Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006939.1

Orthogroup ID

OG0014744

Physical Location & Seq

Genomic Coordinates Forward (+)

19342 .. 20795

Gene Structure 1454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006939.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

atggttagcttagactgtgtgctggtactagcgggtctgtttgtgttgggaatataccatgtttggctattcatcacagttctgcacaatcccataagaactgtcattggcctcaatgcttacactcgtcaacaatgggttttctccctgatgactgaccccttgaagaatggtgttttgattgtacaaactttacgcaacaacataatggcatcgacacttttgtcaacaacagcaattactctttgttctgtgatcagtgtacttgtgagcagcgaatccagctccgatagcactgtatcagtacacctagtttactccgattacgctccctccttaccttcaatcaagtacttgtgcattttgctttgctttcttgttgcatttctctgcaatgtgcagtctactagatactatgcccatgtcagcttcttgggtaccgtcccaacatggaaagacaagacgggtttcatagagtatgttgcggcaactttgaatcgaggatattacttttgggcccttggattgcgagcattctacctctcgattcctctctttctctggatcttcgggccaatacccatgtttgttagttgctgtgtattgtcagttgttctctatttcttggacactacctccagctttgcacaacttattcatacccaattgttcaaggaggaatcaagaaccgctgatgtggagtccaacgctcaatcattgaacaattctggtcgtgagaacttctcccaacttcgtgatcatctactcaccgggtccggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF599

Protein Analysis

260

Amino Acids

29.05

Weight (kDa)

6.98

Isoelectric Point (pI)

