Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0018039

Physical Location & Seq

Genomic Coordinates Reverse (-)

63631570 .. 63633358

Gene Structure 1789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004913

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGAAGTTGCAAAGGCTGAAACACCAACACCATCGACGTTCTTCGAAGCTGCCACTAAAAAGAGAAAAGCGACGGAATTTGAAGAACTGGACGCCGATCATGATGCAAGGCTGCGATGGAAATTTGCTAAGGAGCTGAGGCTCTGTGGCGCTTGGTACATGAAAAGGCTCAACGGCAGTGATGTTTGCAAAAGCCAGAAAAGGCTGGCGGTGAGCAAGAGCTGGGTGGTTGAGCAGGTCTTGCCTTTCTTCGCCGCTAGCGCTGCCGCTAGAGTCGAGCGTGGTGAGAGTGAGAGAGTTATTGTTCACGACTGTGAGCAAGACTCACTCCATGTGTTGTATTTAAAGAAACTGAAAACGGGGAGGTTCGTCTTTGTTGGGAGGTGGAAAGATGACTTTGTGATTAGGAGAAATTTGAAGAAGGGCGATGATATTGAATCATTGAATATGAAAAATGAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

155

Amino Acids

17.84

Weight (kDa)

9.28

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12131
rosa_laevigata	RLG00000004913
rosa_multiflora	Rmu_sc0001761.1_g000001 Rmu_sc0030883.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268940
rosa_rugosa	Rorug06G0469000
rosa_samantha	Rh7AG073700 Rh7BG074000 Rh7CG074200 Rh7DG074100
rosa_wichuraiana	Rw7G006160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	226
AciI	CCGC	3 cut(s)	209, 255, 267
AcsI	RAATTY	3 cut(s)	77, 122, 412
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	1 cut(s)	158
AfeI	AGCGCT	1 cut(s)	262
AgsI	TTSAA	4 cut(s)	83, 418, 437, 445
AleI	CACNNNNGTG	1 cut(s)	312
AluBI	AGCT	3 cut(s)	50, 136, 222
AluI	AGCT	3 cut(s)	50, 136, 222
Aor51HI	AGCGCT	1 cut(s)	262
ApeKI	GCWGC	3 cut(s)	50, 112, 263
ApoI	RAATTY	3 cut(s)	77, 122, 412
AspLEI	GCGC	2 cut(s)	152, 263
AsuHPI	GGTGA	2 cut(s)	223, 296
AsuII	TTCGAA	1 cut(s)	45
AsuNHI	GCTAGC	1 cut(s)	257
BbvCI	CCTCAGC	1 cut(s)	137
BbvI	GCAGC	3 cut(s)	37, 99, 250
BccI	CCATC	2 cut(s)	40, 111
BceAI	ACGGC	1 cut(s)	190
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BfaI	CTAG	2 cut(s)	258, 270
BfoI	RGCGCY	2 cut(s)	153, 264
BfuAI	ACCTGC	1 cut(s)	226
BisI	GCNGC	5 cut(s)	51, 113, 255, 264, 267
BlsI	GCNGC	5 cut(s)	52, 114, 256, 265, 268
BmsI	GCATC	1 cut(s)	94
BmtI	GCTAGC	1 cut(s)	261
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
Bpu10I	CCTNAGC	2 cut(s)	129, 137
Bpu14I	TTCGAA	1 cut(s)	45
BsaHI	GRCGYC	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	93
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	93
BseXI	GCAGC	3 cut(s)	37, 99, 250
BseYI	CCCAGC	1 cut(s)	222
Bsp119I	TTCGAA	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	97
BspACI	CCGC	3 cut(s)	209, 255, 267
BspCNI	CTCAG	1 cut(s)	129
BspHI	TCATGA	1 cut(s)	100
BspMI	ACCTGC	1 cut(s)	226
BspOI	GCTAGC	1 cut(s)	261
BspT104I	TTCGAA	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	93
BssMI	GATC	1 cut(s)	97
BssNI	GRCGYC	1 cut(s)	93
Bst4CI	ACNGT	1 cut(s)	314
BstACI	GRCGYC	1 cut(s)	93
BstAPI	GCANNNNNTGC	1 cut(s)	241
BstBI	TTCGAA	1 cut(s)	45
BstC8I	GCNNGC	2 cut(s)	207, 259
BstDEI	CTNAG	2 cut(s)	129, 137
BstH2I	RGCGCY	2 cut(s)	153, 264
BstHHI	GCGC	2 cut(s)	152, 263
BstKTI	GATC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	97
BstMWI	GCNNNNNNNGC	3 cut(s)	241, 260, 263
BstV1I	GCAGC	3 cut(s)	37, 99, 250
BtgZI	GCGATG	2 cut(s)	130, 441
BtsI	GCAGTG	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	184
BveI	ACCTGC	1 cut(s)	226
Cac8I	GCNNGC	2 cut(s)	207, 259
CciI	TCATGA	1 cut(s)	100
