Rh6DG420200
BZIP Family

Ocs element-binding factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0021501
Physical Location & Seq
Forward (+)
60259114 .. 60261297
2184 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG420200.1

Sequence Viewer

Length: 882 bp
ATGGAGGCTGAGAGTGGCGAAGCCAGAAGGGCGATCATGACTGCTGGTGGCGGCGAAATCGGAGGTTCGTCCAAGGCACCAGCCGACAACTCATCGATCTGCAGGTCTGAAAGGTATTGCGGTAGGGTGGCTGCAAACACCGGTGAAGCAGCTCCAGTTCGGATTCCCAAACTTGATTGGGTGCCCAGATCAAAGTGGTTGCCCAATGTTTTAGGGTTTGAAACATTTTGGGGGCCCAATGCTGCTGAGGATGTTTTTTGGACCTGGGCGTGTAAGCAGAACGAGCATTTGGGCTCAGGCTCCCTCACTTTTCGTATTTGGGATTTCGGAGTCGATCTTCTAATTCTGTTTGATATCATCGATCTTTTTCCGGGTGTCATCATATATATGGCATCTTCGAGTGGAAACTCGTCCGGCTCTCAGCTTCTTCAGAATTCCGGGTCCGAAGGGGACCTTCAGCTTGTGATGGATCAGCGAAAGAGGAAGAGAATGCAGTCCAACCGGGAATCGGCGCGGCGGTCGCGGATGCGAAAACAGCAGCACTTGGATGAGCTGACGGCTCAGGTGACCCAGCTGAGGAAGGAAAACGGTCAAATCCTGACCAGCATAAACATCACCACCCAGCACTACATGAACGTGGAGGCCGAGAATTCGGTTCTCAGGGCCCAGATGGCGGAGCTCAGCCAGAGACTGGAGTCTCTGACCGAGATCCTCAACTATATCAACGGCAACAATAATAATGGGGTGTTTGAAACCGAACCGGGCCAGCTGCTTCAGACCGGCTCCACCGCTGCTGATCATAATAGCTTCATGAACCCTTGGAATAATTCGCTCTATTCAAACCAGCCCATCATGGCAGCTGCAGACATGCTTCAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

293

Amino Acids

32.6

Weight (kDa)

5.51

Isoelectric Point (pI)

51.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 157 - 202 1.9e-07 Basic region leucine zipper
bZIP_1 PF00170 159 - 213 9.6e-11 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021501)

