Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0021501

Physical Location & Seq

Genomic Coordinates Forward (+)

61385787 .. 61393627

Gene Structure 7841 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG433500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGCATGTAATTGCCCACGACCCTTATGCTCCGGTAGATCATGCTCGTGCCATAGGTGTGGAGCTTGCTGTGAGCATTGATGAGGTTTTGGCCAGTACATACCTGGATATGCATCTTATTGCTGCTACAAATACGGTTCTCAACGATGAGACATTTACAAAGATGAAGAAAGGAGTAGGAATTGTGGATGTTGCACGTGGTGGAGTTATCGATGAAGATGCACTAGTCAAGGCACTTGTTTTCCACAGTCGCTCAGGCGGCAGAGAAGGAAGAGTGGTTTTTTTTCGGCTCGGGATGGAGGCTGAGAGTGGCGAAGCCAGAAGGGAGATCATGATGGCTGGTAGCGGTGAAATCGGAGGTTCGTCCAAGGTAGCAGCTGACAACTCATCGATCTGCAGGTTTGAAAGGTATTGCGGCGGGGTGGTTGCAAACATCGGTGAAGCAGCTCCAATTCAGATTCCCAAACTTGATTGGGTGCCCAGTTCAAAGTGTTGCCCAATGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0003006 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008144 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009553 GO:0009555 GO:0009561 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0017076 GO:0022414 GO:0030554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00680 ko01100 ko01120 ko01130 ko01200 ko01230 map00260 map00680 map01100 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C ACT

Protein Analysis

168

Amino Acids

17.95

Weight (kDa)

5.51

Isoelectric Point (pI)

