Rh7CG074200

Domain of unknown function (DUF313)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0018039
Physical Location & Seq
Forward (+)
5304118 .. 5304726
609 bp
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UTR
Exon/CDS
Intron
Rh7CG074200.1

Sequence Viewer

Length: 489 bp
ATGGAAGTTGCAAAGGCTGAAACACCAACGCCATCGACGTTCTTCGAAGCTGCCACTAAAAAGAGAAAAGCGACGGAAGAACTGGACGCCGATCATGATGCAAGGCTGCGATGGAAATTTGCTAAGGAGCTGAGGCTCTGTGACGCTTGGTACATGAAAAGGCTCAACGGCAGTGATGTTAGCAAAAGCCGGAAAAAGCTGGCGGTGAGCAAGACCTGGGTGGCTGAGCAGGTCTTGACTTTCTTCGCCGCTAGCGCTGCCGCGAGAGTCGAGCGTGGTGAGAGTGAGAGAGTTATTGTTCACGACTGTGAGCAAGACTCACTCCATGTGTTGAATTTGAAGAAGCTGAAAACGGGGAGGTTCGTCTTTGTTGGGAGGTGGAAAGATGACTTTGTGATTAGGAGAAATTTGAAGAAGGGCGATGATATTGGTCTGTGTTGGCACGGAGACGAATCCATGTTCAGTTTTACTGCTTTTTATCGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3 DUF313

Protein Analysis

162

Amino Acids

18.74

Weight (kDa)

9.4

Isoelectric Point (pI)

