Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0022839

Physical Location & Seq

Genomic Coordinates Forward (+)

14731017 .. 14732242

Gene Structure 1226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001367

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGAGCCATGGGGGAGAAAGAAGAGAAGGGAAGATAAGGCAGTAGAGAAAGAGCTTAAAAAGCAAAAAGCAAAAGCTAGAGAAGCCGCCAAAAAGCTTCAGGAACAAGCAAACTCTACAGACAGTGGAAAGAAAGAGAAGAAGAATGTGAAGCGTTCCAAGTCCAACGAGGATGATGGTGACATTGATAACAATGCCAAAGACCCAGAGGCTCCATATGGCGAGAAGAAACTGTTGTCTCTTCAAATGGACAAAGAATACAATCCGAGTGCTGTGCAGAAGGGATGGTATCAGTGGTGGGAGACACAAGGCTTCTTTATGGCATATACTAAAAGCTCCAAACCTCCCTTTGTGATGGTGCTGCCGCCTCCGAATGTCACAGGTGTGCTTCATATAGGCCATGCTCTCATTACTTCTATTGAGGACACTATAATTCACTGGCGGCGAATTATTCAATATCTGATAGCATTGGACTCTTACTCCAAGCCGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

165

Amino Acids

18.98

Weight (kDa)

9.46

Isoelectric Point (pI)