38.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-Hacid_dh_C	PF02826	1 - 79	8.9e-14	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021501)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000002799
rosa_multiflora	Rmu_sc0034111.1_g000001
rosa_rugosa	Rorug06G0307600
rosa_samantha	Rh6CG433500 Rh6DG420200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	387
AccB1I	GGYRCC	1 cut(s)	475
AciI	CCGC	4 cut(s)	258, 345, 414, 417
AcoI	YGGCCR	1 cut(s)	90
AcvI	CACGTG	1 cut(s)	197
AdeI	CACNNNGTG	1 cut(s)	200
AfaI	GTAC	1 cut(s)	97
AgsI	TTSAA	2 cut(s)	404, 486
AhlI	ACTAGT	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	3 cut(s)	64, 377, 446
AluI	AGCT	3 cut(s)	64, 377, 446
Alw26I	GTCTC	1 cut(s)	143
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	3 cut(s)	122, 374, 443
AsuHPI	GGTGA	2 cut(s)	359, 449
AvaI	CYCGRG	1 cut(s)	290
BaeGI	GKGCMC	1 cut(s)	480
BalI	TGGCCA	1 cut(s)	92
BanI	GGYRCC	1 cut(s)	475
BauI	CACGAG	1 cut(s)	45
BbrPI	CACGTG	1 cut(s)	197
BbvI	GCAGC	3 cut(s)	109, 386, 455
BccI	CCATC	2 cut(s)	289, 328
BcgI	CGANNNNNNTGC	4 cut(s)	8, 42, 200, 234
BciT130I	CCWGG	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	143
BcuI	ACTAGT	1 cut(s)	223
BfaI	CTAG	1 cut(s)	224
BfmI	CTRYAG	1 cut(s)	394
BfuAI	ACCTGC	1 cut(s)	387
BisI	GCNGC	5 cut(s)	123, 259, 375, 415, 444
BlsI	GCNGC	5 cut(s)	124, 260, 376, 416, 445
Bme1390I	CCNGG	1 cut(s)	104
BmeT110I	CYCGRG	1 cut(s)	290
BmiI	GGNNCC	1 cut(s)	477
BmrFI	CCNGG	1 cut(s)	104
BmrI	ACTGGG	1 cut(s)	474
BmsI	GCATC	2 cut(s)	121, 208
BmuI	ACTGGG	1 cut(s)	474
Bpu10I	CCTNAGC	1 cut(s)	253
Bsa29I	ATCGAT	2 cut(s)	210, 389
BsaAI	YACGTR	1 cut(s)	197
BsaBI	GATNNNNATC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	366
BsaWI	WCCGGW	1 cut(s)	31
Bse1I	ACTGG	2 cut(s)	93, 480
Bse8I	GATNNNNATC	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	104
BseCI	ATCGAT	2 cut(s)	210, 389
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	2 cut(s)	193, 300
BseJI	GATNNNNATC	1 cut(s)	111
BseMII	CTCAG	2 cut(s)	267, 294
BseNI	ACTGG	2 cut(s)	93, 480
BseSI	GKGCMC	1 cut(s)	480
BseXI	GCAGC	3 cut(s)	109, 386, 455
BshFI	GGCC	1 cut(s)	92
BshNI	GGYRCC	1 cut(s)	475
BshVI	ATCGAT	2 cut(s)	210, 389
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	92
BsoBI	CYCGRG	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	480
Bsp143I	GATC	3 cut(s)	37, 327, 390
BspACI	CCGC	4 cut(s)	258, 345, 414, 417
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	2 cut(s)	266, 295
BspDI	ATCGAT	2 cut(s)	210, 389
BspHI	TCATGA	1 cut(s)	330
BspLI	GGNNCC	1 cut(s)	477
BspMAI	CTGCAG	1 cut(s)	398
BspMI	ACCTGC	1 cut(s)	387
BspT107I	GGYRCC	1 cut(s)	475
BsrI	ACTGG	2 cut(s)	93, 480
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	3 cut(s)	37, 327, 390
BssSI	CACGAG	1 cut(s)	45
BssT1I	CCWWGG	1 cut(s)	366
Bst2BI	CACGAG	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	2 cut(s)	136, 248
Bst6I	CTCTTC	1 cut(s)	265
BstBAI	YACGTR	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	2 cut(s)	253, 303
BstF5I	GGATG	2 cut(s)	193, 300
BstKTI	GATC	3 cut(s)	40, 330, 393
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	3 cut(s)	37, 327, 390
BstMWI	GCNNNNNNNGC	1 cut(s)	258
BstNI	CCWGG	1 cut(s)	104
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	1 cut(s)	394
BstSLI	GKGCMC	1 cut(s)	480
BstV1I	GCAGC	3 cut(s)	109, 386, 455
BstXI	CCANNNNNNTGG	1 cut(s)	58
Bsu15I	ATCGAT	2 cut(s)	210, 389
BsuRI	GGCC	1 cut(s)	92
BsuTUI	ATCGAT	2 cut(s)	210, 389
BtsCI	GGATG	2 cut(s)	193, 300
BveI	ACCTGC	1 cut(s)	387
Cac8I	GCNNGC	1 cut(s)	66
CciI	TCATGA	1 cut(s)	330
ClaI	ATCGAT	2 cut(s)	210, 389