Species Orthologous Gene IDs
rosa_laevigata RLG00000002799
rosa_multiflora Rmu_sc0034111.1_g000001
rosa_rugosa Rorug06G0307600
rosa_samantha Rh6CG433500 Rh6DG420200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 93
AccB1I GGYRCC 2 cut(s) 76, 181
AccB7I CCANNNNNTGG 1 cut(s) 691
AccII CGCG 2 cut(s) 514, 523
AciI CCGC 7 cut(s) 51, 120, 514, 517, 523, 674, 789
AclWI GGATC 2 cut(s) 477, 703
AcsI RAATTY 2 cut(s) 433, 649
AcuI CTGAAG 4 cut(s) 413, 440, 758, 857
AfaI GTAC 1 cut(s) 878
AfiI CCNNNNNNNGG 4 cut(s) 508, 576, 673, 691
AgeI ACCGGT 1 cut(s) 140
AgsI TTSAA 3 cut(s) 221, 752, 840
AjnI CCWGG 1 cut(s) 263
AjuI GAANNNNNNNTTGG 2 cut(s) 272, 304
AluBI AGCT 9 cut(s) 152, 424, 460, 553, 574, 679, 769, 807, 860
AluI AGCT 9 cut(s) 152, 424, 460, 553, 574, 679, 769, 807, 860
Alw21I GWGCWC 1 cut(s) 681
Alw26I GTCTC 2 cut(s) 682, 702
AlwI GGATC 2 cut(s) 477, 703
AlwNI CAGNNNCTG 1 cut(s) 691
AoxI GGCC 4 cut(s) 233, 642, 663, 763
ApaI GGGCCC 2 cut(s) 237, 667
ApeKI GCWGC 8 cut(s) 131, 149, 242, 538, 769, 791, 857, 860
ApoI RAATTY 2 cut(s) 433, 649
AsiGI ACCGGT 1 cut(s) 140
AspLEI GCGC 1 cut(s) 514
AspS9I GGNCC 8 cut(s) 233, 234, 261, 441, 451, 663, 664, 763
AsuC2I CCSGG 4 cut(s) 372, 439, 503, 762
AsuHPI GGTGA 3 cut(s) 155, 577, 607
AvaII GGWCC 3 cut(s) 261, 441, 451
BaeGI GKGCMC 3 cut(s) 186, 237, 667
BanI GGYRCC 2 cut(s) 76, 181
BanII GRGCYC 4 cut(s) 237, 296, 667, 681
Bbv12I GWGCWC 1 cut(s) 681
BbvCI CCTCAGC 2 cut(s) 246, 575
BbvI GCAGC 8 cut(s) 118, 161, 229, 550, 756, 778, 847, 869
BccI CCATC 3 cut(s) 460, 664, 857
BceAI ACGGC 2 cut(s) 573, 742
BciT130I CCWGG 1 cut(s) 265
BclI TGATCA 1 cut(s) 796
BcnI CCSGG 4 cut(s) 372, 439, 503, 762
BcoDI GTCTC 2 cut(s) 682, 702
BfmI CTRYAG 2 cut(s) 100, 861
BfuAI ACCTGC 1 cut(s) 93
BglI GCCNNNNNGGC 2 cut(s) 29, 671
BlpI GCTNAGC 1 cut(s) 680
BmcAI AGTACT 1 cut(s) 878
Bme1390I CCNGG 5 cut(s) 265, 372, 439, 503, 762
Bme18I GGWCC 3 cut(s) 261, 441, 451
BmgT120I GGNCC 8 cut(s) 233, 234, 261, 441, 451, 663, 664, 763
BmiI GGNNCC 9 cut(s) 78, 183, 234, 235, 301, 442, 452, 665, 784
BmrFI CCNGG 5 cut(s) 265, 372, 439, 503, 762
BmsI GCATC 2 cut(s) 401, 516
BoxI GACNNNNGTC 1 cut(s) 694
BpmI CTGGAG 2 cut(s) 138, 713
Bpu10I CCTNAGC 4 cut(s) 246, 295, 561, 575
Bpu1102I GCTNAGC 1 cut(s) 680
BpuMI CCSGG 4 cut(s) 372, 439, 503, 762
Bsa29I ATCGAT 2 cut(s) 95, 360
BsaJI CCNNGG 3 cut(s) 72, 264, 818
BsaWI WCCGGW 1 cut(s) 140
Bsc4I CCNNNNNNNGG 4 cut(s) 508, 576, 673, 691
Bse118I RCCGGY 2 cut(s) 140, 779
Bse1I ACTGG 2 cut(s) 155, 696
BseBI CCWGG 1 cut(s) 265
BseCI ATCGAT 2 cut(s) 95, 360
BseDI CCNNGG 3 cut(s) 72, 264, 818
BseGI GGATG 3 cut(s) 256, 531, 553
BseLI CCNNNNNNNGG 4 cut(s) 508, 576, 673, 691
