RLG00000000040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Unknown
OG0021585
Physical Location & Seq
Forward (+)
237186 .. 237965
780 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000040

Sequence Viewer

Length: 480 bp
ATGGATCGTACATGGACGGTAGTTGGAGTCGGCGGCTCTCCTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGAACTACGAGATCACCCCAAGGACGCCTTCGGCATCCAGGGGTCGCGGACCGACCATAGAACCCTGTTCAATAAGCGGACCGCATTAGCTGTCCGCTTTCAGATTTTGAGAAGAGTTGCTCTTTGGAGAGCACAGTACGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTCGGCCTCTATGGTAGAATCAGTCGGGGGCCTGAGAGGCGGTAGTTTACCCTGTGGCGGATGTCAGCGGTTCGAGTCCGCTTATCTCCAACTCGCGAATTTAGCGGATACAAAGCTATATGATAGCACCCAATTTTTCCGATTCGGCAGTTCGATCTATGCTATGATTTATCATTCATGGACGTTGATAAGATCCTTCCATTTAGCAGCACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.6

Weight (kDa)

8.91

Isoelectric Point (pI)

49.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021585)

Species Orthologous Gene IDs
rosa_laevigata RLG00000000040 RLG00000000098 RLG00000030258
rosa_multiflora Rmu_sc0000498.1_g000056
rosa_roxburghii Rroxscaffold_2G00118920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 127, 359
AclWI GGATC 5 cut(s) 12, 55, 68, 84, 450
AcsI RAATTY 1 cut(s) 361
AcyI GRCGYC 1 cut(s) 105
AfaI GTAC 2 cut(s) 10, 218
AfiI CCNNNNNNNGG 3 cut(s) 56, 57, 320
AgsI TTSAA 1 cut(s) 151
AjnI CCWGG 2 cut(s) 64, 117
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AluBI AGCT 3 cut(s) 170, 235, 379
AluI AGCT 3 cut(s) 170, 235, 379
Alw21I GWGCWC 1 cut(s) 214
AlwI GGATC 5 cut(s) 12, 55, 68, 84, 450
AoxI GGCC 2 cut(s) 267, 292
ApeKI GCWGC 1 cut(s) 470
ApoI RAATTY 1 cut(s) 361
AspA2I CCTAGG 1 cut(s) 41
AspS9I GGNCC 3 cut(s) 129, 159, 292
AsuHPI GGTGA 1 cut(s) 86
AvaII GGWCC 2 cut(s) 129, 159
AvrII CCTAGG 1 cut(s) 41
BamHI GGATCC 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 214
BciT130I CCWGG 2 cut(s) 66, 119
BciVI GTATCC 1 cut(s) 364
BfaI CTAG 1 cut(s) 42
BfuI GTATCC 1 cut(s) 364
BglI GCCNNNNNGGC 1 cut(s) 300
BisI GCNGC 2 cut(s) 34, 471
BlnI CCTAGG 1 cut(s) 41
BlsI GCNGC 2 cut(s) 35, 472
Bme1390I CCNGG 2 cut(s) 66, 119
Bme18I GGWCC 2 cut(s) 129, 159
BmgT120I GGNCC 3 cut(s) 129, 159, 292
BmiI GGNNCC 3 cut(s) 48, 62, 293
BmrFI CCNGG 2 cut(s) 66, 119
BmsI GCATC 1 cut(s) 123
BsaHI GRCGYC 1 cut(s) 105
BsaJI CCNNGG 5 cut(s) 41, 64, 65, 99, 118
BsaXI ACNNNNNCTCC 2 cut(s) 241, 271
Bsc4I CCNNNNNNNGG 3 cut(s) 56, 57, 320
BseBI CCWGG 2 cut(s) 66, 119
BseDI CCNNGG 5 cut(s) 41, 64, 65, 99, 118
