Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0022839

Physical Location & Seq

Genomic Coordinates Reverse (-)

52461806 .. 52462816

Gene Structure 1011 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G035200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGCTAAAATTCATGGAGAAACAGCAAAGGCGTAATATGGAGCCATGGGAGAGAAAGAAGAGAAGGGAAGACAAGGCAGTAGAGAAAGAGCTTAAAAAGCAAAAAGCAAAAGCTAGAGAAGCCACCAGAAAGCTTCAGGAACAAGCAAACTCTACAGACACTGGAAAGAAGGAGAAGAAGAATGTGAAGCGTTCCAAGTCCAACGAGGATGATGGTGACATTGATAACAATGCCAAAGACCCAGAGGCTCCATATGGCGAGAAGAAACTGTTGTCTCTTCAAATGGACAAAGAACACAATCCAAGTGCTGTGCAGAAGGGATGGTATGATTGGTATCAGTGGTGGGAACAAGGCTTCTCTATGGCAGATGCTAAAAGCTCCAAACCTCCCTTTGTGAAAGTGCCGCCGCCTCCGAATGTCACTGGTGTGCTTCATATAGGCCATGCTCTCATTACTTCTATTGAGGACACTATAATTCACTGGCGCCGAATGTCCGGCAGCAACACCTTGCCGCCCGGAAGGCCTGGACCCGATATGAGGCTTGAGAGTCGGCTGTCTCAAGCCCAGAAACTCAGGAGTAGGCTGTCTCAGGCCCAGAAACTCAGGAGACCCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

205

Amino Acids

23.87

Weight (kDa)

10.05

Isoelectric Point (pI)

