RLG00000005367

Protein of unknown function, DUF599

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0014744
Physical Location & Seq
Reverse (-)
67140736 .. 67142181
1446 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005367

Sequence Viewer

Length: 783 bp
ATGGTTAGCTTAGACTGTGTGCTGGTACTAGCGGGTCTGTTTGTGTTGGGAATATACCATGTTTGGCTATTCATCACAGTTCTGCACAATCCCATAAGAACTGTCATTGGCCTCAATGCTTACACTCGTCGACAATGGGTTTTCTCCCTGATGACTGACCCCTTGAAGAATGGTGTTTTGATTGTACAAACTTTACGCAACAACATAATGGCATCGACACTTTTGTCAACGGCAGCAATTACTCTTTGTTCTGTGATCAGTGTACTTGTGAGCAGCGAATCCAGCTCCGATAGCACTGTATCAGTACACCTAGTTTACTCCGATTACGCTCCCTCCTTACCTTCAATCAAGTACTTGTGCATTTTGCTTTGCTTTCTTGTTGCATTTCTCTGCAATGTGCAGTCTACAAGATATTATGCCCATGTCAGCTTCTTGGGTACCGTCCCAACATGGAAAGACAAGACGGGTTTCATCGAGTATGTTGCGGCAACTTTGAATCGAGGATATTACTTTTGGGCCCTTGGATTGCGAGCATTCTACCTCTCGATTCCTCTCTTTCTCTGGATCTTCGGGCCAATACCCATGTTTGTTAGTTGCTGTGTATTGTCAATTGTTCTCTATTTCTTGGACACTACCTCCAGCTTTGCACAACTTATTCATACCCAATTGTTCAAGGAGGAATCAAGAACCGCTGATGTGGAGTCCACCGCTCAATCATTGAACAGTTCTGGTCGTGAGAACTTCTCCCAACTTCGTGATCCTCTACTCACCGGGTCCGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF599

Protein Analysis

261

Amino Acids

28.98

Weight (kDa)

7.59

Isoelectric Point (pI)

