RLG00000002957

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0025161
Physical Location & Seq
Forward (+)
42255874 .. 42256388
515 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002957

Sequence Viewer

Length: 411 bp
ATGTCACCGGTCTTGCTCTTGTTTATAATCTTCCATAATGTCACTCTGCCACTGACCCTCCCGGAGCTGCTCAGCTTCAACATCCCGGTATTAAGATCACTGATCAGAGTATTACGACCCTCCAGTAGCCTGTTGGACCTCACATCCATGCCAAAACTCAACCTCGCCGACTTTAGCACTTTGGCTTCCCCCTTCCCCAATCTTGAAGCCCCAACTCTGCTAGCATGGGTACTCCGTGGTGAGATCTTTGTCGAAGGCTCCAAAATATGCTTCTGTTATAGCAAAGATTTTGAGGTAGATTATCCTAACGCCAGTCTTGGCCGTCAAATAAGTAATCAGAACATCTTGAAGCAAGGTCTACATCGTTTGGACCTCATATTTGAATCTCCATCCATTGCAGCTTTCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.26

Weight (kDa)

6.71

Isoelectric Point (pI)

60.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0025161)

Species Orthologous Gene IDs
rosa_laevigata RLG00000002957
rosa_multiflora Rmu_sc0001983.1_g000001
rosa_samantha Rh2BG418200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 26
AccI GTMKAC 1 cut(s) 358
AcoI YGGCCR 1 cut(s) 319
AfaI GTAC 1 cut(s) 231
AgeI ACCGGT 1 cut(s) 7
AgsI TTSAA 4 cut(s) 79, 206, 349, 383
AjuI GAANNNNNNNTTGG 2 cut(s) 254, 286
AluBI AGCT 3 cut(s) 67, 75, 401
AluI AGCT 3 cut(s) 67, 75, 401
AoxI GGCC 1 cut(s) 319
ApeKI GCWGC 2 cut(s) 67, 398
ArsI GACNNNNNNTTYG 2 cut(s) 362, 394
AsiGI ACCGGT 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 136, 370
AsuC2I CCSGG 2 cut(s) 62, 86
AsuHPI GGTGA 1 cut(s) 251
AsuNHI GCTAGC 1 cut(s) 220
AvaII GGWCC 2 cut(s) 136, 370
BbvI GCAGC 1 cut(s) 54
BccI CCATC 1 cut(s) 397
BceAI ACGGC 1 cut(s) 306
BclI TGATCA 1 cut(s) 102
BcnI CCSGG 2 cut(s) 62, 86
BfaI CTAG 1 cut(s) 221
BglII AGATCT 1 cut(s) 243
BisI GCNGC 2 cut(s) 68, 399
BlpI GCTNAGC 1 cut(s) 71
BlsI GCNGC 2 cut(s) 69, 400
Bme1390I CCNGG 2 cut(s) 62, 86
Bme18I GGWCC 2 cut(s) 136, 370
BmgT120I GGNCC 2 cut(s) 136, 370
BmiI GGNNCC 1 cut(s) 259
BmrFI CCNGG 2 cut(s) 62, 86
BmtI GCTAGC 1 cut(s) 224
BpmI CTGGAG 1 cut(s) 106
Bpu1102I GCTNAGC 1 cut(s) 71
BpuMI CCSGG 2 cut(s) 62, 86
BsaJI CCNNGG 1 cut(s) 235
BsaWI WCCGGW 2 cut(s) 7, 405
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bse118I RCCGGY 1 cut(s) 7
Bse1I ACTGG 2 cut(s) 123, 312
Bse3DI GCAATG 1 cut(s) 393
BseDI CCNNGG 1 cut(s) 235
BseGI GGATG 3 cut(s) 81, 143, 389
BseMI GCAATG 1 cut(s) 393
BseMII CTCAG 1 cut(s) 85
BseNI ACTGG 2 cut(s) 123, 312
BseXI GCAGC 1 cut(s) 54
BshFI GGCC 1 cut(s) 321
BshTI ACCGGT 1 cut(s) 7
BsiSI CCGG 4 cut(s) 8, 62, 86, 406
BsnI GGCC 1 cut(s) 321
Bsp143I GATC 3 cut(s) 95, 102, 243
Bsp1720I GCTNAGC 1 cut(s) 71
BspANI GGCC 1 cut(s) 321
BspCNI CTCAG 1 cut(s) 84
BspLI GGNNCC 1 cut(s) 259
BspOI GCTAGC 1 cut(s) 224
BsrDI GCAATG 1 cut(s) 393
BsrFI RCCGGY 1 cut(s) 7
BsrI ACTGG 2 cut(s) 123, 312
BssAI RCCGGY 1 cut(s) 7
BssECI CCNNGG 1 cut(s) 235
BssMI GATC 3 cut(s) 95, 102, 243
BstC8I GCNNGC 1 cut(s) 222
BstDEI CTNAG 1 cut(s) 71
BstDSI CCRYGG 1 cut(s) 235
BstF5I GGATG 3 cut(s) 81, 143, 389
BstKTI GATC 3 cut(s) 98, 105, 246
BstMBI GATC 3 cut(s) 95, 102, 243
BstSCI CCNGG 2 cut(s) 60, 84
BstV1I GCAGC 1 cut(s) 54
BstX2I RGATCY 1 cut(s) 243
