Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0018590

Physical Location & Seq

Genomic Coordinates Reverse (-)

21615318 .. 21617969

Gene Structure 2652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001839

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTTTTCTGTTCTGAAATGGAAATGCTCATGGTCTATGATACCGGCAATTGCTTCTATTGTGGGATTGGTTTCACTAATGTTGGCTTCAAAAGTTCATATGTTCTTCTTTCCATTAGTTCCTTGTTTCGAGTACTTTAGTCAAACTCATAACTCTTGTGTCCCAATCAATGCTTCTACTGAAGCAATTACGGATCATTTTAGGGGAAATTTAGAACCTCCTATTGACTTAGAAAATCATTTTCCAGCTGACTTGCACAAGGCAGTTGTTTTTCGTGGAGCACCATGGAAGGCAGAGATTGGCCGGTGGCTTGCTGGTTGTGGCTCAATTTCTAATAAAGTCAACATTGTGGAGGTGGGAGTGGCTGCAAAAATGACTGCAGTGGTTGAGGTTTTTGTAATCGTGAATTGGGACAATGTCGGTGCTTTCATGGATATAGTGAGCAAATGGAGATTGCAGAATCAAAACCAGAAGGAGATCGAGTTGCTAAACTGGGGTGATCGAATTGCAAAAGATGAAATATTCATGGAGCGTGGCTTTGTTGCCACCAATTTTGGGAACGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00250 ko01100 map00230 map00250 map01100

Pfam Domains

Protein Families

EGF_2 Exostosin

Protein Analysis

189

Amino Acids

21.12

Weight (kDa)

6.19

Isoelectric Point (pI)

