RLG00000030258

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0021585
Physical Location & Seq
Forward (+)
58512839 .. 58513625
787 bp
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UTR
Exon/CDS
Intron
RLM00000030258

Sequence Viewer

Length: 465 bp
ATGATATACTGCAGTGATGATTTTGGAACCTCTCATCTGATATACCCCATCGTCTCCACCCCGCAAGAACTACGAGATCACCCCAAGGACGCCTTCGGCATCCAGGGGTCACAGACAGACCATAGAACCCTGTTCAATAAGCGAACCGCATTAGCTGTCCGCTTTCAGCTAGATCCTCCGAAACCACAAGAATCCTTAGTTAGAATGGGATTCCAACTCAACACCTTTCCTATTTTTTTTGAGATTTTGAGAAGAGTTTCTCTTTGGAGAGCACAGTACAATGAAAGTTGTAAGCTGTGTTCGGGGGGGTGTTATTGTCTATCGTCAGCCTCTATGGTAGAATCAGTCGGGGGCCTGAGAGGCGGTAGTTTACCCTGTGGCGGATATCAGCTGTTCGAGTCCGCTTATCTCCAACTCGCGAATTTAGCGGATACAAAGCTATATGATAGCACCCAATTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.32

Weight (kDa)

6.8

Isoelectric Point (pI)

44.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021585)