60.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1	PF00133	111 - 170	2.9e-13	tRNA synthetases class I (I, L, M and V)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022839)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001367
rosa_multiflora	Rmu_sc0000927.1_g000002
rosa_samantha	Rh7BG399500
rosa_wichuraiana	Rw7G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	483
AciI	CCGC	3 cut(s)	404, 407, 512
AcsI	RAATTY	1 cut(s)	8
AcuI	CTGAAG	1 cut(s)	119
AcyI	GRCGYC	1 cut(s)	484
AfiI	CCNNNNNNNGG	1 cut(s)	537
AgsI	TTSAA	1 cut(s)	281
AjnI	CCWGG	1 cut(s)	523
AleI	CACNNNNGTG	1 cut(s)	425
AluBI	AGCT	4 cut(s)	91, 113, 133, 378
AluI	AGCT	4 cut(s)	91, 113, 133, 378
Alw26I	GTCTC	4 cut(s)	279, 561, 591, 601
AlwNI	CAGNNNCTG	1 cut(s)	161
AoxI	GGCC	3 cut(s)	439, 521, 591
ApeKI	GCWGC	1 cut(s)	498
ApoI	RAATTY	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	486
AspS9I	GGNCC	2 cut(s)	527, 592
AsuC2I	CCSGG	1 cut(s)	516
AsuHPI	GGTGA	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	527
BanI	GGYRCC	1 cut(s)	483
BbsI	GAAGAC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	510
BccI	CCATC	2 cut(s)	206, 315
BciT130I	CCWGG	1 cut(s)	525
BcnI	CCSGG	1 cut(s)	516
BcoDI	GTCTC	4 cut(s)	279, 561, 591, 601
BfaI	CTAG	1 cut(s)	114
BfmI	CTRYAG	1 cut(s)	153
BfoI	RGCGCY	1 cut(s)	487
BglI	GCCNNNNNGGC	1 cut(s)	520
BisI	GCNGC	4 cut(s)	404, 407, 499, 512
BlsI	GCNGC	4 cut(s)	405, 408, 500, 513
Bme1390I	CCNGG	2 cut(s)	516, 525
Bme18I	GGWCC	1 cut(s)	527
BmgT120I	GGNCC	2 cut(s)	527, 592
BmiI	GGNNCC	4 cut(s)	42, 249, 485, 529
BmrFI	CCNGG	2 cut(s)	516, 525
BmsI	GCATC	1 cut(s)	358
BpiI	GAAGAC	1 cut(s)	75
BpuEI	CTTGAG	2 cut(s)	543, 563
BpuMI	CCSGG	1 cut(s)	516
BsaBI	GATNNNNATC	1 cut(s)	333
BsaHI	GRCGYC	1 cut(s)	484
BsaI	GGTCTC	1 cut(s)	601
BsaJI	CCNNGG	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	1 cut(s)	537
Bse1I	ACTGG	3 cut(s)	166, 427, 485
Bse8I	GATNNNNATC	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	525
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	2 cut(s)	214, 326
BseJI	GATNNNNATC	1 cut(s)	333
BseLI	CCNNNNNNNGG	1 cut(s)	537
BseMII	CTCAG	3 cut(s)	586, 602, 616
BseNI	ACTGG	3 cut(s)	166, 427, 485
BseXI	GCAGC	1 cut(s)	510
BsgI	GTGCAG	1 cut(s)	332
BshFI	GGCC	3 cut(s)	441, 523, 593
BshNI	GGYRCC	1 cut(s)	483
BsiSI	CCGG	2 cut(s)	495, 516
BslI	CCNNNNNNNGG	1 cut(s)	537
BsmAI	GTCTC	4 cut(s)	279, 561, 591, 601
BsnI	GGCC	3 cut(s)	441, 523, 593
Bso31I	GGTCTC	1 cut(s)	601
Bsp19I	CCATGG	1 cut(s)	44
BspACI	CCGC	3 cut(s)	404, 407, 512
BspANI	GGCC	3 cut(s)	441, 523, 593
BspCNI	CTCAG	3 cut(s)	585, 601, 615
BspLI	GGNNCC	4 cut(s)	42, 249, 485, 529
BspT107I	GGYRCC	1 cut(s)	483
BspTNI	GGTCTC	1 cut(s)	601
BsrI	ACTGG	3 cut(s)	166, 427, 485
BssECI	CCNNGG	1 cut(s)	44
BssNI	GRCGYC	1 cut(s)	484
BssT1I	CCWWGG	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	525
Bst4CI	ACNGT	1 cut(s)	270
Bst6I	CTCTTC	2 cut(s)	53, 282
BstACI	GRCGYC	1 cut(s)	484
BstDEI	CTNAG	3 cut(s)	572, 588, 602
BstDSI	CCRYGG	1 cut(s)	44
BstF5I	GGATG	2 cut(s)	214, 326
BstH2I	RGCGCY	1 cut(s)	487
BstHHI	GCGC	1 cut(s)	486
BstMAI	GTCTC	4 cut(s)	279, 561, 591, 601
BstMWI	GCNNNNNNNGC	3 cut(s)	97, 119, 520
BstNI	CCWGG	1 cut(s)	525
BstSCI	CCNGG	2 cut(s)	514, 523
BstSFI	CTRYAG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	510
BstV2I	GAAGAC	1 cut(s)	75
BsuRI	GGCC	3 cut(s)	441, 523, 593
BtgI	CCRYGG	1 cut(s)	44
BtsCI	GGATG	2 cut(s)	214, 326
BtsIMutI	CAGTG	4 cut(s)	159, 344, 420, 478
CaiI	CAGNNNCTG	1 cut(s)	161
CfoI	GCGC	1 cut(s)	486
Cfr13I	GGNCC	2 cut(s)	527, 592
CviAII	CATG	3 cut(s)	13, 45, 443