33.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014744)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g16800 FvH4_5g16800 FvH4_5g16800 FvH4_5g16800 FvH4_5g16800 FvH4_5g16800 FvH4_5g16800
rosa_chinensis	RchiOBHm_Chr7g0179271
rosa_laevigata	RLG00000005367
rosa_multiflora	Rmu_sc0006939.1_g000007
rosa_roxburghii	Rroxscaffold_3G00274160
rosa_rugosa	Rorug06G0422900
rosa_samantha	Rh7AG022200 Rh7BG022100 Rh7CG023400 Rh7DG022700
rosa_wichuraiana	Rw7G001830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	223
Acc65I	GGTACC	1 cut(s)	437
AccB1I	GGYRCC	1 cut(s)	437
AccI	GTMKAC	1 cut(s)	404
AciI	CCGC	3 cut(s)	32, 485, 690
AclWI	GGATC	1 cut(s)	572
AfaI	GTAC	6 cut(s)	27, 186, 264, 306, 353, 439
AgsI	TTSAA	5 cut(s)	166, 345, 496, 673, 721
AluBI	AGCT	4 cut(s)	9, 285, 429, 642
AluI	AGCT	4 cut(s)	9, 285, 429, 642
AlwI	GGATC	1 cut(s)	572
AoxI	GGCC	3 cut(s)	109, 516, 572
ApaI	GGGCCC	1 cut(s)	520
ApeKI	GCWGC	1 cut(s)	273
Asp718I	GGTACC	1 cut(s)	437
AspS9I	GGNCC	4 cut(s)	516, 517, 572, 774
AsuC2I	CCSGG	1 cut(s)	772
AsuHPI	GGTGA	1 cut(s)	760
AvaII	GGWCC	1 cut(s)	774
BaeGI	GKGCMC	1 cut(s)	520
BanI	GGYRCC	1 cut(s)	437
BanII	GRGCYC	1 cut(s)	520
BbvI	GCAGC	1 cut(s)	285
BclI	TGATCA	2 cut(s)	255, 757
BcnI	CCSGG	1 cut(s)	772
BfaI	CTAG	4 cut(s)	29, 311, 408, 781
BisI	GCNGC	2 cut(s)	274, 486
BlsI	GCNGC	2 cut(s)	275, 487
BmcAI	AGTACT	1 cut(s)	353
Bme1390I	CCNGG	1 cut(s)	772
Bme18I	GGWCC	1 cut(s)	774
BmgT120I	GGNCC	4 cut(s)	516, 517, 572, 774
BmiI	GGNNCC	3 cut(s)	439, 518, 775
BmrFI	CCNGG	1 cut(s)	772
BmsI	GCATC	1 cut(s)	221
BplI	GAGNNNNNCTC	2 cut(s)	728, 760
BpmI	CTGGAG	1 cut(s)	622
BpuMI	CCSGG	1 cut(s)	772
BsaJI	CCNNGG	1 cut(s)	520
BsaXI	ACNNNNNCTCC	4 cut(s)	317, 347, 620, 650
Bse3DI	GCAATG	1 cut(s)	400
BseDI	CCNNGG	1 cut(s)	520
BseMI	GCAATG	1 cut(s)	400
BseSI	GKGCMC	1 cut(s)	520
BseXI	GCAGC	1 cut(s)	285
BsgI	GTGCAG	2 cut(s)	68, 419
BshFI	GGCC	3 cut(s)	111, 518, 574
BshNI	GGYRCC	1 cut(s)	437
BsiSI	CCGG	2 cut(s)	771, 777
BslFI	GGGAC	1 cut(s)	428
BsmFI	GGGAC	1 cut(s)	428
BsmI	GAATGC	1 cut(s)	533
BsnI	GGCC	3 cut(s)	111, 518, 574
Bsp120I	GGGCCC	1 cut(s)	516
Bsp1286I	GDGCHC	1 cut(s)	520
Bsp1407I	TGTACA	1 cut(s)	184
Bsp143I	GATC	3 cut(s)	255, 564, 757
BspACI	CCGC	3 cut(s)	32, 485, 690
BspANI	GGCC	3 cut(s)	111, 518, 574
BspLI	GGNNCC	3 cut(s)	439, 518, 775
BspPI	GGATC	1 cut(s)	572
BspT107I	GGYRCC	1 cut(s)	437
BsrDI	GCAATG	1 cut(s)	400
BsrGI	TGTACA	1 cut(s)	184
BssECI	CCNNGG	1 cut(s)	520
BssMI	GATC	3 cut(s)	255, 564, 757
BssT1I	CCWWGG	1 cut(s)	520
Bst4CI	ACNGT	5 cut(s)	17, 79, 103, 298, 442
BstAUI	TGTACA	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	531
BstDEI	CTNAG	1 cut(s)	10
BstKTI	GATC	3 cut(s)	258, 567, 760
BstMBI	GATC	3 cut(s)	255, 564, 757
BstMWI	GCNNNNNNNGC	2 cut(s)	282, 291
BstSCI	CCNGG	1 cut(s)	770
BstSLI	GKGCMC	1 cut(s)	520
BstV1I	GCAGC	1 cut(s)	285
BstX2I	RGATCY	1 cut(s)	564
BstYI	RGATCY	1 cut(s)	564
BsuRI	GGCC	3 cut(s)	111, 518, 574
BtsIMutI	CAGTG	2 cut(s)	265, 294
Cac8I	GCNNGC	1 cut(s)	531
Cfr13I	GGNCC	4 cut(s)	516, 517, 572, 774
Csp6I	GTAC	6 cut(s)	26, 185, 263, 305, 352, 438
CviAII	CATG	4 cut(s)	59, 422, 450, 583
CviJI	RGCY	9 cut(s)	9, 67, 111, 285, 429, 518, 574, 642, 780
CviKI_1	RGCY	9 cut(s)	9, 67, 111, 285, 429, 518, 574, 642, 780
CviQI	GTAC	6 cut(s)	26, 185, 263, 305, 352, 438
DdeI	CTNAG	1 cut(s)	10
DpnI	GATC	3 cut(s)	257, 566, 759
DpnII	GATC	3 cut(s)	255, 564, 757
DrdI	GACNNNNNNGTC	1 cut(s)	223
DseDI	GACNNNNNNGTC	1 cut(s)	223
Eco130I	CCWWGG	1 cut(s)	520
