlaIV GGNNCC 1 cut(s) 61
NmuCI GTSAC 2 cut(s) 11, 253
NspV TTCGAA 1 cut(s) 304
PfoI TCCNGGA 1 cut(s) 390
PkrI GCNGC 3 cut(s) 70, 94, 345
Ple19I CGATCG 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 243
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 1 cut(s) 247
PvuI CGATCG 1 cut(s) 240
SaqAI TTAA 1 cut(s) 424
SatI GCNGC 3 cut(s) 69, 93, 344
Sau3AI GATC 2 cut(s) 126, 237
Sau96I GGNCC 1 cut(s) 247
ScrFI CCNGG 2 cut(s) 245, 392
SetI ASST 5 cut(s) 61, 70, 94, 114, 208
SfuI TTCGAA 1 cut(s) 304
Sse9I AATT 4 cut(s) 19, 75, 270, 421
SsiI CCGC 2 cut(s) 86, 377
SspMI CTAG 2 cut(s) 251, 320
StyD4I CCNGG 2 cut(s) 243, 390
TaiI ACGT 1 cut(s) 114
TaqI TCGA 1 cut(s) 304
TasI AATT 4 cut(s) 19, 75, 270, 421
Tru1I TTAA 1 cut(s) 424
Tru9I TTAA 1 cut(s) 424
TscAI CASTG 1 cut(s) 366
TseFI GTSAC 2 cut(s) 11, 253
TseI GCWGC 3 cut(s) 68, 92, 343
Tsp45I GTSAC 2 cut(s) 11, 253
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 366
XapI RAATTY 1 cut(s) 19
XspI CTAG 2 cut(s) 251, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.