DdeI	CTNAG	3 cut(s)	572, 588, 602
DinI	GGCGCC	1 cut(s)	485
Eam1104I	CTCTTC	2 cut(s)	53, 282
EarI	CTCTTC	2 cut(s)	53, 282
Eco130I	CCWWGG	1 cut(s)	44
Eco147I	AGGCCT	1 cut(s)	523
Eco31I	GGTCTC	1 cut(s)	601
Eco47I	GGWCC	1 cut(s)	527
Eco57I	CTGAAG	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	523
EcoT14I	CCWWGG	1 cut(s)	44
EgeI	GGCGCC	1 cut(s)	485
EheI	GGCGCC	1 cut(s)	485
ErhI	CCWWGG	1 cut(s)	44
FaeI	CATG	3 cut(s)	16, 48, 446
FatI	CATG	3 cut(s)	12, 44, 442
FauNDI	CATATG	1 cut(s)	253
Fnu4HI	GCNGC	4 cut(s)	404, 407, 499, 512
FokI	GGATG	2 cut(s)	221, 333
Fsp4HI	GCNGC	4 cut(s)	404, 407, 499, 512
FspBI	CTAG	1 cut(s)	114
GlaI	GCGC	1 cut(s)	485
GluI	GCNGC	4 cut(s)	404, 407, 499, 512
HaeII	RGCGCY	1 cut(s)	487
HaeIII	GGCC	3 cut(s)	441, 523, 593
HapII	CCGG	2 cut(s)	495, 516
HhaI	GCGC	1 cut(s)	486
Hin1I	GRCGYC	1 cut(s)	484
Hin1II	CATG	3 cut(s)	16, 48, 446
Hin6I	GCGC	1 cut(s)	484
HinP1I	GCGC	1 cut(s)	484
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	1 cut(s)	547
HpaII	CCGG	2 cut(s)	495, 516
HphI	GGTGA	1 cut(s)	227
Hpy188I	TCNGA	1 cut(s)	414
Hpy188III	TCNNGA	3 cut(s)	137, 574, 604
HpyAV	CCTTC	4 cut(s)	57, 163, 310, 513
HpyCH4III	ACNGT	1 cut(s)	270
HpyCH4V	TGCA	1 cut(s)	313
HpyF10VI	GCNNNNNNNGC	3 cut(s)	97, 119, 520
HpyF3I	CTNAG	3 cut(s)	572, 588, 602
Hsp92I	GRCGYC	1 cut(s)	484
Hsp92II	CATG	3 cut(s)	16, 48, 446
HspAI	GCGC	1 cut(s)	484
KasI	GGCGCC	1 cut(s)	483
LmnI	GCTCC	3 cut(s)	40, 253, 383
Lsp1109I	GCAGC	1 cut(s)	510
LweI	GCATC	1 cut(s)	358
MaeI	CTAG	1 cut(s)	114
MaeIII	GTNAC	2 cut(s)	215, 418
MboII	GAAGA	6 cut(s)	70, 80, 187, 190, 269, 274
MluCI	AATT	2 cut(s)	8, 474
Mly113I	GGCGCC	1 cut(s)	484
MlyI	GAGTC	1 cut(s)	556
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	6 cut(s)	199, 238, 396, 420, 457, 531
MseI	TTAA	1 cut(s)	93
MslI	CAYNNNNRTG	1 cut(s)	425
MspI	CCGG	2 cut(s)	495, 516
MspR9I	CCNGG	2 cut(s)	516, 525
MvaI	CCWGG	1 cut(s)	525
MwoI	GCNNNNNNNGC	3 cut(s)	97, 119, 520
NarI	GGCGCC	1 cut(s)	484
NciI	CCSGG	1 cut(s)	516
NcoI	CCATGG	1 cut(s)	44
NdeI	CATATG	1 cut(s)	253
NlaIII	CATG	3 cut(s)	16, 48, 446
NlaIV	GGNNCC	4 cut(s)	42, 249, 485, 529
NmuCI	GTSAC	2 cut(s)	215, 418
OliI	CACNNNNGTG	1 cut(s)	425
PceI	AGGCCT	1 cut(s)	523
PkrI	GCNGC	4 cut(s)	405, 408, 500, 513
PleI	GAGTC	1 cut(s)	555
PluTI	GGCGCC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	555
Psp6I	CCWGG	1 cut(s)	523
PspGI	CCWGG	1 cut(s)	523
PspN4I	GGNNCC	4 cut(s)	42, 249, 485, 529
PspPI	GGNCC	2 cut(s)	527, 592
PstNI	CAGNNNCTG	1 cut(s)	161
RseI	CAYNNNNRTG	1 cut(s)	425
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	4 cut(s)	404, 407, 499, 512
Sau96I	GGNCC	2 cut(s)	527, 592
SchI	GAGTC	1 cut(s)	556
ScrFI	CCNGG	2 cut(s)	516, 525
SetI	ASST	6 cut(s)	93, 115, 135, 380, 388, 509
SfaNI	GCATC	1 cut(s)	358
SfcI	CTRYAG	1 cut(s)	153
SfoI	GGCGCC	1 cut(s)	485
SinI	GGWCC	1 cut(s)	527
SmiMI	CAYNNNNRTG	1 cut(s)	425
SmlI	CTYRAG	2 cut(s)	542, 558
SmoI	CTYRAG	2 cut(s)	542, 558
Sse9I	AATT	2 cut(s)	8, 474
SseBI	AGGCCT	1 cut(s)	523
SsiI	CCGC	3 cut(s)	404, 407, 512
SspDI	GGCGCC	1 cut(s)	483
SspMI	CTAG	1 cut(s)	114
StuI	AGGCCT	1 cut(s)	523
StyD4I	CCNGG	2 cut(s)	514, 523
StyI	CCWWGG	1 cut(s)	44
TaaI	ACNGT	1 cut(s)	270
TasI	AATT	2 cut(s)	8, 474
TauI	GCSGC	3 cut(s)	406, 409, 514
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	4 cut(s)	166, 344, 427, 485
TseFI	GTSAC	2 cut(s)	215, 418
TseI	GCWGC	1 cut(s)	498
Tsp45I	GTSAC	2 cut(s)	215, 418
TspDTI	ATGAA	1 cut(s)	422
TspRI	CASTG	4 cut(s)	166, 344, 427, 485
VpaK11BI	GGWCC	1 cut(s)	527
XapI	RAATTY	1 cut(s)	8
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.