Csp6I	GTAC	1 cut(s)	96
CviAII	CATG	3 cut(s)	5, 41, 331
CviJI	RGCY	8 cut(s)	64, 92, 289, 302, 317, 338, 377, 446
CviKI_1	RGCY	8 cut(s)	64, 92, 289, 302, 317, 338, 377, 446
CviQI	GTAC	1 cut(s)	96
DdeI	CTNAG	2 cut(s)	253, 303
DpnI	GATC	3 cut(s)	39, 329, 392
DpnII	GATC	3 cut(s)	37, 327, 390
DraIII	CACNNNGTG	1 cut(s)	200
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	265
EarI	CTCTTC	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	366
Eco72I	CACGTG	1 cut(s)	197
Eco88I	CYCGRG	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	366
EcoT22I	ATGCAT	2 cut(s)	6, 114
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	3 cut(s)	8, 44, 334
FaiI	YATR	7 cut(s)	6, 27, 42, 53, 100, 110, 332
FatI	CATG	3 cut(s)	4, 40, 330
FauI	CCCGC	1 cut(s)	410
Fnu4HI	GCNGC	5 cut(s)	123, 259, 375, 415, 444
FokI	GGATG	2 cut(s)	200, 307
Fsp4HI	GCNGC	5 cut(s)	123, 259, 375, 415, 444
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	5 cut(s)	123, 259, 375, 415, 444
HaeIII	GGCC	1 cut(s)	92
HapII	CCGG	1 cut(s)	32
Hin1II	CATG	3 cut(s)	8, 44, 334
HinfI	GANTC	1 cut(s)	457
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	2 cut(s)	359, 449
Hpy188I	TCNGA	2 cut(s)	356, 456
Hpy188III	TCNNGA	2 cut(s)	292, 331
HpyAV	CCTTC	2 cut(s)	260, 315
HpyCH4III	ACNGT	2 cut(s)	136, 248
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	6 cut(s)	4, 112, 194, 221, 396, 428
HpyF10VI	GCNNNNNNNGC	1 cut(s)	258
HpyF3I	CTNAG	2 cut(s)	253, 303
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	3 cut(s)	8, 44, 334
Kzo9I	GATC	3 cut(s)	37, 327, 390
LmnI	GCTCC	3 cut(s)	34, 61, 451
LpnPI	CCDG	9 cut(s)	45, 89, 106, 116, 240, 324, 331, 382, 493
Lsp1109I	GCAGC	3 cut(s)	109, 386, 455
LweI	GCATC	2 cut(s)	121, 208
MaeI	CTAG	1 cut(s)	224
MaeII	ACGT	1 cut(s)	196
MalI	GATC	3 cut(s)	39, 329, 392
MboI	GATC	3 cut(s)	37, 327, 390
MboII	GAAGA	3 cut(s)	178, 227, 282
MhlI	GDGCHC	1 cut(s)	480
MlsI	TGGCCA	1 cut(s)	92
MluCI	AATT	3 cut(s)	9, 180, 450
MluNI	TGGCCA	1 cut(s)	92
MnlI	CCTC	3 cut(s)	76, 292, 350
Mox20I	TGGCCA	1 cut(s)	92
Mph1103I	ATGCAT	2 cut(s)	6, 114
MscI	TGGCCA	1 cut(s)	92
MslI	CAYNNNNRTG	2 cut(s)	45, 56
Msp20I	TGGCCA	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	1 cut(s)	258
NdeII	GATC	3 cut(s)	37, 327, 390
NlaIII	CATG	3 cut(s)	8, 44, 334
NlaIV	GGNNCC	1 cut(s)	477
NsiI	ATGCAT	2 cut(s)	6, 114
NspI	RCATGY	1 cut(s)	8
PagI	TCATGA	1 cut(s)	330
PfeI	GAWTC	1 cut(s)	457
PkrI	GCNGC	5 cut(s)	124, 260, 376, 416, 445
PmaCI	CACGTG	1 cut(s)	197
PmlI	CACGTG	1 cut(s)	197
Ppu21I	YACGTR	1 cut(s)	197
Psp6I	CCWGG	1 cut(s)	102
PspCI	CACGTG	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	477
PstI	CTGCAG	1 cut(s)	398
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
RseI	CAYNNNNRTG	2 cut(s)	45, 56
SatI	GCNGC	5 cut(s)	123, 259, 375, 415, 444
Sau3AI	GATC	3 cut(s)	37, 327, 390
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	480
SfaNI	GCATC	2 cut(s)	121, 208
SfcI	CTRYAG	1 cut(s)	394
SmiMI	CAYNNNNRTG	2 cut(s)	45, 56
SpeI	ACTAGT	1 cut(s)	223
Sse9I	AATT	3 cut(s)	9, 180, 450
SsiI	CCGC	4 cut(s)	258, 345, 414, 417
SspMI	CTAG	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	2 cut(s)	136, 248
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	2 cut(s)	210, 389
TasI	AATT	3 cut(s)	9, 180, 450
TatI	WGTACW	1 cut(s)	95
TauI	GCSGC	2 cut(s)	261, 417
TfiI	GAWTC	1 cut(s)	457
TseI	GCWGC	3 cut(s)	122, 374, 443
TspDTI	ATGAA	2 cut(s)	179, 228
XceI	RCATGY	1 cut(s)	8
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XspI	CTAG	1 cut(s)	224
Zsp2I	ATGCAT	2 cut(s)	6, 114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.