BseGI GGATG 2 cut(s) 114, 329
BseLI CCNNNNNNNGG 3 cut(s) 56, 57, 320
BseMII CTCAG 1 cut(s) 287
Bsh1236I CGCG 2 cut(s) 127, 359
BshFI GGCC 2 cut(s) 269, 294
BsiHKAI GWGCWC 1 cut(s) 214
BslI CCNNNNNNNGG 3 cut(s) 56, 57, 320
BsnI GGCC 2 cut(s) 269, 294
Bsp1286I GDGCHC 1 cut(s) 214
Bsp143I GATC 6 cut(s) 4, 60, 76, 91, 417, 455
Bsp68I TCGCGA 1 cut(s) 359
BspANI GGCC 2 cut(s) 269, 294
BspCNI CTCAG 1 cut(s) 288
BspFNI CGCG 2 cut(s) 127, 359
BspLI GGNNCC 3 cut(s) 48, 62, 293
BspPI GGATC 5 cut(s) 12, 55, 68, 84, 450
BssECI CCNNGG 5 cut(s) 41, 64, 65, 99, 118
BssMI GATC 6 cut(s) 4, 60, 76, 91, 417, 455
BssNI GRCGYC 1 cut(s) 105
BssT1I CCWWGG 2 cut(s) 41, 99
Bst2UI CCWGG 2 cut(s) 66, 119
Bst4CI ACNGT 2 cut(s) 19, 216
Bst6I CTCTTC 2 cut(s) 66, 187
BstACI GRCGYC 1 cut(s) 105
BstDEI CTNAG 2 cut(s) 296, 477
BstF5I GGATG 2 cut(s) 114, 329
BstFNI CGCG 2 cut(s) 127, 359
BstKTI GATC 6 cut(s) 7, 63, 79, 94, 420, 458
BstMBI GATC 6 cut(s) 4, 60, 76, 91, 417, 455
BstMWI GCNNNNNNNGC 2 cut(s) 300, 365
BstNI CCWGG 2 cut(s) 66, 119
BstSCI CCNGG 2 cut(s) 64, 117
BstUI CGCG 2 cut(s) 127, 359
BstX2I RGATCY 2 cut(s) 60, 455
BstYI RGATCY 2 cut(s) 60, 455
BsuI GTATCC 1 cut(s) 364
BsuRI GGCC 2 cut(s) 269, 294
BtsCI GGATG 2 cut(s) 114, 329
BtuMI TCGCGA 1 cut(s) 359
Cfr13I GGNCC 3 cut(s) 129, 159, 292
CpoI CGGWCCG 2 cut(s) 129, 159
CseI GACGC 1 cut(s) 113
Csp6I GTAC 2 cut(s) 9, 217
CspI CGGWCCG 2 cut(s) 129, 159
CviAII CATG 2 cut(s) 12, 441
CviJI RGCY 6 cut(s) 36, 170, 235, 269, 294, 379
CviKI_1 RGCY 6 cut(s) 36, 170, 235, 269, 294, 379
CviQI GTAC 2 cut(s) 9, 217
DdeI CTNAG 2 cut(s) 296, 477
DpnI GATC 6 cut(s) 6, 62, 78, 93, 419, 457
DpnII GATC 6 cut(s) 4, 60, 76, 91, 417, 455
Eam1104I CTCTTC 2 cut(s) 66, 187
EarI CTCTTC 2 cut(s) 66, 187
EciI GGCGGA 1 cut(s) 336
Eco130I CCWWGG 2 cut(s) 41, 99
Eco47I GGWCC 2 cut(s) 129, 159
EcoO109I RGGNCCY 1 cut(s) 292
EcoRII CCWGG 2 cut(s) 64, 117
EcoT14I CCWWGG 2 cut(s) 41, 99
ErhI CCWWGG 2 cut(s) 41, 99
FaeI CATG 2 cut(s) 15, 444
FaiI YATR 8 cut(s) 13, 138, 275, 382, 384, 423, 428, 442
FalI AAGNNNNNCTT 2 cut(s) 92, 124
FatI CATG 2 cut(s) 11, 440
Fnu4HI GCNGC 2 cut(s) 34, 471
FokI GGATG 2 cut(s) 101, 336
Fsp4HI GCNGC 2 cut(s) 34, 471
FspBI CTAG 1 cut(s) 42
GluI GCNGC 2 cut(s) 34, 471
HaeIII GGCC 2 cut(s) 269, 294
HgaI GACGC 1 cut(s) 113
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 2 cut(s) 15, 444
HinfI GANTC 4 cut(s) 27, 281, 338, 405
