Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0020548

Physical Location & Seq

Genomic Coordinates Forward (+)

9376833 .. 9377467

Gene Structure 635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001026

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGATGCAGCAGCAACAAGAAAAACATTTGGATTTTGAAGAACCACCAAGTAGCAGCTGGGCGAGTCTATTGATTCATCACCTTCCAGAAGGCATTCCTGAAGAGTCCCTGTTCCTGTTACTGTCCCACTATGGTGCTTCTTCTGTTCACTCGTGCTCTCCTGCCGGCAGGCTGAGGTTTCTTGGGAAGGTGTTAAAAGTGGAGAGGTCTACTAGCAATAGTAGTAAGCCATTGCAGGATGGCAAGAAGGATTCGGTTTCTGTGCCTCCCACTTCCACATCATCTTTGGGGTACAATCCTTACATCAAAAGGGAGACTCAAGAAACTGAAGTTTTAAGATCAGAGCCTATGGCCCAAGGCTTGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009987 GO:0010229 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0022414 GO:0030626 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090567 GO:0097157 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

123

Amino Acids

13.52

Weight (kDa)

6.19

Isoelectric Point (pI)

70.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0020548)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0076741
rosa_laevigata	RLG00000001026 RLG00000014765
rosa_samantha	Rh2DG322500 Rh5AG241600 Rh5CG272900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	361
AccI	GTMKAC	1 cut(s)	209
AcuI	CTGAAG	2 cut(s)	120, 348
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	1 cut(s)	361
AgsI	TTSAA	1 cut(s)	38
AleI	CACNNNNGTG	1 cut(s)	132
AluBI	AGCT	1 cut(s)	57
AluI	AGCT	1 cut(s)	57
Alw21I	GWGCWC	1 cut(s)	158
Alw26I	GTCTC	1 cut(s)	308
AoxI	GGCC	1 cut(s)	351
ApeKI	GCWGC	3 cut(s)	7, 10, 54
Asp700I	GAANNNNTTC	1 cut(s)	93
AspS9I	GGNCC	1 cut(s)	352
AsuHPI	GGTGA	1 cut(s)	71
BauI	CACGAG	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	158
BbvCI	CCTCAGC	1 cut(s)	173
BbvI	GCAGC	3 cut(s)	19, 22, 66
BccI	CCATC	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	1 cut(s)	213
BisI	GCNGC	3 cut(s)	8, 11, 55
BlsI	GCNGC	3 cut(s)	9, 12, 56
BmgT120I	GGNCC	1 cut(s)	352
Bpu10I	CCTNAGC	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
Bse118I	RCCGGY	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseMI	GCAATG	1 cut(s)	230
BseMII	CTCAG	1 cut(s)	164
BseXI	GCAGC	3 cut(s)	19, 22, 66
BseYI	CCCAGC	1 cut(s)	57
BshFI	GGCC	1 cut(s)	353
BsiHKAI	GWGCWC	1 cut(s)	158
BsiSI	CCGG	1 cut(s)	165
BslFI	GGGAC	2 cut(s)	91, 109
BslI	CCNNNNNNNGG	1 cut(s)	361
BsmAI	GTCTC	1 cut(s)	308
BsmFI	GGGAC	2 cut(s)	91, 109
BsmI	GAATGC	1 cut(s)	93
BsnI	GGCC	1 cut(s)	353
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp143I	GATC	1 cut(s)	338
BspANI	GGCC	1 cut(s)	353
BspCNI	CTCAG	1 cut(s)	165
BsrDI	GCAATG	1 cut(s)	230
BsrFI	RCCGGY	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	1 cut(s)	338
BssSI	CACGAG	1 cut(s)	151
BssT1I	CCWWGG	1 cut(s)	355
Bst2BI	CACGAG	1 cut(s)	151
Bst4CI	ACNGT	1 cut(s)	123
Bst6I	CTCTTC	1 cut(s)	96
BstC8I	GCNNGC	2 cut(s)	166, 170
BstDEI	CTNAG	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	244
BstKTI	GATC	1 cut(s)	341
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	1 cut(s)	338
BstV1I	GCAGC	3 cut(s)	19, 22, 66
