RLG00000002799

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0021501
Physical Location & Seq
Reverse (-)
40060951 .. 40062277
1327 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002799

Sequence Viewer

Length: 405 bp
ATGATTCTCGATGTGGTGTCAGAAGTGGAGGATCCGACCATAGCCTTTGCTGCTGTTAGGCGACGAGGAGCATGGCTGTGGGTTAGGCCTAGTGCTAAAGGCGACAGAGAAGGAAGAGGGGCTTTGCTTCAACTCGGGATGGAGGCTGAGAGTGGAAAAGCAGGAAGGGTAATCATGGCGGCTGGTGGTGGCGAAATCAGAGGTTCATGCAAGGCAACTGCCGAGGACGCATCGATCTGCAAGTTAGTTGCAGCAAGTGGTGGCGGGGATAACTACGGCGGCCTCCGTCGGTGGCAGAGGTGGAGGGGCCACCTCCGCCTCCTCAAAATTCCTTTAAGACTACTTCCTTACTCCTTCATTCCAAATGCTTCAGCACTACCAGCGCTCTTATGTGAACTAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.34

Weight (kDa)

9.72

Isoelectric Point (pI)

54.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021501)

Species Orthologous Gene IDs
rosa_laevigata RLG00000002799
rosa_multiflora Rmu_sc0034111.1_g000001
rosa_rugosa Rorug06G0307600
rosa_samantha Rh6CG433500 Rh6DG420200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 179, 264, 279, 316
AclWI GGATC 2 cut(s) 26, 39
AcsI RAATTY 1 cut(s) 327
AcuI CTGAAG 1 cut(s) 354
AfeI AGCGCT 1 cut(s) 384
AgsI TTSAA 1 cut(s) 131
AlwI GGATC 2 cut(s) 26, 39
Ama87I CYCGRG 1 cut(s) 134
Aor51HI AGCGCT 1 cut(s) 384
AoxI GGCC 3 cut(s) 86, 280, 307
ApeKI GCWGC 2 cut(s) 50, 251
ApoI RAATTY 1 cut(s) 327
AspLEI GCGC 1 cut(s) 385
AspS9I GGNCC 1 cut(s) 307
AvaI CYCGRG 1 cut(s) 134
BamHI GGATCC 1 cut(s) 31
BbvI GCAGC 2 cut(s) 37, 263
BccI CCATC 1 cut(s) 133
BceAI ACGGC 1 cut(s) 292
BfaI CTAG 2 cut(s) 90, 398
BfoI RGCGCY 1 cut(s) 386
BisI GCNGC 4 cut(s) 51, 180, 252, 280
BlsI GCNGC 4 cut(s) 52, 181, 253, 281
BmeT110I CYCGRG 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 307
BmiI GGNNCC 2 cut(s) 33, 308
BmsI GCATC 1 cut(s) 239
Bsa29I ATCGAT 1 cut(s) 233
BsaJI CCNNGG 1 cut(s) 222
BseCI ATCGAT 1 cut(s) 233
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 138
BseRI GAGGAG 2 cut(s) 81, 311
BseXI GCAGC 2 cut(s) 37, 263
BshFI GGCC 3 cut(s) 88, 282, 309
BshVI ATCGAT 1 cut(s) 233
BsiHKCI CYCGRG 1 cut(s) 134
BsnI GGCC 3 cut(s) 88, 282, 309
BsoBI CYCGRG 1 cut(s) 134
Bsp143I GATC 2 cut(s) 31, 234
BspACI CCGC 4 cut(s) 179, 264, 279, 316
BspANI GGCC 3 cut(s) 88, 282, 309
BspCNI CTCAG 1 cut(s) 139
BspDI ATCGAT 1 cut(s) 233
BspLI GGNNCC 2 cut(s) 33, 308
BspPI GGATC 2 cut(s) 26, 39
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 2 cut(s) 31, 234
Bst6I CTCTTC 1 cut(s) 109
BstDEI CTNAG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 144
BstH2I RGCGCY 1 cut(s) 386
BstHHI GCGC 1 cut(s) 385
BstKTI GATC 2 cut(s) 34, 237
BstMBI GATC 2 cut(s) 31, 234
BstMWI GCNNNNNNNGC 4 cut(s) 50, 227, 315, 380
BstV1I GCAGC 2 cut(s) 37, 263
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
Bsu15I ATCGAT 1 cut(s) 233
BsuRI GGCC 3 cut(s) 88, 282, 309
BsuTUI ATCGAT 1 cut(s) 233
BtsCI GGATG 1 cut(s) 144
CfoI GCGC 1 cut(s) 385
Cfr13I GGNCC 1 cut(s) 307