41.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018039)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g12131
rosa_laevigata RLG00000004913
rosa_multiflora Rmu_sc0001761.1_g000001 Rmu_sc0030883.1_g000001
rosa_roxburghii Rroxscaffold_3G00268940
rosa_rugosa Rorug06G0469000
rosa_samantha Rh7AG073700 Rh7BG074000 Rh7CG074200 Rh7DG074100
rosa_wichuraiana Rw7G006160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 220
AccII CGCG 1 cut(s) 263
AciI CCGC 3 cut(s) 203, 249, 261
AcsI RAATTY 3 cut(s) 116, 334, 406
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 1 cut(s) 152
AfeI AGCGCT 1 cut(s) 256
AgsI TTSAA 3 cut(s) 334, 340, 412
AjnI CCWGG 1 cut(s) 215
AleI CACNNNNGTG 1 cut(s) 306
AluBI AGCT 4 cut(s) 50, 130, 199, 346
AluI AGCT 4 cut(s) 50, 130, 199, 346
Alw26I GTCTC 1 cut(s) 441
Aor51HI AGCGCT 1 cut(s) 256
ApeKI GCWGC 3 cut(s) 50, 106, 257
ApoI RAATTY 3 cut(s) 116, 334, 406
AspLEI GCGC 1 cut(s) 257
AsuHPI GGTGA 2 cut(s) 217, 290
AsuII TTCGAA 1 cut(s) 45
AsuNHI GCTAGC 1 cut(s) 251
BbvCI CCTCAGC 1 cut(s) 131
BbvI GCAGC 3 cut(s) 37, 93, 244
BccI CCATC 2 cut(s) 40, 105
BceAI ACGGC 1 cut(s) 184
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BciT130I CCWGG 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 441
BfaI CTAG 2 cut(s) 252, 487
BfoI RGCGCY 1 cut(s) 258
BfuAI ACCTGC 1 cut(s) 220
BisI GCNGC 5 cut(s) 51, 107, 249, 258, 261
BlpI GCTNAGC 1 cut(s) 225
BlsI GCNGC 5 cut(s) 52, 108, 250, 259, 262
Bme1390I CCNGG 1 cut(s) 217
BmrFI CCNGG 1 cut(s) 217
BmsI GCATC 1 cut(s) 88
BmtI GCTAGC 1 cut(s) 255
BplI GAGNNNNNCTC 2 cut(s) 302, 334
Bpu10I CCTNAGC 2 cut(s) 123, 131
Bpu1102I GCTNAGC 1 cut(s) 225
Bpu14I TTCGAA 1 cut(s) 45
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 216
Bse1I ACTGG 1 cut(s) 87
BseBI CCWGG 1 cut(s) 217
BseDI CCNNGG 1 cut(s) 216
BseMII CTCAG 2 cut(s) 122, 216
BseNI ACTGG 1 cut(s) 87
BseXI GCAGC 3 cut(s) 37, 93, 244
Bsh1236I CGCG 1 cut(s) 263
BsiSI CCGG 1 cut(s) 190
BsmAI GTCTC 1 cut(s) 441
BsmBI CGTCTC 1 cut(s) 441
Bsp119I TTCGAA 1 cut(s) 45
Bsp143I GATC 1 cut(s) 91
Bsp1720I GCTNAGC 1 cut(s) 225
BspACI CCGC 3 cut(s) 203, 249, 261
BspCNI CTCAG 2 cut(s) 123, 217
BspFNI CGCG 1 cut(s) 263
BspHI TCATGA 1 cut(s) 94
BspMI ACCTGC 1 cut(s) 220
BspOI GCTAGC 1 cut(s) 255
BspT104I TTCGAA 1 cut(s) 45
BsrI ACTGG 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 1 cut(s) 91
BssNI GRCGYC 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 217
Bst4CI ACNGT 1 cut(s) 308
BstACI GRCGYC 1 cut(s) 87
BstBI TTCGAA 1 cut(s) 45
BstC8I GCNNGC 2 cut(s) 201, 253
BstDEI CTNAG 3 cut(s) 123, 131, 225
BstFNI CGCG 1 cut(s) 263
BstH2I RGCGCY 1 cut(s) 258
BstHHI GCGC 1 cut(s) 257
BstKTI GATC 1 cut(s) 94
BstMAI GTCTC 1 cut(s) 441
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 2 cut(s) 254, 257
BstNI CCWGG 1 cut(s) 217
BstSCI CCNGG 1 cut(s) 215
BstUI CGCG 1 cut(s) 263
BstV1I GCAGC 3 cut(s) 37, 93, 244
BtgZI GCGATG 2 cut(s) 124, 435
BtsI GCAGTG 1 cut(s) 178
BtsIMutI CAGTG 1 cut(s) 178
BveI ACCTGC 1 cut(s) 220
Cac8I GCNNGC 2 cut(s) 201, 253
CciI TCATGA 1 cut(s) 94
CfoI GCGC 1 cut(s) 257
CseI GACGC 2 cut(s) 95, 152
Csp6I GTAC 1 cut(s) 151
CviAII CATG 4 cut(s) 95, 154, 326, 457
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 3 cut(s) 123, 131, 225