35.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF599 PF04654 7 - 214 6.2e-65 Protein of unknown function, DUF599
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 223
Acc65I GGTACC 1 cut(s) 437
AccB1I GGYRCC 1 cut(s) 437
AccBSI CCGCTC 1 cut(s) 710
AccI GTMKAC 2 cut(s) 130, 404
AciI CCGC 4 cut(s) 32, 485, 690, 708
AclWI GGATC 2 cut(s) 572, 752
AfaI GTAC 6 cut(s) 27, 186, 264, 306, 353, 439
AgsI TTSAA 5 cut(s) 166, 345, 496, 673, 721
AluBI AGCT 4 cut(s) 9, 285, 429, 642
AluI AGCT 4 cut(s) 9, 285, 429, 642
AlwI GGATC 2 cut(s) 572, 752
AoxI GGCC 3 cut(s) 109, 516, 572
ApaI GGGCCC 1 cut(s) 520
ApeKI GCWGC 2 cut(s) 233, 273
Asp718I GGTACC 1 cut(s) 437
AspS9I GGNCC 4 cut(s) 516, 517, 572, 774
AsuC2I CCSGG 1 cut(s) 772
AsuHPI GGTGA 1 cut(s) 760
AvaII GGWCC 1 cut(s) 774
BaeGI GKGCMC 1 cut(s) 520
BanI GGYRCC 1 cut(s) 437
BanII GRGCYC 1 cut(s) 520
BbvI GCAGC 2 cut(s) 245, 285
BceAI ACGGC 1 cut(s) 246
BcgI CGANNNNNNTGC 2 cut(s) 464, 498
BclI TGATCA 1 cut(s) 255
BcnI CCSGG 1 cut(s) 772
BfaI CTAG 3 cut(s) 29, 311, 781
BisI GCNGC 3 cut(s) 234, 274, 486
BlsI GCNGC 3 cut(s) 235, 275, 487
BmcAI AGTACT 1 cut(s) 353
Bme1390I CCNGG 1 cut(s) 772
Bme18I GGWCC 1 cut(s) 774
BmgT120I GGNCC 4 cut(s) 516, 517, 572, 774
BmiI GGNNCC 3 cut(s) 439, 518, 775
BmrFI CCNGG 1 cut(s) 772
BmsI GCATC 1 cut(s) 221
BplI GAGNNNNNCTC 2 cut(s) 728, 760
BpmI CTGGAG 1 cut(s) 622
BpuMI CCSGG 1 cut(s) 772
BsaJI CCNNGG 1 cut(s) 520
BsaXI ACNNNNNCTCC 4 cut(s) 317, 347, 620, 650
Bse3DI GCAATG 1 cut(s) 400
BseDI CCNNGG 1 cut(s) 520
BseMI GCAATG 1 cut(s) 400
BseSI GKGCMC 1 cut(s) 520
BseXI GCAGC 2 cut(s) 245, 285
BsgI GTGCAG 2 cut(s) 68, 419
BshFI GGCC 3 cut(s) 111, 518, 574
BshNI GGYRCC 1 cut(s) 437
BsiSI CCGG 2 cut(s) 771, 777
BslFI GGGAC 1 cut(s) 428
BsmFI GGGAC 1 cut(s) 428
BsmI GAATGC 1 cut(s) 533
BsnI GGCC 3 cut(s) 111, 518, 574
Bsp120I GGGCCC 1 cut(s) 516
Bsp1286I GDGCHC 1 cut(s) 520
Bsp1407I TGTACA 1 cut(s) 184
Bsp143I GATC 3 cut(s) 255, 564, 757
BspACI CCGC 4 cut(s) 32, 485, 690, 708
BspANI GGCC 3 cut(s) 111, 518, 574
BspLI GGNNCC 3 cut(s) 439, 518, 775
BspPI GGATC 2 cut(s) 572, 752
BspT107I GGYRCC 1 cut(s) 437
BsrBI CCGCTC 1 cut(s) 710
BsrDI GCAATG 1 cut(s) 400
BsrGI TGTACA 1 cut(s) 184
BssECI CCNNGG 1 cut(s) 520
BssMI GATC 3 cut(s) 255, 564, 757
BssT1I CCWWGG 1 cut(s) 520
Bst4CI ACNGT 6 cut(s) 17, 79, 103, 298, 442, 725
BstAUI TGTACA 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 531
BstDEI CTNAG 1 cut(s) 10
BstKTI GATC 3 cut(s) 258, 567, 760
BstMBI GATC 3 cut(s) 255, 564, 757
BstMWI GCNNNNNNNGC 2 cut(s) 282, 291
BstSCI CCNGG 1 cut(s) 770
BstSLI GKGCMC 1 cut(s) 520
BstV1I GCAGC 2 cut(s) 245, 285
BstX2I RGATCY 1 cut(s) 564
BstYI RGATCY 1 cut(s) 564
BsuRI GGCC 3 cut(s) 111, 518, 574
BtsIMutI CAGTG 2 cut(s) 265, 294
Cac8I GCNNGC 1 cut(s) 531
Cfr13I GGNCC 4 cut(s) 516, 517, 572, 774
Csp6I GTAC 6 cut(s) 26, 185, 263, 305, 352, 438
CviAII CATG 4 cut(s) 59, 422, 450, 583
CviJI RGCY 9 cut(s) 9, 67, 111, 285, 429, 518, 574, 642, 780
CviKI_1 RGCY 9 cut(s) 9, 67, 111, 285, 429, 518, 574, 642, 780
CviQI GTAC 6 cut(s) 26, 185, 263, 305, 352, 438
DdeI CTNAG 1 cut(s) 10
DpnI GATC 3 cut(s) 257, 566, 759
DpnII GATC 3 cut(s) 255, 564, 757
DrdI GACNNNNNNGTC 1 cut(s) 223
DseDI GACNNNNNNGTC 1 cut(s) 223
Eco130I CCWWGG 1 cut(s) 520
Eco24I GRGCYC 1 cut(s) 520
Eco47I GGWCC 1 cut(s) 774
EcoO109I RGGNCCY 1 cut(s) 517
EcoT14I CCWWGG 1 cut(s) 520