BseMII CTCAG 7 cut(s) 237, 309, 434, 566, 575, 673, 694
BseNI ACTGG 2 cut(s) 155, 696
BseSI GKGCMC 3 cut(s) 186, 237, 667
BseXI GCAGC 8 cut(s) 118, 161, 229, 550, 756, 778, 847, 869
BseYI CCCAGC 2 cut(s) 570, 621
Bsh1236I CGCG 2 cut(s) 514, 523
Bsh1285I CGRYCG 1 cut(s) 521
BshFI GGCC 4 cut(s) 235, 644, 665, 765
BshNI GGYRCC 2 cut(s) 76, 181
BshTI ACCGGT 1 cut(s) 140
BshVI ATCGAT 2 cut(s) 95, 360
BsiEI CGRYCG 1 cut(s) 521
BsiHKAI GWGCWC 1 cut(s) 681
BsiSI CCGG 7 cut(s) 141, 371, 414, 438, 502, 761, 780
BslFI GGGAC 1 cut(s) 464
BslI CCNNNNNNNGG 4 cut(s) 508, 576, 673, 691
BsmAI GTCTC 2 cut(s) 682, 702
BsmFI GGGAC 1 cut(s) 464
BsmI GAATGC 1 cut(s) 495
BsnI GGCC 4 cut(s) 235, 644, 665, 765
Bsp120I GGGCCC 2 cut(s) 233, 663
Bsp1286I GDGCHC 5 cut(s) 186, 237, 296, 667, 681
Bsp143I GATC 8 cut(s) 33, 96, 188, 334, 361, 469, 708, 796
Bsp1720I GCTNAGC 1 cut(s) 680
BspACI CCGC 7 cut(s) 51, 120, 514, 517, 523, 674, 789
BspANI GGCC 4 cut(s) 235, 644, 665, 765
BspCNI CTCAG 7 cut(s) 238, 308, 433, 567, 574, 672, 693
BspDI ATCGAT 2 cut(s) 95, 360
BspFNI CGCG 2 cut(s) 514, 523
BspHI TCATGA 2 cut(s) 36, 810
BspLI GGNNCC 9 cut(s) 78, 183, 234, 235, 301, 442, 452, 665, 784
BspMAI CTGCAG 2 cut(s) 104, 865
BspMI ACCTGC 1 cut(s) 93
BspPI GGATC 2 cut(s) 477, 703
BspT107I GGYRCC 2 cut(s) 76, 181
BsrFI RCCGGY 2 cut(s) 140, 779
BsrI ACTGG 2 cut(s) 155, 696
BssAI RCCGGY 2 cut(s) 140, 779
BssECI CCNNGG 3 cut(s) 72, 264, 818
BssMI GATC 8 cut(s) 33, 96, 188, 334, 361, 469, 708, 796
BssT1I CCWWGG 2 cut(s) 72, 818
Bst2UI CCWGG 1 cut(s) 265
Bst4CI ACNGT 1 cut(s) 590
Bst6I CTCTTC 1 cut(s) 479
BstC8I GCNNGC 1 cut(s) 767
BstDEI CTNAG 8 cut(s) 9, 246, 295, 420, 561, 575, 659, 680
BstEII GGTNACC 1 cut(s) 565
BstF5I GGATG 3 cut(s) 256, 531, 553
BstFNI CGCG 2 cut(s) 514, 523
BstHHI GCGC 1 cut(s) 514
BstKTI GATC 8 cut(s) 36, 99, 191, 337, 364, 472, 711, 799
BstMAI GTCTC 2 cut(s) 682, 702
BstMBI GATC 8 cut(s) 33, 96, 188, 334, 361, 469, 708, 796
BstMCI CGRYCG 1 cut(s) 521
BstMWI GCNNNNNNNGC 5 cut(s) 29, 283, 520, 535, 671
BstNI CCWGG 1 cut(s) 265
BstNSI RCATGY 1 cut(s) 871
BstPAI GACNNNNGTC 1 cut(s) 694
BstPI GGTNACC 1 cut(s) 565
BstSCI CCNGG 5 cut(s) 263, 370, 437, 501, 760
BstSFI CTRYAG 2 cut(s) 100, 861
BstSLI GKGCMC 3 cut(s) 186, 237, 667
BstUI CGCG 2 cut(s) 514, 523
BstV1I GCAGC 8 cut(s) 118, 161, 229, 550, 756, 778, 847, 869
BstX2I RGATCY 1 cut(s) 708
BstYI RGATCY 1 cut(s) 708
Bsu15I ATCGAT 2 cut(s) 95, 360
BsuRI GGCC 4 cut(s) 235, 644, 665, 765
BsuTUI ATCGAT 2 cut(s) 95, 360
BtsCI GGATG 3 cut(s) 256, 531, 553
BveI ACCTGC 1 cut(s) 93
Cac8I GCNNGC 1 cut(s) 767
CaiI CAGNNNCTG 1 cut(s) 691
CciI TCATGA 2 cut(s) 36, 810
CfoI GCGC 1 cut(s) 514
Cfr10I RCCGGY 2 cut(s) 140, 779
Cfr13I GGNCC 8 cut(s) 233, 234, 261, 441, 451, 663, 664, 763
