Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0020548

Physical Location & Seq

Genomic Coordinates Forward (+)

57325209 .. 57327056

Gene Structure 1848 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014765

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGATCTTCTACAGGGAAAAGCGTAAGCTCGCCGGTGGAAAGTGTACTAGCCTGAACCAACAAATTTCACCTTCAATCTCCGTGTTCGACCAAATCCATATCTCAATTTCGAGACTTGAGATGATGCAGCAGCAACAAGAAAAACATTTGGGTTTTGAAGAACAACCAAGTACCAATTGGGCGAGTCTATTGATTCATCACATTCCAGAAGGCATTCCTGAAGAGTCCCTGTTCCTGTTATTATCCCAACATGGTGCTTTTTCTGTTCGCTCGTGCTCTCCTACCGGCAGGATGAGAAATTGTGCCTTCATGGATTTCCAAAATGAAGGCTTGGCTTACCAAGCACAGCGTCAGTTGAATGGGCTGAGATTTCTTGGGAAGGTGTTAAAAGTGGAGAGGTCTACTAGCAATAGTGGTAAGCCATTGCAAGATGGCAAGAAAGATTCGATTACTGCTTTCCTCCTCACCTTAATTGTTCGGCGCTTCTCCAGAGCTTATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009987 GO:0010229 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0022414 GO:0030626 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090567 GO:0097157 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

168

Amino Acids

19.05

Weight (kDa)

9.62

Isoelectric Point (pI)

