Rmu_sc0001551.1_g000011

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001551.1
OG0018590
Physical Location & Seq
Reverse (-)
66006 .. 66368
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001551.1_g000011.1.cds

Sequence Viewer

Length: 363 bp
atgttttctattctgaaatggaaatgctcatggtctatgatagcggcgattgcttctattgtgggattggtttcactaatgttggcttcaatagtccatctgttcttctttccattagttccttctttcgagtactttagtcaaactcagaactcttgtgtcccaatcaatgcttccactgaagcaattacggatcattttaggggaaatttagaacctcctattgacttagaaaatcaatttccagctgacttgcacaaggcagttgtttttcgtggagcaccatggaaggcagagattggccggtggcttgctggttgtggttgtttagctagttggggtgatcaagttttcagaatttag

Protein Analysis

120

Amino Acids

13.38

Weight (kDa)

6.25

Isoelectric Point (pI)

31.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018590)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0387421
rosa_laevigata RLG00000001839 RLG00000018144 RLG00000018472
rosa_multiflora Rmu_sc0001551.1_g000011
rosa_roxburghii Rroxscaffold_5G00365390
rosa_samantha Rh2AG341500 Rh2DG561900 Rh4AG250900 Rh5DG010000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 44
AclWI GGATC 1 cut(s) 201
AcoI YGGCCR 1 cut(s) 301
AcsI RAATTY 2 cut(s) 208, 357
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 1 cut(s) 134
AgsI TTSAA 1 cut(s) 90
AjuI GAANNNNNNNTTGG 2 cut(s) 157, 189
AluBI AGCT 2 cut(s) 248, 332
AluI AGCT 2 cut(s) 248, 332
Alw21I GWGCWC 1 cut(s) 283
AlwI GGATC 1 cut(s) 201
AoxI GGCC 1 cut(s) 301
ApoI RAATTY 2 cut(s) 208, 357
AsuHPI GGTGA 1 cut(s) 353
Bbv12I GWGCWC 1 cut(s) 283
BccI CCATC 1 cut(s) 105
BclI TGATCA 1 cut(s) 343
BfaI CTAG 1 cut(s) 333
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
BmcAI AGTACT 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 284
Bse118I RCCGGY 1 cut(s) 303
BseDI CCNNGG 1 cut(s) 284
BseMII CTCAG 1 cut(s) 161
BshFI GGCC 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 283
BsiSI CCGG 1 cut(s) 304
BslFI GGGAC 1 cut(s) 146
BsmFI GGGAC 1 cut(s) 146
BsnI GGCC 1 cut(s) 303
Bsp1286I GDGCHC 1 cut(s) 283
Bsp143I GATC 2 cut(s) 193, 343
Bsp19I CCATGG 1 cut(s) 284
BspACI CCGC 1 cut(s) 44
BspANI GGCC 1 cut(s) 303
BspCNI CTCAG 1 cut(s) 160
BspPI GGATC 1 cut(s) 201
BsrFI RCCGGY 1 cut(s) 303
BssAI RCCGGY 1 cut(s) 303
BssECI CCNNGG 1 cut(s) 284
BssMI GATC 2 cut(s) 193, 343
BssT1I CCWWGG 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 2 cut(s) 147, 229
BstDSI CCRYGG 1 cut(s) 284
BstKTI GATC 2 cut(s) 196, 346
BstMBI GATC 2 cut(s) 193, 343
BstMWI GCNNNNNNNGC 1 cut(s) 50
BsuRI GGCC 1 cut(s) 303
BtgI CCRYGG 1 cut(s) 284
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 312
Cfr10I RCCGGY 1 cut(s) 303
Csp6I GTAC 1 cut(s) 133
CviAII CATG 2 cut(s) 30, 285
CviJI RGCY 5 cut(s) 86, 248, 303, 310, 332
CviKI_1 RGCY 5 cut(s) 86, 248, 303, 310, 332
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 2 cut(s) 147, 229
DpnI GATC 2 cut(s) 195, 345
DpnII GATC 2 cut(s) 193, 343
EaeI YGGCCR 1 cut(s) 301
Eco130I CCWWGG 1 cut(s) 284
Eco57I CTGAAG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 284
FaeI CATG 2 cut(s) 33, 288
FaiI YATR 3 cut(s) 31, 38, 286
FaqI GGGAC 1 cut(s) 146
FatI CATG 2 cut(s) 29, 284
FbaI TGATCA 1 cut(s) 343
Fnu4HI GCNGC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 45
FspBI CTAG 1 cut(s) 333
GluI GCNGC 1 cut(s) 45
HaeIII GGCC 1 cut(s) 303
HapII CCGG 1 cut(s) 304
Hin1II CATG 2 cut(s) 33, 288
HpaII CCGG 1 cut(s) 304
HphI GGTGA 1 cut(s) 353
Hpy188I TCNGA 3 cut(s) 15, 150, 356
HpyAV CCTTC 2 cut(s) 132, 283
HpyCH4V TGCA 1 cut(s) 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 2 cut(s) 147, 229
Hsp92II CATG 2 cut(s) 33, 288
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 2 cut(s) 193, 343
LmnI GCTCC 1 cut(s) 278
LpnPI CCDG 3 cut(s) 258, 300, 317
MaeI CTAG 1 cut(s) 333
MalI GATC 2 cut(s) 195, 345
MboI GATC 2 cut(s) 193, 343
MboII GAAGA 1 cut(s) 97
MhlI GDGCHC 1 cut(s) 283
MluCI AATT 4 cut(s) 186, 208, 239, 357
MnlI CCTC 1 cut(s) 228
MspA1I CMGCKG 1 cut(s) 248
MspI CCGG 1 cut(s) 304
MwoI GCNNNNNNNGC 1 cut(s) 50
NcoI CCATGG 1 cut(s) 284
NdeII GATC 2 cut(s) 193, 343
NlaIII CATG 2 cut(s) 33, 288
PkrI GCNGC 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 248
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 2 cut(s) 193, 343
ScaI AGTACT 1 cut(s) 134
SduI GDGCHC 1 cut(s) 283
SetI ASST 3 cut(s) 220, 250, 334
Sse9I AATT 4 cut(s) 186, 208, 239, 357
SsiI CCGC 1 cut(s) 44
SspMI CTAG 1 cut(s) 333
StyI CCWWGG 1 cut(s) 284
TaqI TCGA 1 cut(s) 129
TasI AATT 4 cut(s) 186, 208, 239, 357
TatI WGTACW 1 cut(s) 132
TauI GCSGC 1 cut(s) 47
TscAI CASTG 1 cut(s) 184
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 1 cut(s) 184
XapI RAATTY 2 cut(s) 208, 357
XspI CTAG 1 cut(s) 333
ZrmI AGTACT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.