EcoT38I GRGCYC 1 cut(s) 520
ErhI CCWWGG 1 cut(s) 520
FaeI CATG 4 cut(s) 62, 425, 453, 586
FaqI GGGAC 1 cut(s) 428
FatI CATG 4 cut(s) 58, 421, 449, 582
FauI CCCGC 1 cut(s) 25
FbaI TGATCA 1 cut(s) 255
FblI GTMKAC 2 cut(s) 130, 404
Fnu4HI GCNGC 3 cut(s) 234, 274, 486
FriOI GRGCYC 1 cut(s) 520
Fsp4HI GCNGC 3 cut(s) 234, 274, 486
FspBI CTAG 3 cut(s) 29, 311, 781
GluI GCNGC 3 cut(s) 234, 274, 486
GsuI CTGGAG 1 cut(s) 622
HaeIII GGCC 3 cut(s) 111, 518, 574
HapII CCGG 2 cut(s) 771, 777
Hin1II CATG 4 cut(s) 62, 425, 453, 586
HincII GTYRAC 2 cut(s) 131, 228
HindII GTYRAC 2 cut(s) 131, 228
HinfI GANTC 5 cut(s) 278, 496, 547, 680, 701
HpaII CCGG 2 cut(s) 771, 777
HphI GGTGA 1 cut(s) 760
Hpy166II GTNNAC 7 cut(s) 131, 228, 263, 307, 316, 405, 705
Hpy188I TCNGA 2 cut(s) 289, 322
Hpy188III TCNNGA 5 cut(s) 544, 562, 684, 734, 755
Hpy8I GTNNAC 7 cut(s) 131, 228, 263, 307, 316, 405, 705
Hpy99I CGWCG 1 cut(s) 132
HpyAV CCTTC 1 cut(s) 351
HpyCH4III ACNGT 6 cut(s) 17, 79, 103, 298, 442, 725
HpyCH4V TGCA 6 cut(s) 85, 360, 383, 393, 400, 647
HpyF10VI GCNNNNNNNGC 2 cut(s) 282, 291
HpyF3I CTNAG 1 cut(s) 10
Hsp92II CATG 4 cut(s) 62, 425, 453, 586
KpnI GGTACC 1 cut(s) 441
Ksp22I TGATCA 1 cut(s) 255
Kzo9I GATC 3 cut(s) 255, 564, 757
LmnI GCTCC 2 cut(s) 290, 334
LpnPI CCDG 6 cut(s) 8, 161, 295, 547, 652, 714
Lsp1109I GCAGC 2 cut(s) 245, 285
LweI GCATC 1 cut(s) 221
MaeI CTAG 3 cut(s) 29, 311, 781
MalI GATC 3 cut(s) 257, 566, 759
MbiI CCGCTC 1 cut(s) 710
MboI GATC 3 cut(s) 255, 564, 757
MboII GAAGA 2 cut(s) 178, 559
MfeI CAATTG 2 cut(s) 609, 665
MflI RGATCY 1 cut(s) 564
MhlI GDGCHC 1 cut(s) 520
MluCI AATT 3 cut(s) 237, 609, 665
MlyI GAGTC 1 cut(s) 710
MnlI CCTC 8 cut(s) 122, 343, 494, 551, 561, 646, 670, 771
MspA1I CMGCKG 1 cut(s) 692
MspI CCGG 2 cut(s) 771, 777
MspR9I CCNGG 1 cut(s) 772
MunI CAATTG 2 cut(s) 609, 665
Mva1269I GAATGC 1 cut(s) 533
MwoI GCNNNNNNNGC 2 cut(s) 282, 291
NciI CCSGG 1 cut(s) 772
NdeII GATC 3 cut(s) 255, 564, 757
NlaIII CATG 4 cut(s) 62, 425, 453, 586
NlaIV GGNNCC 3 cut(s) 439, 518, 775
PctI GAATGC 1 cut(s) 533
PfeI GAWTC 4 cut(s) 278, 496, 547, 680
PkrI GCNGC 3 cut(s) 235, 275, 487
PleI GAGTC 1 cut(s) 709
PpsI GAGTC 1 cut(s) 709
PspN4I GGNNCC 3 cut(s) 439, 518, 775
PspOMI GGGCCC 1 cut(s) 516
PspPI GGNCC 4 cut(s) 516, 517, 572, 774
PsuI RGATCY 1 cut(s) 564
RsaI GTAC 6 cut(s) 27, 186, 264, 306, 353, 439
RsaNI GTAC 6 cut(s) 26, 185, 263, 305, 352, 438
SalI GTCGAC 1 cut(s) 129
SatI GCNGC 3 cut(s) 234, 274, 486
Sau3AI GATC 3 cut(s) 255, 564, 757
Sau96I GGNCC 4 cut(s) 516, 517, 572, 774
ScaI AGTACT 1 cut(s) 353
SchI GAGTC 1 cut(s) 710
ScrFI CCNGG 1 cut(s) 772
SduI GDGCHC 1 cut(s) 520
SetI ASST 8 cut(s) 11, 287, 312, 343, 431, 543, 638, 644
SfaNI GCATC 1 cut(s) 221
SinI GGWCC 1 cut(s) 774
Sse9I AATT 3 cut(s) 237, 609, 665
SsiI CCGC 4 cut(s) 32, 485, 690, 708
SspMI CTAG 3 cut(s) 29, 311, 781
StyD4I CCNGG 1 cut(s) 770
StyI CCWWGG 1 cut(s) 520
TaaI ACNGT 6 cut(s) 17, 79, 103, 298, 442, 725
TaqI TCGA 5 cut(s) 130, 215, 474, 499, 545
TasI AATT 3 cut(s) 237, 609, 665
TatI WGTACW 4 cut(s) 184, 262, 304, 351
TauI GCSGC 1 cut(s) 488
TfiI GAWTC 4 cut(s) 278, 496, 547, 680
TscAI CASTG 2 cut(s) 265, 301
TseI GCWGC 2 cut(s) 233, 273
TspDTI ATGAA 3 cut(s) 61, 460, 647
TspRI CASTG 2 cut(s) 265, 301
VpaK11BI GGWCC 1 cut(s) 774
XmiI GTMKAC 2 cut(s) 130, 404
XspI CTAG 3 cut(s) 29, 311, 781
ZrmI AGTACT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.