Rroxscaffold_2G00118920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0021585
Physical Location & Seq
Reverse (-)
50795603 .. 50795851
249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00118920.1

Sequence Viewer

Length: 249 bp
ATGGATCGTACATGGACGGTAGTTGGAGTCGGCGGCTCTCCTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGTTGGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGAAAAAAAATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCGGCATCCAGGGGTCGCGGACCGACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.01

Weight (kDa)

9.18

Isoelectric Point (pI)

50.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021585)

Species Orthologous Gene IDs
rosa_laevigata RLG00000000040 RLG00000000098 RLG00000030258
rosa_multiflora Rmu_sc0000498.1_g000056
rosa_roxburghii Rroxscaffold_2G00118920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 174
AccII CGCG 1 cut(s) 236
AciI CCGC 3 cut(s) 33, 139, 236
AclWI GGATC 4 cut(s) 12, 55, 68, 84
AcyI GRCGYC 1 cut(s) 214
AfaI GTAC 1 cut(s) 10
AfiI CCNNNNNNNGG 2 cut(s) 56, 57
AgsI TTSAA 1 cut(s) 121
AjnI CCWGG 2 cut(s) 64, 226
AjuI GAANNNNNNNTTGG 2 cut(s) 201, 233
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
Alw26I GTCTC 1 cut(s) 182
AlwI GGATC 4 cut(s) 12, 55, 68, 84
AoxI GGCC 1 cut(s) 85
AspA2I CCTAGG 1 cut(s) 41
AspS9I GGNCC 3 cut(s) 86, 163, 238
AsuHPI GGTGA 1 cut(s) 195
AvaII GGWCC 2 cut(s) 163, 238
AvrII CCTAGG 1 cut(s) 41
BamHI GGATCC 1 cut(s) 60
BccI CCATC 1 cut(s) 180
BciT130I CCWGG 2 cut(s) 66, 228
BcoDI GTCTC 1 cut(s) 182
BfaI CTAG 1 cut(s) 42
BisI GCNGC 2 cut(s) 34, 140
BlnI CCTAGG 1 cut(s) 41
BlsI GCNGC 2 cut(s) 35, 141
Bme1390I CCNGG 2 cut(s) 66, 228
Bme18I GGWCC 2 cut(s) 163, 238
BmgT120I GGNCC 3 cut(s) 86, 163, 238
BmiI GGNNCC 2 cut(s) 48, 62
BmrFI CCNGG 2 cut(s) 66, 228
BmsI GCATC 2 cut(s) 94, 232
BsaHI GRCGYC 1 cut(s) 214
BsaJI CCNNGG 6 cut(s) 41, 64, 65, 159, 208, 227
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 57
BseBI CCWGG 2 cut(s) 66, 228
BseDI CCNNGG 6 cut(s) 41, 64, 65, 159, 208, 227
BseGI GGATG 1 cut(s) 223
BseLI CCNNNNNNNGG 2 cut(s) 56, 57
Bsh1236I CGCG 1 cut(s) 236
BshFI GGCC 1 cut(s) 87
BslI CCNNNNNNNGG 2 cut(s) 56, 57
BsmAI GTCTC 1 cut(s) 182
BsmBI CGTCTC 1 cut(s) 182
BsnI GGCC 1 cut(s) 87
Bsp143I GATC 4 cut(s) 4, 60, 76, 200
Bsp19I CCATGG 1 cut(s) 159
BspACI CCGC 3 cut(s) 33, 139, 236
BspANI GGCC 1 cut(s) 87
BspFNI CGCG 1 cut(s) 236
BspLI GGNNCC 2 cut(s) 48, 62
BspPI GGATC 4 cut(s) 12, 55, 68, 84
BssECI CCNNGG 6 cut(s) 41, 64, 65, 159, 208, 227
BssMI GATC 4 cut(s) 4, 60, 76, 200
BssNI GRCGYC 1 cut(s) 214
BssT1I CCWWGG 3 cut(s) 41, 159, 208
Bst2UI CCWGG 2 cut(s) 66, 228
Bst4CI ACNGT 1 cut(s) 19
Bst6I CTCTTC 1 cut(s) 66
BstACI GRCGYC 1 cut(s) 214
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 223
BstFNI CGCG 1 cut(s) 236
BstKTI GATC 4 cut(s) 7, 63, 79, 203
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 4 cut(s) 4, 60, 76, 200