Species Orthologous Gene IDs
rosa_laevigata RLG00000000040 RLG00000000098 RLG00000030258
rosa_multiflora Rmu_sc0000498.1_g000056
rosa_roxburghii Rroxscaffold_2G00118920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 419
AciI CCGC 7 cut(s) 62, 147, 160, 363, 381, 402, 428
AclWI GGATC 1 cut(s) 167
AcsI RAATTY 1 cut(s) 421
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 1 cut(s) 278
AfiI CCNNNNNNNGG 1 cut(s) 380
AgsI TTSAA 1 cut(s) 136
AjnI CCWGG 1 cut(s) 102
AjuI GAANNNNNNNTTGG 2 cut(s) 77, 109
AluBI AGCT 5 cut(s) 155, 169, 295, 391, 439
AluI AGCT 5 cut(s) 155, 169, 295, 391, 439
Alw21I GWGCWC 1 cut(s) 274
Alw26I GTCTC 1 cut(s) 58
AlwI GGATC 1 cut(s) 167
AoxI GGCC 1 cut(s) 352
ApoI RAATTY 1 cut(s) 421
Asp700I GAANNNNTTC 1 cut(s) 256
AspS9I GGNCC 1 cut(s) 352
AsuHPI GGTGA 1 cut(s) 71
Bbv12I GWGCWC 1 cut(s) 274
BccI CCATC 1 cut(s) 56
BciT130I CCWGG 1 cut(s) 104
BciVI GTATCC 1 cut(s) 424
BcoDI GTCTC 1 cut(s) 58
BfaI CTAG 1 cut(s) 170
BfmI CTRYAG 1 cut(s) 10
BfuI GTATCC 1 cut(s) 424
BglI GCCNNNNNGGC 1 cut(s) 360
Bme1390I CCNGG 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 352
BmiI GGNNCC 2 cut(s) 28, 353
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 1 cut(s) 108
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 84, 103
Bsc4I CCNNNNNNNGG 1 cut(s) 380
BseBI CCWGG 1 cut(s) 104
BseDI CCNNGG 2 cut(s) 84, 103
BseGI GGATG 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 380
BseMII CTCAG 1 cut(s) 347
Bsh1236I CGCG 1 cut(s) 419
BshFI GGCC 1 cut(s) 354
BsiHKAI GWGCWC 1 cut(s) 274
BslI CCNNNNNNNGG 1 cut(s) 380
BsmAI GTCTC 1 cut(s) 58
BsmBI CGTCTC 1 cut(s) 58
BsnI GGCC 1 cut(s) 354
Bsp1286I GDGCHC 1 cut(s) 274
Bsp143I GATC 2 cut(s) 76, 172
Bsp68I TCGCGA 1 cut(s) 419
BspACI CCGC 7 cut(s) 62, 147, 160, 363, 381, 402, 428
BspANI GGCC 1 cut(s) 354
BspCNI CTCAG 1 cut(s) 348
BspFNI CGCG 1 cut(s) 419
BspLI GGNNCC 2 cut(s) 28, 353
BspMAI CTGCAG 1 cut(s) 14
BspPI GGATC 1 cut(s) 167
BssECI CCNNGG 2 cut(s) 84, 103
BssMI GATC 2 cut(s) 76, 172
BssNI GRCGYC 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 1 cut(s) 276
Bst6I CTCTTC 1 cut(s) 247
BstACI GRCGYC 1 cut(s) 90
BstDEI CTNAG 2 cut(s) 196, 356
BstF5I GGATG 1 cut(s) 99
BstFNI CGCG 1 cut(s) 419
BstKTI GATC 2 cut(s) 79, 175
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 2 cut(s) 76, 172
BstMWI GCNNNNNNNGC 2 cut(s) 360, 425
BstNI CCWGG 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 102
BstSFI CTRYAG 1 cut(s) 10
BstUI CGCG 1 cut(s) 419
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BsuI GTATCC 1 cut(s) 424
BsuRI GGCC 1 cut(s) 354
BtsCI GGATG 1 cut(s) 99
BtsI GCAGTG 1 cut(s) 19
BtsIMutI CAGTG 1 cut(s) 19
BtuMI TCGCGA 1 cut(s) 419
Cfr13I GGNCC 1 cut(s) 352
CseI GACGC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 277
CviJI RGCY 7 cut(s) 155, 169, 295, 329, 354, 391, 439
CviKI_1 RGCY 7 cut(s) 155, 169, 295, 329, 354, 391, 439
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 2 cut(s) 196, 356
DpnI GATC 2 cut(s) 78, 174
DpnII GATC 2 cut(s) 76, 172
Eam1104I CTCTTC 1 cut(s) 247
EarI CTCTTC 1 cut(s) 247
EciI GGCGGA 1 cut(s) 396
Eco130I CCWWGG 1 cut(s) 84
Eco32I GATATC 1 cut(s) 386
EcoO109I RGGNCCY 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 102
EcoRV GATATC 1 cut(s) 386
EcoT14I CCWWGG 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
Esp3I CGTCTC 1 cut(s) 58
FaiI YATR 6 cut(s) 7, 43, 123, 335, 442, 444
FalI AAGNNNNNCTT 2 cut(s) 77, 109
FauI CCCGC 1 cut(s) 69
FokI GGATG 1 cut(s) 86
FspBI CTAG 1 cut(s) 170
HaeIII GGCC 1 cut(s) 354
HgaI GACGC 1 cut(s) 98
Hin1I GRCGYC 1 cut(s) 90
HinfI GANTC 4 cut(s) 191, 210, 341, 398
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 1 cut(s) 371
Hpy188I TCNGA 3 cut(s) 39, 180, 464
Hpy188III TCNNGA 1 cut(s) 418
Hpy8I GTNNAC 1 cut(s) 371
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 276
HpyCH4V TGCA 1 cut(s) 12
HpyF10VI GCNNNNNNNGC 2 cut(s) 360, 425
HpyF3I CTNAG 2 cut(s) 196, 356
Hsp92I GRCGYC 1 cut(s) 90
Kzo9I GATC 2 cut(s) 76, 172
LpnPI CCDG 5 cut(s) 89, 116, 143, 368, 388
LweI GCATC 1 cut(s) 108
MaeI CTAG 1 cut(s) 170
MaeIII GTNAC 1 cut(s) 108
MalI GATC 2 cut(s) 78, 174
MboI GATC 2 cut(s) 76, 172
MboII GAAGA 1 cut(s) 264
MflI RGATCY 1 cut(s) 172
MhlI GDGCHC 1 cut(s) 274
MluCI AATT 2 cut(s) 421, 455
MlyI GAGTC 1 cut(s) 407
MmeI TCCRAC 2 cut(s) 238, 436
MnlI CCTC 4 cut(s) 40, 186, 340, 353
MroXI GAANNNNTTC 1 cut(s) 256
MspA1I CMGCKG 1 cut(s) 391
MspR9I CCNGG 1 cut(s) 104
MvaI CCWGG 1 cut(s) 104
MvnI CGCG 1 cut(s) 419
MwoI GCNNNNNNNGC 2 cut(s) 360, 425
NdeII GATC 2 cut(s) 76, 172
NlaIV GGNNCC 2 cut(s) 28, 353
NmuCI GTSAC 1 cut(s) 108
NruI TCGCGA 1 cut(s) 419
PdmI GAANNNNTTC 1 cut(s) 256
PfeI GAWTC 3 cut(s) 191, 210, 341
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
Psp6I CCWGG 1 cut(s) 102
PspGI CCWGG 1 cut(s) 102
PspN4I GGNNCC 2 cut(s) 28, 353
PspPI GGNCC 1 cut(s) 352
PsrI GAACNNNNNNTAC 2 cut(s) 283, 315
PstI CTGCAG 1 cut(s) 14
PsuI RGATCY 1 cut(s) 172
PvuII CAGCTG 1 cut(s) 391
RruI TCGCGA 1 cut(s) 419
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
Sau3AI GATC 2 cut(s) 76, 172
Sau96I GGNCC 1 cut(s) 352
SchI GAGTC 1 cut(s) 407
ScrFI CCNGG 1 cut(s) 104
SduI GDGCHC 1 cut(s) 274
SetI ASST 7 cut(s) 32, 157, 171, 227, 297, 393, 441
SfaNI GCATC 1 cut(s) 108
SfcI CTRYAG 1 cut(s) 10
Sse9I AATT 2 cut(s) 421, 455
SsiI CCGC 7 cut(s) 62, 147, 160, 363, 381, 402, 428
SspMI CTAG 1 cut(s) 170
StyD4I CCNGG 1 cut(s) 102
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 276
TaqI TCGA 1 cut(s) 396
TasI AATT 2 cut(s) 421, 455
TatI WGTACW 1 cut(s) 276
TfiI GAWTC 3 cut(s) 191, 210, 341
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 1 cut(s) 108
Tsp45I GTSAC 1 cut(s) 108
TspDTI ATGAA 1 cut(s) 297
TspRI CASTG 1 cut(s) 19
XapI RAATTY 1 cut(s) 421
XmnI GAANNNNTTC 1 cut(s) 256
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.