BstYI RGATCY 1 cut(s) 243
BsuRI GGCC 1 cut(s) 321
BtgI CCRYGG 1 cut(s) 235
BtsCI GGATG 3 cut(s) 81, 143, 389
BtsIMutI CAGTG 2 cut(s) 50, 98
Cac8I GCNNGC 1 cut(s) 222
Cfr10I RCCGGY 1 cut(s) 7
Cfr13I GGNCC 2 cut(s) 136, 370
Csp6I GTAC 1 cut(s) 230
CspAI ACCGGT 1 cut(s) 7
CviAII CATG 2 cut(s) 148, 225
CviJI RGCY 8 cut(s) 67, 75, 129, 185, 209, 258, 321, 401
CviKI_1 RGCY 8 cut(s) 67, 75, 129, 185, 209, 258, 321, 401
CviQI GTAC 1 cut(s) 230
DdeI CTNAG 1 cut(s) 71
DpnI GATC 3 cut(s) 97, 104, 245
DpnII GATC 3 cut(s) 95, 102, 243
EaeI YGGCCR 1 cut(s) 319
Eco47I GGWCC 2 cut(s) 136, 370
FaeI CATG 2 cut(s) 151, 228
FaiI YATR 7 cut(s) 26, 36, 149, 226, 268, 279, 377
FatI CATG 2 cut(s) 147, 224
FbaI TGATCA 1 cut(s) 102
FblI GTMKAC 1 cut(s) 358
Fnu4HI GCNGC 2 cut(s) 68, 399
FokI GGATG 3 cut(s) 68, 130, 376
Fsp4HI GCNGC 2 cut(s) 68, 399
FspBI CTAG 1 cut(s) 221
GluI GCNGC 2 cut(s) 68, 399
GsuI CTGGAG 1 cut(s) 106
HaeIII GGCC 1 cut(s) 321
HapII CCGG 4 cut(s) 8, 62, 86, 406
Hin1II CATG 2 cut(s) 151, 228
HinfI GANTC 1 cut(s) 383
HpaII CCGG 4 cut(s) 8, 62, 86, 406
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 1 cut(s) 359
Hpy188I TCNGA 2 cut(s) 107, 339
Hpy188III TCNNGA 2 cut(s) 203, 346
Hpy8I GTNNAC 1 cut(s) 359
HpyAV CCTTC 2 cut(s) 202, 248
HpyCH4V TGCA 1 cut(s) 398
HpyF3I CTNAG 1 cut(s) 71
Hsp92II CATG 2 cut(s) 151, 228
Ksp22I TGATCA 1 cut(s) 102
Kzo9I GATC 3 cut(s) 95, 102, 243
LmnI GCTCC 2 cut(s) 64, 263
LpnPI CCDG 6 cut(s) 21, 75, 99, 136, 143, 325
Lsp1109I GCAGC 1 cut(s) 54
MaeI CTAG 1 cut(s) 221
MaeIII GTNAC 2 cut(s) 3, 40
MalI GATC 3 cut(s) 97, 104, 245
MboI GATC 3 cut(s) 95, 102, 243
MboII GAAGA 1 cut(s) 22
MflI RGATCY 1 cut(s) 243
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 6 cut(s) 68, 130, 149, 173, 286, 383
MseI TTAA 1 cut(s) 92
MslI CAYNNNNRTG 1 cut(s) 146
MspI CCGG 4 cut(s) 8, 62, 86, 406
MspR9I CCNGG 2 cut(s) 62, 86
NciI CCSGG 2 cut(s) 62, 86
NdeII GATC 3 cut(s) 95, 102, 243
NheI GCTAGC 1 cut(s) 220
NlaIII CATG 2 cut(s) 151, 228
NlaIV GGNNCC 1 cut(s) 259
NmuCI GTSAC 2 cut(s) 3, 40
PfeI GAWTC 1 cut(s) 383
PfoI TCCNGGA 1 cut(s) 60
PinAI ACCGGT 1 cut(s) 7
PkrI GCNGC 2 cut(s) 69, 400
PsiI TTATAA 1 cut(s) 26
PspN4I GGNNCC 1 cut(s) 259
PspPI GGNCC 2 cut(s) 136, 370
PsuI RGATCY 1 cut(s) 243
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
RseI CAYNNNNRTG 1 cut(s) 146
SaqAI TTAA 1 cut(s) 92
SatI GCNGC 2 cut(s) 68, 399
Sau3AI GATC 3 cut(s) 95, 102, 243
Sau96I GGNCC 2 cut(s) 136, 370
ScrFI CCNGG 2 cut(s) 62, 86
SetI ASST 8 cut(s) 69, 77, 141, 165, 297, 358, 375, 403
SinI GGWCC 2 cut(s) 136, 370
SmiMI CAYNNNNRTG 1 cut(s) 146
SspMI CTAG 1 cut(s) 221
StyD4I CCNGG 2 cut(s) 60, 84
TaqI TCGA 1 cut(s) 252
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TscAI CASTG 2 cut(s) 57, 105
TseFI GTSAC 2 cut(s) 3, 40
TseI GCWGC 2 cut(s) 67, 398
Tsp45I GTSAC 2 cut(s) 3, 40
TspGWI ACGGA 1 cut(s) 224
TspRI CASTG 2 cut(s) 57, 105
VpaK11BI GGWCC 2 cut(s) 136, 370
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
XmiI GTMKAC 1 cut(s) 358
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.