Rh2DG561900

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0018590
Physical Location & Seq
Forward (+)
79078676 .. 79080873
2198 bp
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UTR
Exon/CDS
Intron
Rh2DG561900.1

Sequence Viewer

Length: 309 bp
ATGCTTCCACTGAAGCAATTACGGATCATTTTGGGGGGAAATATAGAACCTCCTATTGACTTAGAAAATCATTTTCCAGCTGACTTTCACAAGGCAGTTGTTTTTCGTGGAGCACCATGGAAGGCAGAGATTAGCTGGAGGCTTGCTGGTTGTGGCTCAATTTCTAATAAAGTCAACATTGTGGAGTTAATAGGTGGGAGTGGCTGCAAAAATGACTGCAGTGGTCGAGGTTTTTGTAATCGTGAATTGGGACAATGTCGGTGCTTTCATGGATATAGTGGTGAAAACAGAAGAACAAATGGGATATAA

Protein Analysis

102

Amino Acids

11.21

Weight (kDa)

8.88

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EGF_Teneurin PF23106 69 - 95 8.1e-06 Teneurin-like EGF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018590)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0387421
rosa_laevigata RLG00000001839 RLG00000018144 RLG00000018472
rosa_multiflora Rmu_sc0001551.1_g000011
rosa_roxburghii Rroxscaffold_5G00365390
rosa_samantha Rh2AG341500 Rh2DG561900 Rh4AG250900 Rh5DG010000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 32
AcuI CTGAAG 1 cut(s) 32
AluBI AGCT 2 cut(s) 80, 135
AluI AGCT 2 cut(s) 80, 135
Alw21I GWGCWC 1 cut(s) 115
AlwI GGATC 1 cut(s) 32
ApeKI GCWGC 1 cut(s) 204
AsuHPI GGTGA 1 cut(s) 293
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 1 cut(s) 191
BfmI CTRYAG 1 cut(s) 217
BisI GCNGC 1 cut(s) 205
BlsI GCNGC 1 cut(s) 206
BpmI CTGGAG 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 116
BseDI CCNNGG 1 cut(s) 116
BseXI GCAGC 1 cut(s) 191
BsiHKAI GWGCWC 1 cut(s) 115
BslFI GGGAC 1 cut(s) 264
BsmFI GGGAC 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 115
Bsp143I GATC 1 cut(s) 24
Bsp19I CCATGG 1 cut(s) 116
BspMAI CTGCAG 1 cut(s) 221
BspPI GGATC 1 cut(s) 32
BssECI CCNNGG 1 cut(s) 116
BssMI GATC 1 cut(s) 24
BssT1I CCWWGG 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 1 cut(s) 61
BstDSI CCRYGG 1 cut(s) 116
BstKTI GATC 1 cut(s) 27
BstMBI GATC 1 cut(s) 24
BstSFI CTRYAG 1 cut(s) 217
BstV1I GCAGC 1 cut(s) 191
BtgI CCRYGG 1 cut(s) 116
BtsI GCAGTG 1 cut(s) 226
BtsIMutI CAGTG 2 cut(s) 8, 226
Cac8I GCNNGC 1 cut(s) 144
CviAII CATG 2 cut(s) 117, 269
CviJI RGCY 5 cut(s) 80, 135, 142, 156, 204
CviKI_1 RGCY 5 cut(s) 80, 135, 142, 156, 204
DdeI CTNAG 1 cut(s) 61
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 32
EcoT14I CCWWGG 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 116
FaeI CATG 2 cut(s) 120, 272
FaiI YATR 5 cut(s) 44, 118, 270, 276, 307
FaqI GGGAC 1 cut(s) 264
FatI CATG 2 cut(s) 116, 268
Fnu4HI GCNGC 1 cut(s) 205
Fsp4HI GCNGC 1 cut(s) 205
GluI GCNGC 1 cut(s) 205
GsuI CTGGAG 1 cut(s) 157
Hin1II CATG 2 cut(s) 120, 272
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 1 cut(s) 175
Hpy188III TCNNGA 1 cut(s) 242
Hpy8I GTNNAC 1 cut(s) 175
HpyAV CCTTC 1 cut(s) 115
HpyCH4V TGCA 2 cut(s) 207, 219
HpyF3I CTNAG 1 cut(s) 61
Hsp92II CATG 2 cut(s) 120, 272
Kzo9I GATC 1 cut(s) 24
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 3 cut(s) 90, 121, 132
Lsp1109I GCAGC 1 cut(s) 191
MalI GATC 1 cut(s) 26
MboI GATC 1 cut(s) 24
MboII GAAGA 1 cut(s) 303
MhlI GDGCHC 1 cut(s) 115
MluCI AATT 3 cut(s) 17, 159, 245
MnlI CCTC 3 cut(s) 60, 132, 221
MseI TTAA 1 cut(s) 188
MspA1I CMGCKG 1 cut(s) 80
NcoI CCATGG 1 cut(s) 116
NdeII GATC 1 cut(s) 24
NlaIII CATG 2 cut(s) 120, 272
PflFI GACNNNGTC 1 cut(s) 255
PkrI GCNGC 1 cut(s) 206
PstI CTGCAG 1 cut(s) 221
PsyI GACNNNGTC 1 cut(s) 255
PvuII CAGCTG 1 cut(s) 80
SaqAI TTAA 1 cut(s) 188
SatI GCNGC 1 cut(s) 205
Sau3AI GATC 1 cut(s) 24
SduI GDGCHC 1 cut(s) 115
SetI ASST 5 cut(s) 52, 82, 137, 196, 232
SfcI CTRYAG 1 cut(s) 217
Sse9I AATT 3 cut(s) 17, 159, 245
StyI CCWWGG 1 cut(s) 116
TaqI TCGA 1 cut(s) 226
TasI AATT 3 cut(s) 17, 159, 245
Tru1I TTAA 1 cut(s) 188
Tru9I TTAA 1 cut(s) 188
TscAI CASTG 2 cut(s) 15, 226
TseI GCWGC 1 cut(s) 204
TspDTI ATGAA 1 cut(s) 257
TspGWI ACGGA 1 cut(s) 37
TspRI CASTG 2 cut(s) 15, 226
Tth111I GACNNNGTC 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.