46.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1	PF00133	96 - 150	9.2e-14	tRNA synthetases class I (I, L, M and V)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022839)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001367
rosa_multiflora	Rmu_sc0000927.1_g000002
rosa_samantha	Rh7BG399500
rosa_wichuraiana	Rw7G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	87, 365, 442
AcuI	CTGAAG	1 cut(s)	83
AfaI	GTAC	1 cut(s)	491
AgsI	TTSAA	2 cut(s)	245, 455
AleI	CACNNNNGTG	1 cut(s)	383
AluBI	AGCT	4 cut(s)	55, 77, 97, 336
AluI	AGCT	4 cut(s)	55, 77, 97, 336
Alw26I	GTCTC	2 cut(s)	243, 296
AoxI	GGCC	1 cut(s)	397
ApeKI	GCWGC	1 cut(s)	361
AsuHPI	GGTGA	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	348
BccI	CCATC	3 cut(s)	170, 279, 349
BceAI	ACGGC	1 cut(s)	472
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BcoDI	GTCTC	2 cut(s)	243, 296
BfaI	CTAG	1 cut(s)	78
BfmI	CTRYAG	1 cut(s)	117
BisI	GCNGC	4 cut(s)	87, 362, 365, 443
BlsI	GCNGC	4 cut(s)	88, 363, 366, 444
BmiI	GGNNCC	2 cut(s)	6, 213
BsaJI	CCNNGG	1 cut(s)	8
BsaXI	ACNNNNNCTCC	2 cut(s)	464, 494
Bse1I	ACTGG	1 cut(s)	443
BseDI	CCNNGG	1 cut(s)	8
BseGI	GGATG	2 cut(s)	178, 290
BseNI	ACTGG	1 cut(s)	443
BseXI	GCAGC	1 cut(s)	348
BsgI	GTGCAG	1 cut(s)	296
BshFI	GGCC	1 cut(s)	399
BsmAI	GTCTC	2 cut(s)	243, 296
BsnI	GGCC	1 cut(s)	399
Bsp19I	CCATGG	1 cut(s)	8
BspACI	CCGC	3 cut(s)	87, 365, 442
BspANI	GGCC	1 cut(s)	399
BspLI	GGNNCC	2 cut(s)	6, 213
BsrI	ACTGG	1 cut(s)	443
BssECI	CCNNGG	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	8
Bst4CI	ACNGT	2 cut(s)	125, 234
Bst6I	CTCTTC	2 cut(s)	17, 246
BstDSI	CCRYGG	1 cut(s)	8
BstF5I	GGATG	2 cut(s)	178, 290
BstMAI	GTCTC	2 cut(s)	243, 296
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 83
BstSFI	CTRYAG	1 cut(s)	117
BstV1I	GCAGC	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	399
BtgI	CCRYGG	1 cut(s)	8
BtsCI	GGATG	2 cut(s)	178, 290
BtsIMutI	CAGTG	3 cut(s)	130, 299, 436
Csp6I	GTAC	1 cut(s)	490
CviAII	CATG	2 cut(s)	9, 401
CviQI	GTAC	1 cut(s)	490
Eam1104I	CTCTTC	2 cut(s)	17, 246
EarI	CTCTTC	2 cut(s)	17, 246
Eco130I	CCWWGG	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	83
EcoT14I	CCWWGG	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	8
FaeI	CATG	2 cut(s)	12, 404
FatI	CATG	2 cut(s)	8, 400
FauNDI	CATATG	1 cut(s)	217
Fnu4HI	GCNGC	4 cut(s)	87, 362, 365, 443
FokI	GGATG	2 cut(s)	185, 297
Fsp4HI	GCNGC	4 cut(s)	87, 362, 365, 443
FspBI	CTAG	1 cut(s)	78
GluI	GCNGC	4 cut(s)	87, 362, 365, 443
HaeIII	GGCC	1 cut(s)	399
Hin1II	CATG	2 cut(s)	12, 404
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	1 cut(s)	473
HphI	GGTGA	1 cut(s)	191
Hpy188I	TCNGA	3 cut(s)	267, 372, 462
Hpy188III	TCNNGA	1 cut(s)	101
HpyAV	CCTTC	2 cut(s)	21, 274
HpyCH4III	ACNGT	2 cut(s)	125, 234
HpyCH4V	TGCA	1 cut(s)	277
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 83
Hsp92II	CATG	2 cut(s)	12, 404
LmnI	GCTCC	3 cut(s)	4, 217, 341
LpnPI	CCDG	4 cut(s)	86, 219, 366, 424
Lsp1109I	GCAGC	1 cut(s)	348
MaeI	CTAG	1 cut(s)	78
MaeIII	GTNAC	2 cut(s)	179, 376
MboII	GAAGA	6 cut(s)	34, 44, 151, 154, 233, 238
MluCI	AATT	2 cut(s)	432, 447
MlyI	GAGTC	1 cut(s)	467
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	5 cut(s)	163, 202, 354, 378, 415
MseI	TTAA	1 cut(s)	57
MslI	CAYNNNNRTG	1 cut(s)	383
MwoI	GCNNNNNNNGC	2 cut(s)	61, 83
NcoI	CCATGG	1 cut(s)	8
NdeI	CATATG	1 cut(s)	217
NlaIII	CATG	2 cut(s)	12, 404
NlaIV	GGNNCC	2 cut(s)	6, 213
NmuCI	GTSAC	2 cut(s)	179, 376
OliI	CACNNNNGTG	1 cut(s)	383
PkrI	GCNGC	4 cut(s)	88, 363, 366, 444
PleI	GAGTC	1 cut(s)	467
PpsI	GAGTC	1 cut(s)	467
PspN4I	GGNNCC	2 cut(s)	6, 213
RsaI	GTAC	1 cut(s)	491
RsaNI	GTAC	1 cut(s)	490
RseI	CAYNNNNRTG	1 cut(s)	383
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	4 cut(s)	87, 362, 365, 443
SchI	GAGTC	1 cut(s)	467
SetI	ASST	6 cut(s)	57, 79, 99, 338, 346, 385
SfcI	CTRYAG	1 cut(s)	117
SmiMI	CAYNNNNRTG	1 cut(s)	383
Sse9I	AATT	2 cut(s)	432, 447
SsiI	CCGC	3 cut(s)	87, 365, 442
SspMI	CTAG	1 cut(s)	78
StyI	CCWWGG	1 cut(s)	8
TaaI	ACNGT	2 cut(s)	125, 234
TasI	AATT	2 cut(s)	432, 447
TauI	GCSGC	3 cut(s)	89, 367, 445
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	3 cut(s)	130, 299, 443
TseFI	GTSAC	2 cut(s)	179, 376
TseI	GCWGC	1 cut(s)	361
Tsp45I	GTSAC	2 cut(s)	179, 376
TspDTI	ATGAA	1 cut(s)	380
TspRI	CASTG	3 cut(s)	130, 299, 443
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.