54.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	64 - 130	1.5e-08	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0020548)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0076741
rosa_laevigata	RLG00000001026 RLG00000014765
rosa_samantha	Rh2DG322500 Rh5AG241600 Rh5CG272900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	401
AcsI	RAATTY	1 cut(s)	63
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	2 cut(s)	46, 172
AgsI	TTSAA	3 cut(s)	75, 158, 358
AluBI	AGCT	2 cut(s)	28, 494
AluI	AGCT	2 cut(s)	28, 494
Alw21I	GWGCWC	1 cut(s)	278
Alw26I	GTCTC	1 cut(s)	106
ApeKI	GCWGC	2 cut(s)	127, 130
ApoI	RAATTY	1 cut(s)	63
Asp700I	GAANNNNTTC	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	483
AsuHPI	GGTGA	2 cut(s)	60, 457
BauI	CACGAG	1 cut(s)	271
Bbv12I	GWGCWC	1 cut(s)	278
BbvI	GCAGC	2 cut(s)	139, 142
BccI	CCATC	1 cut(s)	425
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	2 cut(s)	48, 405
BfmI	CTRYAG	1 cut(s)	10
BfoI	RGCGCY	1 cut(s)	484
BisI	GCNGC	2 cut(s)	128, 131
BlsI	GCNGC	2 cut(s)	129, 132
BmsI	GCATC	1 cut(s)	114
BpmI	CTGGAG	1 cut(s)	472
BpuEI	CTTGAG	1 cut(s)	137
Bse118I	RCCGGY	2 cut(s)	32, 284
Bse3DI	GCAATG	1 cut(s)	422
BseGI	GGATG	1 cut(s)	297
BseMI	GCAATG	1 cut(s)	422
BseMII	CTCAG	1 cut(s)	356
BseRI	GAGGAG	1 cut(s)	452
BseXI	GCAGC	2 cut(s)	139, 142
BsiHKAI	GWGCWC	1 cut(s)	278
BsiSI	CCGG	2 cut(s)	33, 285
BslFI	GGGAC	1 cut(s)	211
BsmAI	GTCTC	1 cut(s)	106
BsmFI	GGGAC	1 cut(s)	211
BsmI	GAATGC	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp143I	GATC	1 cut(s)	3
BspCNI	CTCAG	1 cut(s)	357
BsrDI	GCAATG	1 cut(s)	422
BsrFI	RCCGGY	2 cut(s)	32, 284
BssAI	RCCGGY	2 cut(s)	32, 284
BssMI	GATC	1 cut(s)	3
BssSI	CACGAG	1 cut(s)	271
Bst2BI	CACGAG	1 cut(s)	271
Bst6I	CTCTTC	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	365
BstF5I	GGATG	1 cut(s)	297
BstH2I	RGCGCY	1 cut(s)	484
BstHHI	GCGC	1 cut(s)	483
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstSFI	CTRYAG	1 cut(s)	10
BstV1I	GCAGC	2 cut(s)	139, 142
BtsCI	GGATG	1 cut(s)	297
Cac8I	GCNNGC	1 cut(s)	30
CfoI	GCGC	1 cut(s)	483
Cfr10I	RCCGGY	2 cut(s)	32, 284
CseI	GACGC	1 cut(s)	338
Csp6I	GTAC	2 cut(s)	45, 171
CviAII	CATG	2 cut(s)	251, 310
CviJI	RGCY	7 cut(s)	28, 51, 330, 335, 364, 421, 494
CviKI_1	RGCY	7 cut(s)	28, 51, 330, 335, 364, 421, 494
CviQI	GTAC	2 cut(s)	45, 171
DdeI	CTNAG	1 cut(s)	365
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco57I	CTGAAG	1 cut(s)	240
FaeI	CATG	2 cut(s)	254, 313
FaiI	YATR	3 cut(s)	99, 252, 311
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	2 cut(s)	250, 309
FblI	GTMKAC	1 cut(s)	401
Fnu4HI	GCNGC	2 cut(s)	128, 131
FokI	GGATG	1 cut(s)	304
Fsp4HI	GCNGC	2 cut(s)	128, 131
FspBI	CTAG	2 cut(s)	48, 405
GlaI	GCGC	1 cut(s)	482
GluI	GCNGC	2 cut(s)	128, 131
GsuI	CTGGAG	1 cut(s)	472
HaeII	RGCGCY	1 cut(s)	484
HapII	CCGG	2 cut(s)	33, 285
HgaI	GACGC	1 cut(s)	338
HhaI	GCGC	1 cut(s)	483
Hin1II	CATG	2 cut(s)	254, 313
Hin6I	GCGC	1 cut(s)	481
HinP1I	GCGC	1 cut(s)	481
HinfI	GANTC	4 cut(s)	184, 193, 224, 443
HpaII	CCGG	2 cut(s)	33, 285
HphI	GGTGA	2 cut(s)	60, 457
Hpy166II	GTNNAC	2 cut(s)	45, 402
Hpy188III	TCNNGA	4 cut(s)	111, 206, 218, 489
Hpy8I	GTNNAC	2 cut(s)	45, 402
HpyAV	CCTTC	5 cut(s)	81, 203, 316, 320, 373
HpyCH4V	TGCA	2 cut(s)	127, 427
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
HpyF3I	CTNAG	1 cut(s)	365
Hsp92II	CATG	2 cut(s)	254, 313
HspAI	GCGC	1 cut(s)	481
Kzo9I	GATC	1 cut(s)	3
LpnPI	CCDG	8 cut(s)	46, 65, 219, 231, 242, 248, 274, 298
Lsp1109I	GCAGC	2 cut(s)	139, 142
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	2 cut(s)	48, 405
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	2 cut(s)	170, 233
MfeI	CAATTG	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	5 cut(s)	63, 105, 175, 298, 471
MlyI	GAGTC	2 cut(s)	193, 233
MnlI	CCTC	3 cut(s)	390, 470, 473
MroXI	GAANNNNTTC	1 cut(s)	213
MseI	TTAA	2 cut(s)	386, 470
MspI	CCGG	2 cut(s)	33, 285
MunI	CAATTG	1 cut(s)	175
Mva1269I	GAATGC	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	341
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	2 cut(s)	254, 313
PctI	GAATGC	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	2 cut(s)	193, 443
PkrI	GCNGC	2 cut(s)	129, 132
PleI	GAGTC	2 cut(s)	192, 232
PpsI	GAGTC	2 cut(s)	192, 232
RsaI	GTAC	2 cut(s)	46, 172
RsaNI	GTAC	2 cut(s)	45, 171
SaqAI	TTAA	2 cut(s)	386, 470
SatI	GCNGC	2 cut(s)	128, 131
Sau3AI	GATC	1 cut(s)	3
SchI	GAGTC	2 cut(s)	193, 233
SduI	GDGCHC	1 cut(s)	278
SetI	ASST	6 cut(s)	30, 73, 384, 401, 470, 496
SfaNI	GCATC	1 cut(s)	114
SfcI	CTRYAG	1 cut(s)	10
SgrAI	CRCCGGYG	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	5 cut(s)	63, 105, 175, 298, 471
SspMI	CTAG	2 cut(s)	48, 405
TaqI	TCGA	3 cut(s)	87, 110, 446
TasI	AATT	5 cut(s)	63, 105, 175, 298, 471
TatI	WGTACW	1 cut(s)	44
TfiI	GAWTC	2 cut(s)	193, 443
Tru1I	TTAA	2 cut(s)	386, 470
Tru9I	TTAA	2 cut(s)	386, 470
TseI	GCWGC	2 cut(s)	127, 130
TspDTI	ATGAA	3 cut(s)	185, 298, 339
TspGWI	ACGGA	1 cut(s)	70
XapI	RAATTY	1 cut(s)	63
XcmI	CCANNNNNNNNNTGG	1 cut(s)	174
XmiI	GTMKAC	1 cut(s)	401
XmnI	GAANNNNTTC	1 cut(s)	213
XspI	CTAG	2 cut(s)	48, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.