Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0025161

Physical Location & Seq

Genomic Coordinates Reverse (-)

58958075 .. 58962180

Gene Structure 4106 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG418200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGTACATCCAGCCACAGGGTACTCAGTAGTGAGATCTTTGTCGGAGGCTCCAAAATATGCTTCTGTGATTGCAAAGATTTTGAAGCAGGATTGTCCTAAGGCCAGTCTTAGCCATCAAATAAGAAATCAGAATATCTCAATGCAAGGTATACATCGTTTGGACTTCATACTTGAATCTCCATTGCTGCTTTCCAATGATAATTTTTTTAGAAAGGAAGCTTACATGTTAACATCTGTTTGCCTCTCCACATTTTGTAATTTAGGATTGATGACTATAAATCATTCGAATTATGATTCTTATGTTTTCCTTACTTGGCTGTCAGACTACCCTTTAGTGAATCAATTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009975 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016853 GO:0016860 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045435 GO:0046148 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

Lycopene_cycl

Protein Analysis

117

Amino Acids

13.34

Weight (kDa)

7.75

Isoelectric Point (pI)

43.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lycopene_cycl	PF05834	1 - 50	9.8e-11	Lycopene cyclase protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0025161)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000002957
rosa_multiflora	Rmu_sc0001983.1_g000001
rosa_samantha	Rh2BG418200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	151
AfaI	GTAC	2 cut(s)	6, 23
AfiI	CCNNNNNNNGG	1 cut(s)	17
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	2 cut(s)	85, 176
AjuI	GAANNNNNNNTTGG	2 cut(s)	46, 78
AluBI	AGCT	1 cut(s)	221
AluI	AGCT	1 cut(s)	221
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	187
AsuII	TTCGAA	1 cut(s)	287
AxyI	CCTNAGG	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	174
BccI	CCATC	1 cut(s)	123
BglII	AGATCT	1 cut(s)	35
BisI	GCNGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	189
BmiI	GGNNCC	1 cut(s)	51
Bpu14I	TTCGAA	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse1I	ACTGG	1 cut(s)	105
Bse21I	CCTNAGG	1 cut(s)	99
Bse3DI	GCAATG	1 cut(s)	182
BseGI	GGATG	1 cut(s)	7
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseMI	GCAATG	1 cut(s)	182
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	174
BshFI	GGCC	1 cut(s)	104
BslI	CCNNNNNNNGG	1 cut(s)	17
BsnI	GGCC	1 cut(s)	104
Bsp119I	TTCGAA	1 cut(s)	287
Bsp143I	GATC	1 cut(s)	35
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	1 cut(s)	38
BspLI	GGNNCC	1 cut(s)	51
BspT104I	TTCGAA	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	105
BssMI	GATC	1 cut(s)	35
BssNAI	GTATAC	1 cut(s)	152
Bst1107I	GTATAC	1 cut(s)	152
BstBI	TTCGAA	1 cut(s)	287
BstDEI	CTNAG	3 cut(s)	25, 99, 110
BstF5I	GGATG	1 cut(s)	7
BstKTI	GATC	1 cut(s)	38
BstMBI	GATC	1 cut(s)	35
BstNSI	RCATGY	1 cut(s)	229
BstV1I	GCAGC	1 cut(s)	174
BstX2I	RGATCY	1 cut(s)	35
BstYI	RGATCY	1 cut(s)	35
BstZ17I	GTATAC	1 cut(s)	152
Bsu36I	CCTNAGG	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	104
BtsCI	GGATG	1 cut(s)	7
Csp6I	GTAC	2 cut(s)	5, 22
CviAII	CATG	1 cut(s)	226
CviJI	RGCY	6 cut(s)	14, 50, 104, 114, 221, 319
CviKI_1	RGCY	6 cut(s)	14, 50, 104, 114, 221, 319
CviQI	GTAC	2 cut(s)	5, 22
DdeI	CTNAG	3 cut(s)	25, 99, 110
DpnI	GATC	1 cut(s)	37
DpnII	GATC	1 cut(s)	35
Eco81I	CCTNAGG	1 cut(s)	99
FaeI	CATG	1 cut(s)	229
FaiI	YATR	7 cut(s)	60, 152, 170, 227, 278, 294, 303
FatI	CATG	1 cut(s)	225
FblI	GTMKAC	1 cut(s)	151
Fnu4HI	GCNGC	1 cut(s)	188
Fsp4HI	GCNGC	1 cut(s)	188
GluI	GCNGC	1 cut(s)	188
HaeIII	GGCC	1 cut(s)	104
Hin1II	CATG	1 cut(s)	229
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HindIII	AAGCTT	1 cut(s)	219
HinfI	GANTC	3 cut(s)	176, 296, 340
HpaI	GTTAAC	1 cut(s)	231
Hpy166II	GTNNAC	2 cut(s)	152, 231
Hpy188I	TCNGA	3 cut(s)	46, 132, 325
Hpy8I	GTNNAC	2 cut(s)	152, 231
HpyCH4V	TGCA	2 cut(s)	74, 145
HpyF3I	CTNAG	3 cut(s)	25, 99, 110
Hsp92II	CATG	1 cut(s)	229
KspAI	GTTAAC	1 cut(s)	231
Kzo9I	GATC	1 cut(s)	35
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	4 cut(s)	3, 24, 74, 118
Lsp1109I	GCAGC	1 cut(s)	174
MalI	GATC	1 cut(s)	37
MboI	GATC	1 cut(s)	35
MfeI	CAATTG	1 cut(s)	344
MflI	RGATCY	1 cut(s)	35
MluCI	AATT	4 cut(s)	202, 259, 289, 344
MmeI	TCCRAC	1 cut(s)	24
MnlI	CCTC	2 cut(s)	40, 254
MseI	TTAA	1 cut(s)	230
MunI	CAATTG	1 cut(s)	344
NdeII	GATC	1 cut(s)	35
NlaIII	CATG	1 cut(s)	229
NlaIV	GGNNCC	1 cut(s)	51
NspI	RCATGY	1 cut(s)	229
NspV	TTCGAA	1 cut(s)	287
PciI	ACATGT	1 cut(s)	225
PfeI	GAWTC	3 cut(s)	176, 296, 340
PkrI	GCNGC	1 cut(s)	189
PscI	ACATGT	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	51
PsuI	RGATCY	1 cut(s)	35
RsaI	GTAC	2 cut(s)	6, 23
RsaNI	GTAC	2 cut(s)	5, 22
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	1 cut(s)	188
Sau3AI	GATC	1 cut(s)	35
SetI	ASST	2 cut(s)	151, 223
SfuI	TTCGAA	1 cut(s)	287
SgeI	CNNG	8 cut(s)	23, 30, 101, 117, 158, 185, 238, 327
Sse9I	AATT	4 cut(s)	202, 259, 289, 344
TaqI	TCGA	1 cut(s)	287
TasI	AATT	4 cut(s)	202, 259, 289, 344
TfiI	GAWTC	3 cut(s)	176, 296, 340
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TseI	GCWGC	1 cut(s)	187
TspDTI	ATGAA	1 cut(s)	157
XceI	RCATGY	1 cut(s)	229
XmiI	GTMKAC	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.