CfoI	GCGC	2 cut(s)	152, 263
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	3 cut(s)	101, 160, 332
CviJI	RGCY	9 cut(s)	17, 50, 112, 136, 142, 169, 195, 205, 222
CviKI_1	RGCY	9 cut(s)	17, 50, 112, 136, 142, 169, 195, 205, 222
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	2 cut(s)	129, 137
DpnI	GATC	1 cut(s)	99
DpnII	GATC	1 cut(s)	97
DraI	TTTAAA	1 cut(s)	345
Eco47III	AGCGCT	1 cut(s)	262
FaeI	CATG	3 cut(s)	104, 163, 335
FaiI	YATR	4 cut(s)	102, 161, 333, 449
FatI	CATG	3 cut(s)	100, 159, 331
Fnu4HI	GCNGC	5 cut(s)	51, 113, 255, 264, 267
Fsp4HI	GCNGC	5 cut(s)	51, 113, 255, 264, 267
FspBI	CTAG	2 cut(s)	258, 270
GlaI	GCGC	2 cut(s)	151, 262
GluI	GCNGC	5 cut(s)	51, 113, 255, 264, 267
GsaI	CCCAGC	1 cut(s)	226
HaeII	RGCGCY	2 cut(s)	153, 264
HgaI	GACGC	1 cut(s)	101
HhaI	GCGC	2 cut(s)	152, 263
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	3 cut(s)	104, 163, 335
Hin6I	GCGC	2 cut(s)	150, 261
HinP1I	GCGC	2 cut(s)	150, 261
HinfI	GANTC	3 cut(s)	273, 323, 437
HphI	GGTGA	2 cut(s)	223, 296
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188III	TCNNGA	2 cut(s)	101, 308
Hpy8I	GTNNAC	1 cut(s)	307
Hpy99I	CGWCG	2 cut(s)	40, 76
HpyAV	CCTTC	1 cut(s)	415
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	3 cut(s)	11, 107, 189
HpyF10VI	GCNNNNNNNGC	3 cut(s)	241, 260, 263
HpyF3I	CTNAG	2 cut(s)	129, 137
HpySE526I	ACGT	1 cut(s)	38
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	3 cut(s)	104, 163, 335
HspAI	GCGC	2 cut(s)	150, 261
Kzo9I	GATC	1 cut(s)	97
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	5 cut(s)	74, 191, 208, 209, 221
Lsp1109I	GCAGC	3 cut(s)	37, 99, 250
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	2 cut(s)	258, 270
MaeII	ACGT	1 cut(s)	38
MalI	GATC	1 cut(s)	99
MboI	GATC	1 cut(s)	97
MboII	GAAGA	4 cut(s)	34, 95, 241, 430
MluCI	AATT	4 cut(s)	77, 122, 412, 458
MlyI	GAGTC	2 cut(s)	282, 317
MnlI	CCTC	3 cut(s)	132, 357, 375
MseI	TTAA	1 cut(s)	344
MslI	CAYNNNNRTG	1 cut(s)	312
MwoI	GCNNNNNNNGC	3 cut(s)	241, 260, 263
NdeII	GATC	1 cut(s)	97
NheI	GCTAGC	1 cut(s)	257
NlaIII	CATG	3 cut(s)	104, 163, 335
NspV	TTCGAA	1 cut(s)	45
OliI	CACNNNNGTG	1 cut(s)	312
PagI	TCATGA	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	437
PkrI	GCNGC	5 cut(s)	52, 114, 256, 265, 268
PleI	GAGTC	2 cut(s)	281, 317
PpsI	GAGTC	2 cut(s)	281, 317
PspFI	CCCAGC	1 cut(s)	222
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
RseI	CAYNNNNRTG	1 cut(s)	312
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	5 cut(s)	51, 113, 255, 264, 267
Sau3AI	GATC	1 cut(s)	97
SchI	GAGTC	2 cut(s)	282, 317
SetI	ASST	7 cut(s)	41, 52, 138, 224, 240, 368, 386
SfaNI	GCATC	1 cut(s)	94
SfuI	TTCGAA	1 cut(s)	45
SmiMI	CAYNNNNRTG	1 cut(s)	312
Sse9I	AATT	4 cut(s)	77, 122, 412, 458
SsiI	CCGC	3 cut(s)	209, 255, 267
SspMI	CTAG	2 cut(s)	258, 270
TaaI	ACNGT	1 cut(s)	314
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	3 cut(s)	35, 45, 276
TasI	AATT	4 cut(s)	77, 122, 412, 458
TauI	GCSGC	2 cut(s)	257, 269
TfiI	GAWTC	1 cut(s)	437
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TscAI	CASTG	1 cut(s)	184
TseI	GCWGC	3 cut(s)	50, 112, 263
TspDTI	ATGAA	2 cut(s)	176, 464
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	1 cut(s)	184
XapI	RAATTY	3 cut(s)	77, 122, 412
XspI	CTAG	2 cut(s)	258, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.