Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0018544

Physical Location & Seq

Genomic Coordinates Reverse (-)

5259983 .. 5261119

Gene Structure 1137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000775

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTGTTTGAGGAACAGCTCGCAGTGCTACTCGTTACTTCTGGGCAGAAGGTGCAGAGGCTGCTTTGAGTCTTGCCAGGGCAATGCTTGGATTCTACCCTGTGAGGGTGTTGCCTCTAAGACAGCTATTGCACCTGTTAACCCATCATACTTGCCTCCGGTTTCTCAAGCTGATGTTAAGCTCTTTTTTGAATCAGTTTGTGGAGAGGTTTATCGTATGACGCTGCTGGGAGACTATCACCCTTTTATCGATGATGTCCAGAATAACTATATTTGTTTTGTTAATCTATTGTATCTGACGAACTCTGGTTTGGCCCTTGACACCTCTATCAGAGGTGTTTGGTACAATTCGTCTCAATACTTCTCATGGACTCCTCCTGCTAATCCTCCTCCCTTCCTTATAGAAAGGATTAATCGACGACGACAACAACAATGTGATCGATGCCGGTTTGGGAAGGCAGAGCCGAATAGAGAATGGGTAACTAATTCAATTTCTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2 RRM_1

Protein Analysis

167

Amino Acids

18.99

Weight (kDa)