Eco24I	GRGCYC	1 cut(s)	520
Eco47I	GGWCC	1 cut(s)	774
EcoO109I	RGGNCCY	1 cut(s)	517
EcoT14I	CCWWGG	1 cut(s)	520
EcoT38I	GRGCYC	1 cut(s)	520
ErhI	CCWWGG	1 cut(s)	520
FaeI	CATG	4 cut(s)	62, 425, 453, 586
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	4 cut(s)	58, 421, 449, 582
FauI	CCCGC	1 cut(s)	25
FbaI	TGATCA	2 cut(s)	255, 757
FblI	GTMKAC	1 cut(s)	404
Fnu4HI	GCNGC	2 cut(s)	274, 486
FriOI	GRGCYC	1 cut(s)	520
Fsp4HI	GCNGC	2 cut(s)	274, 486
FspBI	CTAG	4 cut(s)	29, 311, 408, 781
GluI	GCNGC	2 cut(s)	274, 486
GsuI	CTGGAG	1 cut(s)	622
HaeIII	GGCC	3 cut(s)	111, 518, 574
HapII	CCGG	2 cut(s)	771, 777
Hin1II	CATG	4 cut(s)	62, 425, 453, 586
HincII	GTYRAC	2 cut(s)	131, 228
HindII	GTYRAC	2 cut(s)	131, 228
HinfI	GANTC	5 cut(s)	278, 496, 547, 680, 701
HpaII	CCGG	2 cut(s)	771, 777
HphI	GGTGA	1 cut(s)	760
Hpy166II	GTNNAC	6 cut(s)	131, 228, 263, 307, 316, 405
Hpy188I	TCNGA	2 cut(s)	289, 322
Hpy188III	TCNNGA	5 cut(s)	544, 562, 684, 734, 755
Hpy8I	GTNNAC	6 cut(s)	131, 228, 263, 307, 316, 405
HpyAV	CCTTC	1 cut(s)	351
HpyCH4III	ACNGT	5 cut(s)	17, 79, 103, 298, 442
HpyCH4V	TGCA	6 cut(s)	85, 360, 383, 393, 400, 647
HpyF10VI	GCNNNNNNNGC	2 cut(s)	282, 291
HpyF3I	CTNAG	1 cut(s)	10
Hsp92II	CATG	4 cut(s)	62, 425, 453, 586
KpnI	GGTACC	1 cut(s)	441
Ksp22I	TGATCA	2 cut(s)	255, 757
Kzo9I	GATC	3 cut(s)	255, 564, 757
LmnI	GCTCC	2 cut(s)	290, 334
LpnPI	CCDG	6 cut(s)	8, 161, 295, 547, 652, 714
Lsp1109I	GCAGC	1 cut(s)	285
LweI	GCATC	1 cut(s)	221
MaeI	CTAG	4 cut(s)	29, 311, 408, 781
MalI	GATC	3 cut(s)	257, 566, 759
MboI	GATC	3 cut(s)	255, 564, 757
MboII	GAAGA	2 cut(s)	178, 559
MfeI	CAATTG	1 cut(s)	665
MflI	RGATCY	1 cut(s)	564
MhlI	GDGCHC	1 cut(s)	520
MluCI	AATT	3 cut(s)	237, 665, 724
MlyI	GAGTC	1 cut(s)	710
MmeI	TCCRAC	1 cut(s)	729
MnlI	CCTC	7 cut(s)	122, 343, 494, 551, 561, 646, 670
MspA1I	CMGCKG	1 cut(s)	692
MspI	CCGG	2 cut(s)	771, 777
MspR9I	CCNGG	1 cut(s)	772
MunI	CAATTG	1 cut(s)	665
Mva1269I	GAATGC	1 cut(s)	533
MwoI	GCNNNNNNNGC	2 cut(s)	282, 291
NciI	CCSGG	1 cut(s)	772
NdeII	GATC	3 cut(s)	255, 564, 757
NlaIII	CATG	4 cut(s)	62, 425, 453, 586
NlaIV	GGNNCC	3 cut(s)	439, 518, 775
PctI	GAATGC	1 cut(s)	533
PfeI	GAWTC	4 cut(s)	278, 496, 547, 680
PkrI	GCNGC	2 cut(s)	275, 487
PleI	GAGTC	1 cut(s)	709
PpsI	GAGTC	1 cut(s)	709
PspN4I	GGNNCC	3 cut(s)	439, 518, 775
PspOMI	GGGCCC	1 cut(s)	516
PspPI	GGNCC	4 cut(s)	516, 517, 572, 774
PsuI	RGATCY	1 cut(s)	564
RsaI	GTAC	6 cut(s)	27, 186, 264, 306, 353, 439
RsaNI	GTAC	6 cut(s)	26, 185, 263, 305, 352, 438
SatI	GCNGC	2 cut(s)	274, 486
Sau3AI	GATC	3 cut(s)	255, 564, 757
Sau96I	GGNCC	4 cut(s)	516, 517, 572, 774
ScaI	AGTACT	1 cut(s)	353
SchI	GAGTC	1 cut(s)	710
ScrFI	CCNGG	1 cut(s)	772
SduI	GDGCHC	1 cut(s)	520
SetI	ASST	8 cut(s)	11, 287, 312, 343, 431, 543, 638, 644
SfaNI	GCATC	1 cut(s)	221
SinI	GGWCC	1 cut(s)	774
Sse9I	AATT	3 cut(s)	237, 665, 724
SsiI	CCGC	3 cut(s)	32, 485, 690
SspMI	CTAG	4 cut(s)	29, 311, 408, 781
StyD4I	CCNGG	1 cut(s)	770
StyI	CCWWGG	1 cut(s)	520
TaaI	ACNGT	5 cut(s)	17, 79, 103, 298, 442
TaqI	TCGA	3 cut(s)	215, 499, 545
TasI	AATT	3 cut(s)	237, 665, 724
TatI	WGTACW	4 cut(s)	184, 262, 304, 351
TauI	GCSGC	1 cut(s)	488
TfiI	GAWTC	4 cut(s)	278, 496, 547, 680
TscAI	CASTG	2 cut(s)	265, 301
TseI	GCWGC	1 cut(s)	273
TspDTI	ATGAA	3 cut(s)	61, 460, 647
TspRI	CASTG	2 cut(s)	265, 301
VpaK11BI	GGWCC	1 cut(s)	774
XmiI	GTMKAC	1 cut(s)	404
XspI	CTAG	4 cut(s)	29, 311, 408, 781
ZrmI	AGTACT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.