ClaI ATCGAT 2 cut(s) 95, 360
Csp6I GTAC 1 cut(s) 877
CspAI ACCGGT 1 cut(s) 140
CviAII CATG 5 cut(s) 37, 631, 811, 853, 868
CviQI GTAC 1 cut(s) 877
DdeI CTNAG 8 cut(s) 9, 246, 295, 420, 561, 575, 659, 680
DpnI GATC 8 cut(s) 35, 98, 190, 336, 363, 471, 710, 798
DpnII GATC 8 cut(s) 33, 96, 188, 334, 361, 469, 708, 796
Eam1104I CTCTTC 1 cut(s) 479
EarI CTCTTC 1 cut(s) 479
EciI GGCGGA 1 cut(s) 689
Ecl136II GAGCTC 1 cut(s) 679
Eco130I CCWWGG 2 cut(s) 72, 818
Eco24I GRGCYC 4 cut(s) 237, 296, 667, 681
Eco32I GATATC 1 cut(s) 355
Eco47I GGWCC 3 cut(s) 261, 441, 451
Eco53kI GAGCTC 1 cut(s) 679
Eco57I CTGAAG 4 cut(s) 413, 440, 758, 857
Eco91I GGTNACC 1 cut(s) 565
EcoICRI GAGCTC 1 cut(s) 679
EcoO109I RGGNCCY 3 cut(s) 233, 451, 663
EcoO65I GGTNACC 1 cut(s) 565
EcoRI GAATTC 2 cut(s) 433, 649
EcoRII CCWGG 1 cut(s) 263
EcoRV GATATC 1 cut(s) 355
EcoT14I CCWWGG 2 cut(s) 72, 818
EcoT38I GRGCYC 4 cut(s) 237, 296, 667, 681
ErhI CCWWGG 2 cut(s) 72, 818
FaeI CATG 5 cut(s) 40, 634, 814, 856, 871
FalI AAGNNNNNCTT 2 cut(s) 438, 470
FaqI GGGAC 1 cut(s) 464
FatI CATG 5 cut(s) 36, 630, 810, 852, 867
FbaI TGATCA 1 cut(s) 796
FokI GGATG 3 cut(s) 263, 538, 560
FriOI GRGCYC 4 cut(s) 237, 296, 667, 681
GlaI GCGC 1 cut(s) 513
GsaI CCCAGC 2 cut(s) 574, 625
GsuI CTGGAG 2 cut(s) 138, 713
HaeIII GGCC 4 cut(s) 235, 644, 665, 765
HapII CCGG 7 cut(s) 141, 371, 414, 438, 502, 761, 780
HhaI GCGC 1 cut(s) 514
Hin1II CATG 5 cut(s) 40, 634, 814, 856, 871
Hin6I GCGC 1 cut(s) 512
HinP1I GCGC 1 cut(s) 512
HinfI GANTC 4 cut(s) 163, 330, 506, 695
HpaII CCGG 7 cut(s) 141, 371, 414, 438, 502, 761, 780
HphI GGTGA 3 cut(s) 155, 577, 607
Hpy188I TCNGA 8 cut(s) 62, 109, 162, 329, 432, 445, 702, 777
Hpy188III TCNNGA 3 cut(s) 37, 598, 811
HpyAV CCTTC 4 cut(s) 21, 440, 464, 574
HpyCH4III ACNGT 1 cut(s) 590
HpyCH4IV ACGT 1 cut(s) 636
HpyCH4V TGCA 4 cut(s) 102, 134, 493, 863
HpyF10VI GCNNNNNNNGC 5 cut(s) 29, 283, 520, 535, 671
HpyF3I CTNAG 8 cut(s) 9, 246, 295, 420, 561, 575, 659, 680
HpySE526I ACGT 1 cut(s) 636
Hsp92II CATG 5 cut(s) 40, 634, 814, 856, 871
HspAI GCGC 1 cut(s) 512
Ksp22I TGATCA 1 cut(s) 796
Kzo9I GATC 8 cut(s) 33, 96, 188, 334, 361, 469, 708, 796
LmnI GCTCC 4 cut(s) 157, 305, 676, 788
Lsp1109I GCAGC 8 cut(s) 118, 161, 229, 550, 756, 778, 847, 869
LweI GCATC 2 cut(s) 401, 516
MaeII ACGT 1 cut(s) 636
MaeIII GTNAC 1 cut(s) 565
MalI GATC 8 cut(s) 35, 98, 190, 336, 363, 471, 710, 798
MboI GATC 8 cut(s) 33, 96, 188, 334, 361, 469, 708, 796
MboII GAAGA 4 cut(s) 329, 387, 419, 496
MflI RGATCY 1 cut(s) 708
MhlI GDGCHC 5 cut(s) 186, 237, 296, 667, 681
MluCI AATT 4 cut(s) 342, 433, 649, 826
MlyI GAGTC 2 cut(s) 339, 704
MmeI TCCRAC 1 cut(s) 522