8.56

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018544)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0352911 RchiOBHm_Chr1g0352921 RchiOBHm_Chr6g0246511
rosa_laevigata	RLG00000000775 RLG00000015251
rosa_roxburghii	Rroxscaffold_3G00221210 Rroxscaffold_7G00214550
rosa_rugosa	Rorug01G0243900.1 Rorug01G0244100
rosa_samantha	Rh4CG230600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	2 cut(s)	191, 489
AjnI	CCWGG	1 cut(s)	75
AjuI	GAANNNNNNNTTGG	2 cut(s)	293, 325
AluBI	AGCT	4 cut(s)	18, 125, 170, 181
AluI	AGCT	4 cut(s)	18, 125, 170, 181
Alw26I	GTCTC	2 cut(s)	225, 357
AlwNI	CAGNNNCTG	1 cut(s)	60
AoxI	GGCC	1 cut(s)	312
ApeKI	GCWGC	2 cut(s)	60, 223
AseI	ATTAAT	1 cut(s)	411
AspS9I	GGNCC	1 cut(s)	313
AsuHPI	GGTGA	1 cut(s)	230
BbvI	GCAGC	2 cut(s)	47, 210
BccI	CCATC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	77
BcoDI	GTCTC	2 cut(s)	225, 357
BisI	GCNGC	2 cut(s)	61, 224
BlsI	GCNGC	2 cut(s)	62, 225
Bme1390I	CCNGG	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	313
BmrFI	CCNGG	1 cut(s)	77
BmsI	GCATC	1 cut(s)	431
BpuEI	CTTGAG	1 cut(s)	150
Bsa29I	ATCGAT	2 cut(s)	249, 439
BsaJI	CCNNGG	1 cut(s)	76
BsaWI	WCCGGW	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse118I	RCCGGY	1 cut(s)	444
Bse3DI	GCAATG	1 cut(s)	88
BseBI	CCWGG	1 cut(s)	77
BseCI	ATCGAT	2 cut(s)	249, 439
BseDI	CCNNGG	1 cut(s)	76
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMI	GCAATG	1 cut(s)	88
BseRI	GAGGAG	2 cut(s)	363, 378
BseXI	GCAGC	2 cut(s)	47, 210
BseYI	CCCAGC	1 cut(s)	226
BsgI	GTGCAG	1 cut(s)	73
BshFI	GGCC	1 cut(s)	314
BshVI	ATCGAT	2 cut(s)	249, 439
BsiSI	CCGG	2 cut(s)	158, 445
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmAI	GTCTC	2 cut(s)	225, 357
BsmBI	CGTCTC	1 cut(s)	357
BsnI	GGCC	1 cut(s)	314
Bsp143I	GATC	1 cut(s)	436
BspANI	GGCC	1 cut(s)	314
BspDI	ATCGAT	2 cut(s)	249, 439
BsrDI	GCAATG	1 cut(s)	88
BsrFI	RCCGGY	1 cut(s)	444
BssAI	RCCGGY	1 cut(s)	444
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	1 cut(s)	436
Bst2UI	CCWGG	1 cut(s)	77
BstAPI	GCANNNNNTGC	2 cut(s)	51, 60
BstC8I	GCNNGC	1 cut(s)	20
BstDEI	CTNAG	1 cut(s)	117
BstKTI	GATC	1 cut(s)	439
BstMAI	GTCTC	2 cut(s)	225, 357
BstMBI	GATC	1 cut(s)	436
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 51, 60
BstNI	CCWGG	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	47, 210
Bsu15I	ATCGAT	2 cut(s)	249, 439
BsuRI	GGCC	1 cut(s)	314
BsuTUI	ATCGAT	2 cut(s)	249, 439
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	29
Cac8I	GCNNGC	1 cut(s)	20
CaiI	CAGNNNCTG	1 cut(s)	60
Cfr10I	RCCGGY	1 cut(s)	444
Cfr13I	GGNCC	1 cut(s)	313
ClaI	ATCGAT	2 cut(s)	249, 439
CseI	GACGC	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	1 cut(s)	366
CviJI	RGCY	7 cut(s)	18, 60, 125, 170, 181, 314, 463
CviKI_1	RGCY	7 cut(s)	18, 60, 125, 170, 181, 314, 463
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	1 cut(s)	438
DpnII	GATC	1 cut(s)	436
EcoRII	CCWGG	1 cut(s)	75
Esp3I	CGTCTC	1 cut(s)	357
FaeI	CATG	1 cut(s)	369
FaiI	YATR	5 cut(s)	148, 218, 270, 367, 401
FatI	CATG	1 cut(s)	365
Fnu4HI	GCNGC	2 cut(s)	61, 224
Fsp4HI	GCNGC	2 cut(s)	61, 224
GluI	GCNGC	2 cut(s)	61, 224
GsaI	CCCAGC	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	314
HapII	CCGG	2 cut(s)	158, 445
HgaI	GACGC	1 cut(s)	229
Hin1II	CATG	1 cut(s)	369
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HinfI	GANTC	4 cut(s)	68, 91, 191, 370
HpaI	GTTAAC	1 cut(s)	139
HpaII	CCGG	2 cut(s)	158, 445
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	2 cut(s)	297, 332
Hpy188III	TCNNGA	1 cut(s)	259
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	2 cut(s)	420, 423
HpyAV	CCTTC	3 cut(s)	42, 403, 448
HpyCH4V	TGCA	2 cut(s)	54, 131
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 51, 60
HpyF3I	CTNAG	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	369
KspAI	GTTAAC	1 cut(s)	139
Kzo9I	GATC	1 cut(s)	436
Lsp1109I	GCAGC	2 cut(s)	47, 210
LweI	GCATC	1 cut(s)	431
MaeIII	GTNAC	2 cut(s)	33, 478
MalI	GATC	1 cut(s)	438
MboI	GATC	1 cut(s)	436
MluCI	AATT	3 cut(s)	346, 484, 489
MlyI	GAGTC	2 cut(s)	77, 364
MseI	TTAA	4 cut(s)	138, 177, 282, 411
MspI	CCGG	2 cut(s)	158, 445
MspR9I	CCNGG	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	77
MwoI	GCNNNNNNNGC	3 cut(s)	24, 51, 60
NdeII	GATC	1 cut(s)	436
NlaIII	CATG	1 cut(s)	369
PfeI	GAWTC	2 cut(s)	91, 191
PkrI	GCNGC	2 cut(s)	62, 225
PleI	GAGTC	2 cut(s)	76, 364
PpsI	GAGTC	2 cut(s)	76, 364
PshBI	ATTAAT	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	75
PspFI	CCCAGC	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	313
PstNI	CAGNNNCTG	1 cut(s)	60
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
SaqAI	TTAA	4 cut(s)	138, 177, 282, 411
SatI	GCNGC	2 cut(s)	61, 224
Sau3AI	GATC	1 cut(s)	436
Sau96I	GGNCC	1 cut(s)	313
SchI	GAGTC	2 cut(s)	77, 364
ScrFI	CCNGG	1 cut(s)	77
SetI	ASST	9 cut(s)	20, 53, 127, 136, 172, 183, 210, 326, 337
SfaNI	GCATC	1 cut(s)	431
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
Sse9I	AATT	3 cut(s)	346, 484, 489
StyD4I	CCNGG	1 cut(s)	75
TaqI	TCGA	3 cut(s)	249, 415, 439
TasI	AATT	3 cut(s)	346, 484, 489
TfiI	GAWTC	2 cut(s)	91, 191
Tru1I	TTAA	4 cut(s)	138, 177, 282, 411
Tru9I	TTAA	4 cut(s)	138, 177, 282, 411
TscAI	CASTG	1 cut(s)	29
TseI	GCWGC	2 cut(s)	60, 223
TspRI	CASTG	1 cut(s)	29
VspI	ATTAAT	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.