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 311
Hpy188I TCNGA 2 cut(s) 183, 404
Hpy188III TCNNGA 2 cut(s) 80, 358
Hpy8I GTNNAC 1 cut(s) 311
Hpy99I CGWCG 1 cut(s) 268
HpyAV CCTTC 2 cut(s) 118, 469
HpyCH4III ACNGT 2 cut(s) 19, 216
HpyCH4IV ACGT 1 cut(s) 446
HpyF10VI GCNNNNNNNGC 2 cut(s) 300, 365
HpyF3I CTNAG 2 cut(s) 296, 477
HpySE526I ACGT 1 cut(s) 446
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 2 cut(s) 15, 444
Kzo9I GATC 6 cut(s) 4, 60, 76, 91, 417, 455
LpnPI CCDG 8 cut(s) 42, 51, 78, 104, 131, 158, 308, 328
LweI GCATC 1 cut(s) 123
MaeI CTAG 1 cut(s) 42
MaeII ACGT 1 cut(s) 446
MalI GATC 6 cut(s) 6, 62, 78, 93, 419, 457
MboI GATC 6 cut(s) 4, 60, 76, 91, 417, 455
MboII GAAGA 2 cut(s) 83, 204
MflI RGATCY 2 cut(s) 60, 455
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 2 cut(s) 361, 395
MlyI GAGTC 2 cut(s) 36, 347
MmeI TCCRAC 2 cut(s) 4, 376
MnlI CCTC 4 cut(s) 61, 67, 280, 293
MspA1I CMGCKG 1 cut(s) 331
MspR9I CCNGG 2 cut(s) 66, 119
MvaI CCWGG 2 cut(s) 66, 119
MvnI CGCG 2 cut(s) 127, 359
MwoI GCNNNNNNNGC 2 cut(s) 300, 365
NdeII GATC 6 cut(s) 4, 60, 76, 91, 417, 455
NlaIII CATG 2 cut(s) 15, 444
NlaIV GGNNCC 3 cut(s) 48, 62, 293
NruI TCGCGA 1 cut(s) 359
PasI CCCWGGG 1 cut(s) 65
PfeI GAWTC 2 cut(s) 281, 405
PkrI GCNGC 2 cut(s) 35, 472
PleI GAGTC 2 cut(s) 35, 346
PpsI GAGTC 2 cut(s) 35, 346
Psp6I CCWGG 2 cut(s) 64, 117
PspGI CCWGG 2 cut(s) 64, 117
PspN4I GGNNCC 3 cut(s) 48, 62, 293
PspPI GGNCC 3 cut(s) 129, 159, 292
PsrI GAACNNNNNNTAC 2 cut(s) 223, 255
PsuI RGATCY 2 cut(s) 60, 455
RruI TCGCGA 1 cut(s) 359
RsaI GTAC 2 cut(s) 10, 218
RsaNI GTAC 2 cut(s) 9, 217
Rsr2I CGGWCCG 2 cut(s) 129, 159
RsrII CGGWCCG 2 cut(s) 129, 159
SatI GCNGC 2 cut(s) 34, 471
Sau3AI GATC 6 cut(s) 4, 60, 76, 91, 417, 455
Sau96I GGNCC 3 cut(s) 129, 159, 292
SchI GAGTC 2 cut(s) 36, 347
ScrFI CCNGG 2 cut(s) 66, 119
SduI GDGCHC 1 cut(s) 214
SetI ASST 5 cut(s) 172, 237, 381, 449, 478
SfaNI GCATC 1 cut(s) 123
SinI GGWCC 2 cut(s) 129, 159
Sse9I AATT 2 cut(s) 361, 395
SspMI CTAG 1 cut(s) 42
StyD4I CCNGG 2 cut(s) 64, 117
StyI CCWWGG 2 cut(s) 41, 99
TaaI ACNGT 2 cut(s) 19, 216
TaiI ACGT 1 cut(s) 449
TaqI TCGA 2 cut(s) 336, 416
TaqII GACCGA 1 cut(s) 146
TasI AATT 2 cut(s) 361, 395
TauI GCSGC 1 cut(s) 36
TfiI GAWTC 2 cut(s) 281, 405
TseI GCWGC 1 cut(s) 470
TspDTI ATGAA 2 cut(s) 237, 429
VpaK11BI GGWCC 2 cut(s) 129, 159
XapI RAATTY 1 cut(s) 361
XmaJI CCTAGG 1 cut(s) 41
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.