Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0020548

Physical Location & Seq

Genomic Coordinates Reverse (-)

29465532 .. 29466320

Gene Structure 789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG272900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGATGCAGCAGCAACAAGACCAACATTTGGGTTTTGAAGAACCACCAAGTAGCAGCAGGGCGAGTCTATTGATTCGTCACCTTCCAGAAGGCATTCCTGAAGAGACCCTGTTCCGGTTACTGTCCCACTATGGTGCTTCTTCTGTTCGCTCTTGCTCTCCCACCGGCAGGATGAGAAATTGTGCCTTCGTGGATTTCCAACATGAAGGCTTGGCTTACCAAGCACAGCGTCAGTTGAATGGGCTGAGGTTTCTTGAGAAGGTGTTGAAAGTGGAGAGGGCTACTAGCAATAGTGGTAAGCCATTGCAGGATGGCAAGAAGGATTCGTTTTCTGTGCCTCCCACTTCCACATCATCTTCCGGGTATGCTTACCCACCACCAGATAGAAATATTCTGACCAACATTGTAAATGCTCTTATTGCTGTTCGTCACTTTAATACTCAGGTTCTCTCCAATCTCATGCATAGCTACTGTAACAGTATCCTTCAACTCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009987 GO:0010229 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0022414 GO:0030626 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090567 GO:0097157 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

165

Amino Acids

18.44

Weight (kDa)

8.88

Isoelectric Point (pI)