MnlI CCTC 7 cut(s) 56, 241, 314, 474, 570, 634, 722
MslI CAYNNNNRTG 3 cut(s) 386, 546, 635
MspA1I CMGCKG 4 cut(s) 574, 769, 791, 860
MspI CCGG 7 cut(s) 141, 371, 414, 438, 502, 761, 780
MspR9I CCNGG 5 cut(s) 265, 372, 439, 503, 762
Mva1269I GAATGC 1 cut(s) 495
MvaI CCWGG 1 cut(s) 265
MvnI CGCG 2 cut(s) 514, 523
MwoI GCNNNNNNNGC 5 cut(s) 29, 283, 520, 535, 671
NciI CCSGG 4 cut(s) 372, 439, 503, 762
NdeII GATC 8 cut(s) 33, 96, 188, 334, 361, 469, 708, 796
NlaIII CATG 5 cut(s) 40, 634, 814, 856, 871
NlaIV GGNNCC 9 cut(s) 78, 183, 234, 235, 301, 442, 452, 665, 784
NmeAIII GCCGAG 1 cut(s) 670
NmuCI GTSAC 1 cut(s) 565
NspI RCATGY 1 cut(s) 871
PagI TCATGA 2 cut(s) 36, 810
PcsI WCGNNNNNNNCGW 1 cut(s) 642
PctI GAATGC 1 cut(s) 495
PfeI GAWTC 2 cut(s) 163, 506
PflMI CCANNNNNTGG 1 cut(s) 691
PinAI ACCGGT 1 cut(s) 140
PleI GAGTC 2 cut(s) 338, 703
PpsI GAGTC 2 cut(s) 338, 703
PpuMI RGGWCCY 1 cut(s) 451
PshAI GACNNNNGTC 1 cut(s) 694
Psp124BI GAGCTC 1 cut(s) 681
Psp5II RGGWCCY 1 cut(s) 451
Psp6I CCWGG 1 cut(s) 263
PspEI GGTNACC 1 cut(s) 565
PspFI CCCAGC 2 cut(s) 570, 621
PspGI CCWGG 1 cut(s) 263
PspN4I GGNNCC 9 cut(s) 78, 183, 234, 235, 301, 442, 452, 665, 784
PspOMI GGGCCC 2 cut(s) 233, 663
PspPI GGNCC 8 cut(s) 233, 234, 261, 441, 451, 663, 664, 763
PspPPI RGGWCCY 1 cut(s) 451
PstI CTGCAG 2 cut(s) 104, 865
PstNI CAGNNNCTG 1 cut(s) 691
PsuI RGATCY 1 cut(s) 708
PvuII CAGCTG 3 cut(s) 574, 769, 860
RsaI GTAC 1 cut(s) 878
RsaNI GTAC 1 cut(s) 877
RseI CAYNNNNRTG 3 cut(s) 386, 546, 635
SacI GAGCTC 1 cut(s) 681
Sau3AI GATC 8 cut(s) 33, 96, 188, 334, 361, 469, 708, 796
Sau96I GGNCC 8 cut(s) 233, 234, 261, 441, 451, 663, 664, 763
ScaI AGTACT 1 cut(s) 878
SchI GAGTC 2 cut(s) 339, 704
ScrFI CCNGG 5 cut(s) 265, 372, 439, 503, 762
SduI GDGCHC 5 cut(s) 186, 237, 296, 667, 681
SfaNI GCATC 2 cut(s) 401, 516
SfcI CTRYAG 2 cut(s) 100, 861
SgrAI CRCCGGYG 1 cut(s) 140
SinI GGWCC 3 cut(s) 261, 441, 451
SmiMI CAYNNNNRTG 3 cut(s) 386, 546, 635
Sse9I AATT 4 cut(s) 342, 433, 649, 826
SsiI CCGC 7 cut(s) 51, 120, 514, 517, 523, 674, 789
SstI GAGCTC 1 cut(s) 681
StyD4I CCNGG 5 cut(s) 263, 370, 437, 501, 760
StyI CCWWGG 2 cut(s) 72, 818
TaaI ACNGT 1 cut(s) 590
TaiI ACGT 1 cut(s) 639
TaqI TCGA 4 cut(s) 95, 333, 360, 398
TaqII GACCGA 1 cut(s) 719
TasI AATT 4 cut(s) 342, 433, 649, 826
TatI WGTACW 1 cut(s) 876
TauI GCSGC 2 cut(s) 54, 517
TfiI GAWTC 2 cut(s) 163, 506
TseFI GTSAC 1 cut(s) 565
TseI GCWGC 8 cut(s) 131, 149, 242, 538, 769, 791, 857, 860
Tsp45I GTSAC 1 cut(s) 565
TspDTI ATGAA 3 cut(s) 647, 799, 827
Van91I CCANNNNNTGG 1 cut(s) 691
VpaK11BI GGWCC 3 cut(s) 261, 441, 451
XapI RAATTY 2 cut(s) 433, 649
XceI RCATGY 1 cut(s) 871
ZrmI AGTACT 1 cut(s) 878
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.