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
Eco47III AGCGCT 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 215
Esp3I CGTCTC 1 cut(s) 441
FaeI CATG 4 cut(s) 98, 157, 329, 460
FaiI YATR 4 cut(s) 96, 155, 327, 458
FatI CATG 4 cut(s) 94, 153, 325, 456
Fnu4HI GCNGC 5 cut(s) 51, 107, 249, 258, 261
Fsp4HI GCNGC 5 cut(s) 51, 107, 249, 258, 261
FspBI CTAG 2 cut(s) 252, 487
GlaI GCGC 1 cut(s) 256
GluI GCNGC 5 cut(s) 51, 107, 249, 258, 261
HaeII RGCGCY 1 cut(s) 258
HapII CCGG 1 cut(s) 190
HgaI GACGC 2 cut(s) 95, 152
HhaI GCGC 1 cut(s) 257
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 4 cut(s) 98, 157, 329, 460
Hin6I GCGC 1 cut(s) 255
HinP1I GCGC 1 cut(s) 255
HinfI GANTC 3 cut(s) 267, 317, 452
HpaII CCGG 1 cut(s) 190
HphI GGTGA 2 cut(s) 217, 290
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 1 cut(s) 483
Hpy188III TCNNGA 3 cut(s) 95, 235, 302
Hpy8I GTNNAC 1 cut(s) 301
Hpy99I CGWCG 2 cut(s) 40, 76
HpyAV CCTTC 1 cut(s) 409
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 2 cut(s) 11, 101
HpyF10VI GCNNNNNNNGC 2 cut(s) 254, 257
HpyF3I CTNAG 3 cut(s) 123, 131, 225
HpySE526I ACGT 1 cut(s) 38
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 4 cut(s) 98, 157, 329, 460
HspAI GCGC 1 cut(s) 255
Kzo9I GATC 1 cut(s) 91
LmnI GCTCC 1 cut(s) 127
LpnPI CCDG 6 cut(s) 68, 185, 202, 203, 215, 229
Lsp1109I GCAGC 3 cut(s) 37, 93, 244
LweI GCATC 1 cut(s) 88
MaeI CTAG 2 cut(s) 252, 487
MaeII ACGT 1 cut(s) 38
MaeIII GTNAC 1 cut(s) 140
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 5 cut(s) 34, 89, 235, 352, 424
MluCI AATT 3 cut(s) 116, 334, 406
MlyI GAGTC 2 cut(s) 276, 311
MnlI CCTC 3 cut(s) 126, 351, 369
MslI CAYNNNNRTG 1 cut(s) 306
MspI CCGG 1 cut(s) 190
MspR9I CCNGG 1 cut(s) 217
MvaI CCWGG 1 cut(s) 217
MvnI CGCG 1 cut(s) 263
MwoI GCNNNNNNNGC 2 cut(s) 254, 257
NdeII GATC 1 cut(s) 91
NheI GCTAGC 1 cut(s) 251
NlaIII CATG 4 cut(s) 98, 157, 329, 460
NmuCI GTSAC 1 cut(s) 140
NspV TTCGAA 1 cut(s) 45
OliI CACNNNNGTG 1 cut(s) 306
PagI TCATGA 1 cut(s) 94
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PfeI GAWTC 1 cut(s) 452
PkrI GCNGC 5 cut(s) 52, 108, 250, 259, 262
PleI GAGTC 2 cut(s) 275, 311
PpsI GAGTC 2 cut(s) 275, 311
Psp6I CCWGG 1 cut(s) 215
PspGI CCWGG 1 cut(s) 215
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
RseI CAYNNNNRTG 1 cut(s) 306
SatI GCNGC 5 cut(s) 51, 107, 249, 258, 261
Sau3AI GATC 1 cut(s) 91
SchI GAGTC 2 cut(s) 276, 311
ScrFI CCNGG 1 cut(s) 217
SetI ASST 9 cut(s) 41, 52, 132, 201, 218, 234, 348, 362, 380
SfaNI GCATC 1 cut(s) 88
SfuI TTCGAA 1 cut(s) 45
SmiMI CAYNNNNRTG 1 cut(s) 306
Sse9I AATT 3 cut(s) 116, 334, 406
SsiI CCGC 3 cut(s) 203, 249, 261
SspMI CTAG 2 cut(s) 252, 487
StyD4I CCNGG 1 cut(s) 215
TaaI ACNGT 1 cut(s) 308
TaiI ACGT 1 cut(s) 41
TaqI TCGA 3 cut(s) 35, 45, 270
TasI AATT 3 cut(s) 116, 334, 406
TauI GCSGC 2 cut(s) 251, 263
TfiI GAWTC 1 cut(s) 452
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 3 cut(s) 50, 106, 257
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 170
TspGWI ACGGA 2 cut(s) 89, 459
TspRI CASTG 1 cut(s) 178
XapI RAATTY 3 cut(s) 116, 334, 406
XspI CTAG 2 cut(s) 252, 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.