26.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018590)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0387421
rosa_laevigata	RLG00000001839 RLG00000018144 RLG00000018472
rosa_multiflora	Rmu_sc0001551.1_g000011
rosa_roxburghii	Rroxscaffold_5G00365390
rosa_samantha	Rh2AG341500 Rh2DG561900 Rh4AG250900 Rh5DG010000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	561
AclWI	GGATC	1 cut(s)	201
AcoI	YGGCCR	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	208
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	555
AgsI	TTSAA	1 cut(s)	90
AjuI	GAANNNNNNNTTGG	2 cut(s)	157, 189
AluBI	AGCT	1 cut(s)	248
AluI	AGCT	1 cut(s)	248
Alw21I	GWGCWC	1 cut(s)	283
AlwI	GGATC	1 cut(s)	201
AoxI	GGCC	1 cut(s)	301
ApeKI	GCWGC	1 cut(s)	365
ApoI	RAATTY	1 cut(s)	208
AsuHPI	GGTGA	1 cut(s)	509
Bbv12I	GWGCWC	1 cut(s)	283
BbvI	GCAGC	1 cut(s)	352
BfmI	CTRYAG	1 cut(s)	378
BisI	GCNGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	367
BmcAI	AGTACT	1 cut(s)	134
BmrI	ACTGGG	1 cut(s)	502
BmuI	ACTGGG	1 cut(s)	502
BsaJI	CCNNGG	1 cut(s)	284
BsaXI	ACNNNNNCTCC	2 cut(s)	467, 497
Bsc4I	CCNNNNNNNGG	1 cut(s)	555
Bse118I	RCCGGY	2 cut(s)	43, 303
Bse1I	ACTGG	1 cut(s)	497
BseDI	CCNNGG	1 cut(s)	284
BseLI	CCNNNNNNNGG	1 cut(s)	555
BseNI	ACTGG	1 cut(s)	497
BseXI	GCAGC	1 cut(s)	352
BshFI	GGCC	1 cut(s)	303
BsiHKAI	GWGCWC	1 cut(s)	283
BsiSI	CCGG	2 cut(s)	44, 304
BslFI	GGGAC	2 cut(s)	146, 425
BslI	CCNNNNNNNGG	1 cut(s)	555
BsmFI	GGGAC	2 cut(s)	146, 425
BsnI	GGCC	1 cut(s)	303
Bsp1286I	GDGCHC	1 cut(s)	283
Bsp143I	GATC	3 cut(s)	193, 477, 499
Bsp19I	CCATGG	1 cut(s)	284
BspANI	GGCC	1 cut(s)	303
BspMAI	CTGCAG	1 cut(s)	382
BspPI	GGATC	1 cut(s)	201
BsrFI	RCCGGY	2 cut(s)	43, 303
BsrI	ACTGG	1 cut(s)	497
BssAI	RCCGGY	2 cut(s)	43, 303
BssECI	CCNNGG	1 cut(s)	284
BssMI	GATC	3 cut(s)	193, 477, 499
BssT1I	CCWWGG	1 cut(s)	284
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	1 cut(s)	229
BstDSI	CCRYGG	1 cut(s)	284
BstKTI	GATC	3 cut(s)	196, 480, 502
BstMBI	GATC	3 cut(s)	193, 477, 499
BstSFI	CTRYAG	1 cut(s)	378
BstV1I	GCAGC	1 cut(s)	352
BsuRI	GGCC	1 cut(s)	303
BtgI	CCRYGG	1 cut(s)	284
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	1 cut(s)	387
Cac8I	GCNNGC	1 cut(s)	312
Cfr10I	RCCGGY	2 cut(s)	43, 303
Csp6I	GTAC	1 cut(s)	133
CspCI	CAANNNNNGTGG	1 cut(s)	535
CviAII	CATG	4 cut(s)	30, 285, 430, 526
CviJI	RGCY	7 cut(s)	86, 248, 303, 310, 324, 365, 537
CviKI_1	RGCY	7 cut(s)	86, 248, 303, 310, 324, 365, 537
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	1 cut(s)	229
DpnI	GATC	3 cut(s)	195, 479, 501
DpnII	GATC	3 cut(s)	193, 477, 499
EaeI	YGGCCR	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	284
Eco57I	CTGAAG	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	284
FaeI	CATG	4 cut(s)	33, 288, 433, 529
FaiI	YATR	9 cut(s)	31, 38, 99, 101, 150, 286, 431, 437, 527
FaqI	GGGAC	2 cut(s)	146, 425
FatI	CATG	4 cut(s)	29, 284, 429, 525
FauNDI	CATATG	1 cut(s)	99
Fnu4HI	GCNGC	1 cut(s)	366
Fsp4HI	GCNGC	1 cut(s)	366
GluI	GCNGC	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	303
HapII	CCGG	2 cut(s)	44, 304
Hin1II	CATG	4 cut(s)	33, 288, 433, 529
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	1 cut(s)	460
HpaII	CCGG	2 cut(s)	44, 304
HphI	GGTGA	1 cut(s)	509
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	1 cut(s)	403
Hpy8I	GTNNAC	1 cut(s)	343
HpyAV	CCTTC	2 cut(s)	283, 466
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	5 cut(s)	256, 368, 380, 457, 509
HpyF3I	CTNAG	1 cut(s)	229
HpySE526I	ACGT	1 cut(s)	561
Hsp92II	CATG	4 cut(s)	33, 288, 433, 529
Kzo9I	GATC	3 cut(s)	193, 477, 499
LmnI	GCTCC	2 cut(s)	278, 529
LpnPI	CCDG	6 cut(s)	57, 258, 300, 317, 478, 482
Lsp1109I	GCAGC	1 cut(s)	352
MaeII	ACGT	1 cut(s)	561
MalI	GATC	3 cut(s)	195, 479, 501
MboI	GATC	3 cut(s)	193, 477, 499
MboII	GAAGA	1 cut(s)	97
MfeI	CAATTG	1 cut(s)	48
MhlI	GDGCHC	1 cut(s)	283
MluCI	AATT	7 cut(s)	48, 186, 208, 327, 406, 504, 550
MnlI	CCTC	3 cut(s)	228, 346, 382
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	2 cut(s)	44, 304
MunI	CAATTG	1 cut(s)	48
NcoI	CCATGG	1 cut(s)	284
NdeI	CATATG	1 cut(s)	99
NdeII	GATC	3 cut(s)	193, 477, 499
NlaIII	CATG	4 cut(s)	33, 288, 433, 529
PfeI	GAWTC	1 cut(s)	460
PflFI	GACNNNGTC	1 cut(s)	416
PkrI	GCNGC	1 cut(s)	367
Psp1406I	AACGTT	1 cut(s)	561
PstI	CTGCAG	1 cut(s)	382
PsyI	GACNNNGTC	1 cut(s)	416
PvuII	CAGCTG	1 cut(s)	248
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SatI	GCNGC	1 cut(s)	366
Sau3AI	GATC	3 cut(s)	193, 477, 499
ScaI	AGTACT	1 cut(s)	134
SduI	GDGCHC	1 cut(s)	283
SetI	ASST	5 cut(s)	220, 250, 357, 393, 564
SfcI	CTRYAG	1 cut(s)	378
Sse9I	AATT	7 cut(s)	48, 186, 208, 327, 406, 504, 550
SspI	AATATT	1 cut(s)	522
StyI	CCWWGG	1 cut(s)	284
TaiI	ACGT	1 cut(s)	564
TaqI	TCGA	3 cut(s)	129, 480, 502
TasI	AATT	7 cut(s)	48, 186, 208, 327, 406, 504, 550
TatI	WGTACW	1 cut(s)	132
TfiI	GAWTC	1 cut(s)	460
TscAI	CASTG	1 cut(s)	387
TseI	GCWGC	1 cut(s)	365
TspDTI	ATGAA	4 cut(s)	86, 418, 514, 531
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	1 cut(s)	387
Tth111I	GACNNNGTC	1 cut(s)	416
XapI	RAATTY	1 cut(s)	208
ZrmI	AGTACT	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.