BsuRI	GGCC	1 cut(s)	353
BtsCI	GGATG	1 cut(s)	244
Cac8I	GCNNGC	2 cut(s)	166, 170
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	1 cut(s)	352
Csp6I	GTAC	1 cut(s)	292
CviJI	RGCY	6 cut(s)	57, 172, 229, 346, 353, 360
CviKI_1	RGCY	6 cut(s)	57, 172, 229, 346, 353, 360
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	1 cut(s)	173
DpnI	GATC	1 cut(s)	340
DpnII	GATC	1 cut(s)	338
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	355
Eco57I	CTGAAG	2 cut(s)	120, 348
EcoT14I	CCWWGG	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	355
FaiI	YATR	2 cut(s)	132, 350
FaqI	GGGAC	2 cut(s)	91, 109
FblI	GTMKAC	1 cut(s)	209
Fnu4HI	GCNGC	3 cut(s)	8, 11, 55
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	3 cut(s)	8, 11, 55
FspBI	CTAG	1 cut(s)	213
GluI	GCNGC	3 cut(s)	8, 11, 55
GsaI	CCCAGC	1 cut(s)	61
HaeIII	GGCC	1 cut(s)	353
HapII	CCGG	1 cut(s)	165
HinfI	GANTC	5 cut(s)	64, 73, 104, 251, 316
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	2 cut(s)	148, 210
Hpy188I	TCNGA	1 cut(s)	343
Hpy188III	TCNNGA	3 cut(s)	86, 98, 320
Hpy8I	GTNNAC	2 cut(s)	148, 210
HpyAV	CCTTC	4 cut(s)	83, 92, 181, 241
HpyCH4III	ACNGT	1 cut(s)	123
HpyCH4V	TGCA	2 cut(s)	7, 235
HpyF3I	CTNAG	1 cut(s)	173
KroI	GCCGGC	1 cut(s)	164
KroNI	GCCGGC	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	338
LpnPI	CCDG	9 cut(s)	43, 99, 111, 122, 128, 154, 174, 178, 221
Lsp1109I	GCAGC	3 cut(s)	19, 22, 66
MaeI	CTAG	1 cut(s)	213
MaeIII	GTNAC	1 cut(s)	117
MalI	GATC	1 cut(s)	340
MboI	GATC	1 cut(s)	338
MboII	GAAGA	3 cut(s)	50, 113, 132
MhlI	GDGCHC	1 cut(s)	158
MlyI	GAGTC	3 cut(s)	73, 113, 310
MnlI	CCTC	3 cut(s)	168, 198, 276
MroNI	GCCGGC	1 cut(s)	164
MroXI	GAANNNNTTC	1 cut(s)	93
MseI	TTAA	2 cut(s)	194, 335
MslI	CAYNNNNRTG	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	57
MspI	CCGG	1 cut(s)	165
Mva1269I	GAATGC	1 cut(s)	93
NaeI	GCCGGC	1 cut(s)	166
NdeII	GATC	1 cut(s)	338
NgoMIV	GCCGGC	1 cut(s)	164
OliI	CACNNNNGTG	1 cut(s)	132
PctI	GAATGC	1 cut(s)	93
PdiI	GCCGGC	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	93
PfeI	GAWTC	2 cut(s)	73, 251
PflMI	CCANNNNNTGG	1 cut(s)	361
PkrI	GCNGC	3 cut(s)	9, 12, 56
PleI	GAGTC	3 cut(s)	72, 112, 310
PpsI	GAGTC	3 cut(s)	72, 112, 310
PspFI	CCCAGC	1 cut(s)	57
PspPI	GGNCC	1 cut(s)	352
PvuII	CAGCTG	1 cut(s)	57
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
RseI	CAYNNNNRTG	1 cut(s)	132
SaqAI	TTAA	2 cut(s)	194, 335
SatI	GCNGC	3 cut(s)	8, 11, 55
Sau3AI	GATC	1 cut(s)	338
Sau96I	GGNCC	1 cut(s)	352
SchI	GAGTC	3 cut(s)	73, 113, 310
SduI	GDGCHC	1 cut(s)	158
SetI	ASST	5 cut(s)	59, 84, 179, 192, 209
SmiMI	CAYNNNNRTG	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	318
SmoI	CTYRAG	1 cut(s)	318
SspMI	CTAG	1 cut(s)	213
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	1 cut(s)	123
TfiI	GAWTC	2 cut(s)	73, 251
Tru1I	TTAA	2 cut(s)	194, 335
Tru9I	TTAA	2 cut(s)	194, 335
TseI	GCWGC	3 cut(s)	7, 10, 54
TspDTI	ATGAA	1 cut(s)	65
Van91I	CCANNNNNTGG	1 cut(s)	361
XcmI	CCANNNNNNNNNTGG	2 cut(s)	54, 283
XmiI	GTMKAC	1 cut(s)	209
XmnI	GAANNNNTTC	1 cut(s)	93
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.