ClaI ATCGAT 1 cut(s) 233
CseI GACGC 1 cut(s) 236
CviAII CATG 3 cut(s) 72, 175, 207
CviJI RGCY 8 cut(s) 44, 76, 88, 122, 146, 182, 282, 309
CviKI_1 RGCY 8 cut(s) 44, 76, 88, 122, 146, 182, 282, 309
DdeI CTNAG 1 cut(s) 147
DpnI GATC 2 cut(s) 33, 236
DpnII GATC 2 cut(s) 31, 234
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
EciI GGCGGA 1 cut(s) 305
Eco147I AGGCCT 1 cut(s) 88
Eco47III AGCGCT 1 cut(s) 384
Eco57I CTGAAG 1 cut(s) 354
Eco88I CYCGRG 1 cut(s) 134
FaeI CATG 3 cut(s) 75, 178, 210
FaiI YATR 5 cut(s) 41, 73, 176, 208, 391
FalI AAGNNNNNCTT 2 cut(s) 106, 138
FatI CATG 3 cut(s) 71, 174, 206
FauI CCCGC 1 cut(s) 257
Fnu4HI GCNGC 4 cut(s) 51, 180, 252, 280
FokI GGATG 1 cut(s) 151
Fsp4HI GCNGC 4 cut(s) 51, 180, 252, 280
FspBI CTAG 2 cut(s) 90, 398
GlaI GCGC 1 cut(s) 384
GluI GCNGC 4 cut(s) 51, 180, 252, 280
HaeII RGCGCY 1 cut(s) 386
HaeIII GGCC 3 cut(s) 88, 282, 309
HgaI GACGC 1 cut(s) 236
HhaI GCGC 1 cut(s) 385
Hin1II CATG 3 cut(s) 75, 178, 210
Hin6I GCGC 1 cut(s) 383
HinP1I GCGC 1 cut(s) 383
HinfI GANTC 1 cut(s) 4
Hpy166II GTNNAC 1 cut(s) 395
Hpy188I TCNGA 3 cut(s) 22, 36, 200
Hpy188III TCNNGA 2 cut(s) 8, 136
Hpy8I GTNNAC 1 cut(s) 395
Hpy99I CGWCG 2 cut(s) 66, 291
HpyAV CCTTC 3 cut(s) 104, 159, 364
HpyCH4V TGCA 3 cut(s) 210, 240, 251
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 227, 315, 380
HpyF3I CTNAG 1 cut(s) 147
Hsp92II CATG 3 cut(s) 75, 178, 210
HspAI GCGC 1 cut(s) 383
Kzo9I GATC 2 cut(s) 31, 234
LmnI GCTCC 1 cut(s) 68
LpnPI CCDG 3 cut(s) 147, 168, 393
Lsp1109I GCAGC 2 cut(s) 37, 263
LweI GCATC 1 cut(s) 239
MaeI CTAG 2 cut(s) 90, 398
MalI GATC 2 cut(s) 33, 236
MboI GATC 2 cut(s) 31, 234
MboII GAAGA 1 cut(s) 126
MflI RGATCY 1 cut(s) 31
MluCI AATT 1 cut(s) 327
MmeI TCCRAC 1 cut(s) 59
MseI TTAA 1 cut(s) 335
MslI CAYNNNNRTG 1 cut(s) 76
MwoI GCNNNNNNNGC 4 cut(s) 50, 227, 315, 380
NdeII GATC 2 cut(s) 31, 234
NlaIII CATG 3 cut(s) 75, 178, 210
NlaIV GGNNCC 2 cut(s) 33, 308
NmeAIII GCCGAG 1 cut(s) 247
PceI AGGCCT 1 cut(s) 88
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 4 cut(s) 52, 181, 253, 281
PspN4I GGNNCC 2 cut(s) 33, 308
PspPI GGNCC 1 cut(s) 307
PsuI RGATCY 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 76
SaqAI TTAA 1 cut(s) 335
SatI GCNGC 4 cut(s) 51, 180, 252, 280
Sau3AI GATC 2 cut(s) 31, 234
Sau96I GGNCC 1 cut(s) 307
SetI ASST 3 cut(s) 205, 302, 315
SfaNI GCATC 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 76
Sse9I AATT 1 cut(s) 327
SseBI AGGCCT 1 cut(s) 88
SsiI CCGC 4 cut(s) 179, 264, 279, 316
SspMI CTAG 2 cut(s) 90, 398
StuI AGGCCT 1 cut(s) 88
TaqI TCGA 2 cut(s) 9, 233
TasI AATT 1 cut(s) 327
TauI GCSGC 2 cut(s) 182, 282
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 335
Tru9I TTAA 1 cut(s) 335
TseI GCWGC 2 cut(s) 50, 251
TspDTI ATGAA 2 cut(s) 195, 346
TspGWI ACGGA 1 cut(s) 275
XapI RAATTY 1 cut(s) 327
XspI CTAG 2 cut(s) 90, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.