BstNI CCWGG 2 cut(s) 66, 228
BstSCI CCNGG 2 cut(s) 64, 226
BstUI CGCG 1 cut(s) 236
BstX2I RGATCY 1 cut(s) 60
BstYI RGATCY 1 cut(s) 60
BsuRI GGCC 1 cut(s) 87
BtgI CCRYGG 1 cut(s) 159
BtsCI GGATG 1 cut(s) 223
Cfr13I GGNCC 3 cut(s) 86, 163, 238
CpoI CGGWCCG 1 cut(s) 238
CseI GACGC 1 cut(s) 222
Csp6I GTAC 1 cut(s) 9
CspI CGGWCCG 1 cut(s) 238
CviAII CATG 2 cut(s) 12, 160
CviJI RGCY 3 cut(s) 36, 87, 100
CviKI_1 RGCY 3 cut(s) 36, 87, 100
CviQI GTAC 1 cut(s) 9
DpnI GATC 4 cut(s) 6, 62, 78, 202
DpnII GATC 4 cut(s) 4, 60, 76, 200
DrdI GACNNNNNNGTC 1 cut(s) 174
DseDI GACNNNNNNGTC 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco130I CCWWGG 3 cut(s) 41, 159, 208
Eco47I GGWCC 2 cut(s) 163, 238
EcoRII CCWGG 2 cut(s) 64, 226
EcoT14I CCWWGG 3 cut(s) 41, 159, 208
ErhI CCWWGG 3 cut(s) 41, 159, 208
Esp3I CGTCTC 1 cut(s) 182
FaeI CATG 2 cut(s) 15, 163
FaiI YATR 3 cut(s) 13, 161, 247
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FatI CATG 2 cut(s) 11, 159
Fnu4HI GCNGC 2 cut(s) 34, 140
FokI GGATG 1 cut(s) 210
Fsp4HI GCNGC 2 cut(s) 34, 140
FspBI CTAG 1 cut(s) 42
GluI GCNGC 2 cut(s) 34, 140
HaeIII GGCC 1 cut(s) 87
HgaI GACGC 1 cut(s) 222
Hin1I GRCGYC 1 cut(s) 214
Hin1II CATG 2 cut(s) 15, 163
HinfI GANTC 1 cut(s) 27
HphI GGTGA 1 cut(s) 195
HpyAV CCTTC 2 cut(s) 127, 227
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4V TGCA 1 cut(s) 107
Hsp92I GRCGYC 1 cut(s) 214
Hsp92II CATG 2 cut(s) 15, 163
Kzo9I GATC 4 cut(s) 4, 60, 76, 200
LpnPI CCDG 5 cut(s) 42, 51, 78, 213, 240
LweI GCATC 2 cut(s) 94, 232
MaeI CTAG 1 cut(s) 42
MalI GATC 4 cut(s) 6, 62, 78, 202
MboI GATC 4 cut(s) 4, 60, 76, 200
MboII GAAGA 1 cut(s) 83
MflI RGATCY 1 cut(s) 60
MlyI GAGTC 1 cut(s) 36
MmeI TCCRAC 1 cut(s) 4
MnlI CCTC 2 cut(s) 61, 67
MspR9I CCNGG 2 cut(s) 66, 228
MvaI CCWGG 2 cut(s) 66, 228
MvnI CGCG 1 cut(s) 236
NcoI CCATGG 1 cut(s) 159
NdeII GATC 4 cut(s) 4, 60, 76, 200
NlaIII CATG 2 cut(s) 15, 163
NlaIV GGNNCC 2 cut(s) 48, 62
PasI CCCWGGG 1 cut(s) 65
PkrI GCNGC 2 cut(s) 35, 141
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
Psp6I CCWGG 2 cut(s) 64, 226
PspGI CCWGG 2 cut(s) 64, 226
PspN4I GGNNCC 2 cut(s) 48, 62
PspPI GGNCC 3 cut(s) 86, 163, 238
PsuI RGATCY 1 cut(s) 60
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
Rsr2I CGGWCCG 1 cut(s) 238
RsrII CGGWCCG 1 cut(s) 238
SatI GCNGC 2 cut(s) 34, 140
Sau3AI GATC 4 cut(s) 4, 60, 76, 200
Sau96I GGNCC 3 cut(s) 86, 163, 238
SchI GAGTC 1 cut(s) 36
ScrFI CCNGG 2 cut(s) 66, 228
SetI ASST 1 cut(s) 102
SfaNI GCATC 2 cut(s) 94, 232
SinI GGWCC 2 cut(s) 163, 238
SsiI CCGC 3 cut(s) 33, 139, 236
SspMI CTAG 1 cut(s) 42
StyD4I CCNGG 2 cut(s) 64, 226
StyI CCWWGG 3 cut(s) 41, 159, 208
TaaI ACNGT 1 cut(s) 19
TaqII GACCGA 1 cut(s) 180
TauI GCSGC 2 cut(s) 36, 142
VpaK11BI GGWCC 2 cut(s) 163, 238
XmaJI CCTAGG 1 cut(s) 41
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.