Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0022839

Physical Location & Seq

Genomic Coordinates Reverse (-)

44309358 .. 44310418

Gene Structure 1061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG399500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGAGCCATGGGAGAGAAAGAAGAGAAGGGAAGACAAGGCAGTAGAGAAAGAGCTTAAAAAGCAAAAAGCAAAAGCTAGAGAAGCCGCCAGAAAGCTTCAGGAACAAGCAAACTCTACAGACAGTGGAAAGAAGGAGAAGAAGAATGTGAAGCGTTCCAAGTCCAACGAGGATGATGGTGACATTGATAACAATGCCAAAGACCCAGAGGCTCCATATGGCGTGAAGAAACTGTTGTCTCTTCAAATGGACAAAGAATACAATCCGAGTGCTGTGCAGAAGGGATGGTATCAGTGGTGGCGGGAGACACAAGGCTTCTTTACGGCAGATGCTAAAAGCTCCAAACCTCCCTTTGTGATGGTGCTGCCGCCTCCGAATGTCACAGGTGTGCTTCATATAGGCCATGCTCTCATGACTTCTATTGAGGACACTATAATTCATTGGCGGCGAATGTCCGGCAGCAACACCTTGCCGCCTGGAAGGCCTGGACTCGATATGAGGCTTGAGAGTCGGCTGTCTCAAGCCCAGAAACTCAGGAGTAGGCTGTCTCAGGCCCAGAAACTCAGGAGGCCCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

192

Amino Acids

22.1

Weight (kDa)

10.08

Isoelectric Point (pI)