60.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	23 - 89	5.6e-10	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0020548)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0076741
rosa_laevigata	RLG00000001026 RLG00000014765
rosa_samantha	Rh2DG322500 Rh5AG241600 Rh5CG272900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	28
AcuI	CTGAAG	1 cut(s)	120
AfiI	CCNNNNNNNGG	3 cut(s)	28, 114, 168
AgsI	TTSAA	4 cut(s)	38, 238, 268, 488
AleI	CACNNNNGTG	1 cut(s)	132
AluBI	AGCT	1 cut(s)	468
AluI	AGCT	1 cut(s)	468
Alw26I	GTCTC	1 cut(s)	98
ApeKI	GCWGC	3 cut(s)	7, 10, 54
Asp700I	GAANNNNTTC	1 cut(s)	93
AsuC2I	CCSGG	1 cut(s)	361
AsuHPI	GGTGA	1 cut(s)	71
BbvCI	CCTCAGC	1 cut(s)	245
BbvI	GCAGC	3 cut(s)	19, 22, 66
BccI	CCATC	1 cut(s)	305
BciVI	GTATCC	1 cut(s)	491
BcnI	CCSGG	1 cut(s)	361
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	1 cut(s)	285
BfuI	GTATCC	1 cut(s)	491
BisI	GCNGC	3 cut(s)	8, 11, 55
BlsI	GCNGC	3 cut(s)	9, 12, 56
Bme1390I	CCNGG	1 cut(s)	361
BmrFI	CCNGG	1 cut(s)	361
Bpu10I	CCTNAGC	1 cut(s)	245
BpuEI	CTTGAG	1 cut(s)	275
BpuMI	CCSGG	1 cut(s)	361
BsaI	GGTCTC	1 cut(s)	98
BsaWI	WCCGGW	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 114, 168
Bse118I	RCCGGY	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	302
BseGI	GGATG	2 cut(s)	177, 316
BseLI	CCNNNNNNNGG	3 cut(s)	28, 114, 168
BseMI	GCAATG	1 cut(s)	302
BseMII	CTCAG	2 cut(s)	236, 455
BseXI	GCAGC	3 cut(s)	19, 22, 66
BsiSI	CCGG	3 cut(s)	115, 165, 360
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	3 cut(s)	28, 114, 168
BsmAI	GTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	109
BsmI	GAATGC	1 cut(s)	93
Bso31I	GGTCTC	1 cut(s)	98
BspCNI	CTCAG	2 cut(s)	237, 454
BspTNI	GGTCTC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	302
BsrFI	RCCGGY	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	164
Bst4CI	ACNGT	3 cut(s)	123, 473, 479
Bst6I	CTCTTC	1 cut(s)	96
BstDEI	CTNAG	2 cut(s)	245, 441
BstF5I	GGATG	2 cut(s)	177, 316
BstMAI	GTCTC	1 cut(s)	98
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 419
BstSCI	CCNGG	1 cut(s)	359
BstV1I	GCAGC	3 cut(s)	19, 22, 66
BsuI	GTATCC	1 cut(s)	491
BtsCI	GGATG	2 cut(s)	177, 316
Cfr10I	RCCGGY	1 cut(s)	164
CseI	GACGC	1 cut(s)	218
CviAII	CATG	2 cut(s)	203, 460
CviJI	RGCY	6 cut(s)	210, 215, 244, 281, 301, 468
CviKI_1	RGCY	6 cut(s)	210, 215, 244, 281, 301, 468
DdeI	CTNAG	2 cut(s)	245, 441
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	98
Eco57I	CTGAAG	1 cut(s)	120
EcoT22I	ATGCAT	1 cut(s)	465
FaeI	CATG	2 cut(s)	206, 463
FaiI	YATR	6 cut(s)	132, 204, 366, 461, 465, 496
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	2 cut(s)	202, 459
Fnu4HI	GCNGC	3 cut(s)	8, 11, 55
FokI	GGATG	2 cut(s)	184, 323
Fsp4HI	GCNGC	3 cut(s)	8, 11, 55
FspBI	CTAG	1 cut(s)	285
GluI	GCNGC	3 cut(s)	8, 11, 55
HapII	CCGG	3 cut(s)	115, 165, 360
HgaI	GACGC	1 cut(s)	218
Hin1II	CATG	2 cut(s)	206, 463
HinfI	GANTC	3 cut(s)	64, 73, 323
HpaII	CCGG	3 cut(s)	115, 165, 360
HphI	GGTGA	1 cut(s)	71
Hpy188I	TCNGA	1 cut(s)	396
Hpy188III	TCNNGA	3 cut(s)	86, 98, 254
HpyAV	CCTTC	7 cut(s)	83, 92, 196, 200, 253, 313, 494
HpyCH4III	ACNGT	3 cut(s)	123, 473, 479
HpyCH4V	TGCA	3 cut(s)	7, 307, 463
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 419
HpyF3I	CTNAG	2 cut(s)	245, 441
Hsp92II	CATG	2 cut(s)	206, 463
Lsp1109I	GCAGC	3 cut(s)	19, 22, 66
MaeI	CTAG	1 cut(s)	285
MaeIII	GTNAC	4 cut(s)	77, 117, 428, 473
MboII	GAAGA	4 cut(s)	50, 113, 132, 348
MluCI	AATT	1 cut(s)	178
MlyI	GAGTC	1 cut(s)	73
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	3 cut(s)	240, 270, 348
Mph1103I	ATGCAT	1 cut(s)	465
MroXI	GAANNNNTTC	1 cut(s)	93
MseI	TTAA	1 cut(s)	435
MslI	CAYNNNNRTG	1 cut(s)	132
MspI	CCGG	3 cut(s)	115, 165, 360
MspR9I	CCNGG	1 cut(s)	361
Mva1269I	GAATGC	1 cut(s)	93
MwoI	GCNNNNNNNGC	2 cut(s)	221, 419
NciI	CCSGG	1 cut(s)	361
NlaIII	CATG	2 cut(s)	206, 463
NmuCI	GTSAC	2 cut(s)	77, 428
NsiI	ATGCAT	1 cut(s)	465
OliI	CACNNNNGTG	1 cut(s)	132
PctI	GAATGC	1 cut(s)	93
PdmI	GAANNNNTTC	1 cut(s)	93
PfeI	GAWTC	2 cut(s)	73, 323
PflMI	CCANNNNNTGG	1 cut(s)	28
PkrI	GCNGC	3 cut(s)	9, 12, 56
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
RseI	CAYNNNNRTG	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	3 cut(s)	8, 11, 55
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	1 cut(s)	361
SetI	ASST	5 cut(s)	84, 251, 264, 447, 470
SmiMI	CAYNNNNRTG	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	1 cut(s)	178
SspI	AATATT	1 cut(s)	391
SspMI	CTAG	1 cut(s)	285
StyD4I	CCNGG	1 cut(s)	359
TaaI	ACNGT	3 cut(s)	123, 473, 479
TasI	AATT	1 cut(s)	178
TfiI	GAWTC	2 cut(s)	73, 323
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TseFI	GTSAC	2 cut(s)	77, 428
TseI	GCWGC	3 cut(s)	7, 10, 54
Tsp45I	GTSAC	2 cut(s)	77, 428
TspDTI	ATGAA	1 cut(s)	219
Van91I	CCANNNNNTGG	1 cut(s)	28
XmnI	GAANNNNTTC	1 cut(s)	93
XspI	CTAG	1 cut(s)	285
Zsp2I	ATGCAT	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.