57.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1	PF00133	96 - 165	6.5e-17	tRNA synthetases class I (I, L, M and V)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022839)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001367
rosa_multiflora	Rmu_sc0000927.1_g000002
rosa_samantha	Rh7BG399500
rosa_wichuraiana	Rw7G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	87, 301, 368, 445, 473
AcuI	CTGAAG	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	245
AjnI	CCWGG	2 cut(s)	475, 484
AleI	CACNNNNGTG	1 cut(s)	386
AluBI	AGCT	4 cut(s)	55, 77, 97, 339
AluI	AGCT	4 cut(s)	55, 77, 97, 339
Alw26I	GTCTC	4 cut(s)	243, 299, 522, 552
AoxI	GGCC	4 cut(s)	400, 482, 552, 569
ApeKI	GCWGC	2 cut(s)	364, 459
AspS9I	GGNCC	2 cut(s)	553, 570
AsuHPI	GGTGA	1 cut(s)	191
BbsI	GAAGAC	1 cut(s)	39
BbvI	GCAGC	2 cut(s)	351, 471
BccI	CCATC	3 cut(s)	170, 279, 352
BceAI	ACGGC	1 cut(s)	339
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BciT130I	CCWGG	2 cut(s)	477, 486
BcoDI	GTCTC	4 cut(s)	243, 299, 522, 552
BfaI	CTAG	1 cut(s)	78
BfmI	CTRYAG	1 cut(s)	117
BglI	GCCNNNNNGGC	1 cut(s)	481
BisI	GCNGC	6 cut(s)	87, 365, 368, 446, 460, 473
BlsI	GCNGC	6 cut(s)	88, 366, 369, 447, 461, 474
Bme1390I	CCNGG	2 cut(s)	477, 486
BmgT120I	GGNCC	2 cut(s)	553, 570
BmiI	GGNNCC	2 cut(s)	6, 213
BmrFI	CCNGG	2 cut(s)	477, 486
BmsI	GCATC	1 cut(s)	319
BpiI	GAAGAC	1 cut(s)	39
BpuEI	CTTGAG	2 cut(s)	504, 524
BsaJI	CCNNGG	1 cut(s)	8
BseBI	CCWGG	2 cut(s)	477, 486
BseDI	CCNNGG	1 cut(s)	8
BseGI	GGATG	2 cut(s)	178, 290
BseMII	CTCAG	3 cut(s)	547, 563, 577
BseXI	GCAGC	2 cut(s)	351, 471
BsgI	GTGCAG	1 cut(s)	296
BshFI	GGCC	4 cut(s)	402, 484, 554, 571
BsiSI	CCGG	1 cut(s)	456
BsmAI	GTCTC	4 cut(s)	243, 299, 522, 552
BsnI	GGCC	4 cut(s)	402, 484, 554, 571
Bsp19I	CCATGG	1 cut(s)	8
BspACI	CCGC	5 cut(s)	87, 301, 368, 445, 473
BspANI	GGCC	4 cut(s)	402, 484, 554, 571
BspCNI	CTCAG	3 cut(s)	546, 562, 576
BspHI	TCATGA	1 cut(s)	411
BspLI	GGNNCC	2 cut(s)	6, 213
BssECI	CCNNGG	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	8
Bst2UI	CCWGG	2 cut(s)	477, 486
Bst4CI	ACNGT	2 cut(s)	125, 234
Bst6I	CTCTTC	2 cut(s)	17, 246
BstDEI	CTNAG	3 cut(s)	533, 549, 563
BstDSI	CCRYGG	1 cut(s)	8
BstF5I	GGATG	2 cut(s)	178, 290
BstMAI	GTCTC	4 cut(s)	243, 299, 522, 552
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 83, 481
BstNI	CCWGG	2 cut(s)	477, 486
BstSCI	CCNGG	2 cut(s)	475, 484
BstSFI	CTRYAG	1 cut(s)	117
BstV1I	GCAGC	2 cut(s)	351, 471
BstV2I	GAAGAC	1 cut(s)	39
BsuRI	GGCC	4 cut(s)	402, 484, 554, 571
BtgI	CCRYGG	1 cut(s)	8
BtsCI	GGATG	2 cut(s)	178, 290
BtsIMutI	CAGTG	2 cut(s)	130, 299
CciI	TCATGA	1 cut(s)	411
Cfr13I	GGNCC	2 cut(s)	553, 570
CviAII	CATG	3 cut(s)	9, 404, 412
DdeI	CTNAG	3 cut(s)	533, 549, 563
Eam1104I	CTCTTC	2 cut(s)	17, 246
EarI	CTCTTC	2 cut(s)	17, 246
Eco130I	CCWWGG	1 cut(s)	8
Eco147I	AGGCCT	1 cut(s)	484
Eco57I	CTGAAG	1 cut(s)	83
EcoRII	CCWGG	2 cut(s)	475, 484
EcoT14I	CCWWGG	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	8
FaeI	CATG	3 cut(s)	12, 407, 415
FaiI	YATR	9 cut(s)	10, 217, 219, 396, 398, 405, 413, 434, 497
FatI	CATG	3 cut(s)	8, 403, 411
FauI	CCCGC	1 cut(s)	294
FauNDI	CATATG	1 cut(s)	217
Fnu4HI	GCNGC	6 cut(s)	87, 365, 368, 446, 460, 473
FokI	GGATG	2 cut(s)	185, 297
Fsp4HI	GCNGC	6 cut(s)	87, 365, 368, 446, 460, 473
FspBI	CTAG	1 cut(s)	78
GluI	GCNGC	6 cut(s)	87, 365, 368, 446, 460, 473
HaeIII	GGCC	4 cut(s)	402, 484, 554, 571
HapII	CCGG	1 cut(s)	456
Hin1II	CATG	3 cut(s)	12, 407, 415
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	2 cut(s)	489, 508
HpaII	CCGG	1 cut(s)	456
HphI	GGTGA	1 cut(s)	191
Hpy188I	TCNGA	2 cut(s)	267, 375
Hpy188III	TCNNGA	4 cut(s)	101, 412, 535, 565
HpyAV	CCTTC	4 cut(s)	21, 127, 274, 474
HpyCH4III	ACNGT	2 cut(s)	125, 234
HpyCH4V	TGCA	1 cut(s)	277
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 83, 481
HpyF3I	CTNAG	3 cut(s)	533, 549, 563
Hsp92II	CATG	3 cut(s)	12, 407, 415
LmnI	GCTCC	3 cut(s)	4, 217, 344
Lsp1109I	GCAGC	2 cut(s)	351, 471
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	1 cut(s)	78
MaeIII	GTNAC	2 cut(s)	179, 379
MboII	GAAGA	6 cut(s)	34, 44, 151, 154, 233, 238
MluCI	AATT	1 cut(s)	435
MlyI	GAGTC	2 cut(s)	483, 517
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	7 cut(s)	163, 202, 357, 381, 418, 492, 561
MseI	TTAA	1 cut(s)	57
MslI	CAYNNNNRTG	1 cut(s)	386
MspI	CCGG	1 cut(s)	456
MspR9I	CCNGG	2 cut(s)	477, 486
MvaI	CCWGG	2 cut(s)	477, 486
MwoI	GCNNNNNNNGC	3 cut(s)	61, 83, 481
NcoI	CCATGG	1 cut(s)	8
NdeI	CATATG	1 cut(s)	217
NlaIII	CATG	3 cut(s)	12, 407, 415
NlaIV	GGNNCC	2 cut(s)	6, 213
NmuCI	GTSAC	2 cut(s)	179, 379
OliI	CACNNNNGTG	1 cut(s)	386
PagI	TCATGA	1 cut(s)	411
PceI	AGGCCT	1 cut(s)	484
PkrI	GCNGC	6 cut(s)	88, 366, 369, 447, 461, 474
PleI	GAGTC	2 cut(s)	483, 516
PpsI	GAGTC	2 cut(s)	483, 516
Psp6I	CCWGG	2 cut(s)	475, 484
PspGI	CCWGG	2 cut(s)	475, 484
PspN4I	GGNNCC	2 cut(s)	6, 213
PspPI	GGNCC	2 cut(s)	553, 570
RseI	CAYNNNNRTG	1 cut(s)	386
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	6 cut(s)	87, 365, 368, 446, 460, 473
Sau96I	GGNCC	2 cut(s)	553, 570
SchI	GAGTC	2 cut(s)	483, 517
ScrFI	CCNGG	2 cut(s)	477, 486
SetI	ASST	7 cut(s)	57, 79, 99, 341, 349, 388, 470
SfaNI	GCATC	1 cut(s)	319
SfcI	CTRYAG	1 cut(s)	117
SmiMI	CAYNNNNRTG	1 cut(s)	386
SmlI	CTYRAG	2 cut(s)	503, 519
SmoI	CTYRAG	2 cut(s)	503, 519
Sse9I	AATT	1 cut(s)	435
SseBI	AGGCCT	1 cut(s)	484
SsiI	CCGC	5 cut(s)	87, 301, 368, 445, 473
SspMI	CTAG	1 cut(s)	78
StuI	AGGCCT	1 cut(s)	484
StyD4I	CCNGG	2 cut(s)	475, 484
StyI	CCWWGG	1 cut(s)	8
TaaI	ACNGT	2 cut(s)	125, 234
TaqI	TCGA	1 cut(s)	492
TasI	AATT	1 cut(s)	435
TauI	GCSGC	4 cut(s)	89, 370, 448, 475
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	2 cut(s)	130, 299
TseFI	GTSAC	2 cut(s)	179, 379
TseI	GCWGC	2 cut(s)	364, 459
Tsp45I	GTSAC	2 cut(s)	179, 379
TspDTI	ATGAA	2 cut(s)	383, 428
TspRI	CASTG	2 cut(s)	130, 299
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.