RLG00000005916

Leucine-rich repeats, typical (most populated) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0022876
Physical Location & Seq
Forward (+)
2788053 .. 2789269
1217 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005916

Sequence Viewer

Length: 885 bp
ATGTGCTTACTAGAGTTGGAATGGAGCCTCTGCTTTTTGTCAGTTCCTTTCAAATGCAAATCATGGTACACTACAAGTCTCAATCCCTTGAGCTTTCAAAATCTCTTATTTCTAGATTTTATGCCTTCTCCTTTGTTCACAGTTGCCAATAAGATTGAGGAACCTCTTCCTCGGAGTTTCGGTCCCTTTTATGATAAGTTCATAGACCAATGTGGAATTGATAAAACTCGTTTCTCGATCACTGCGTTTGTGAAATTTGCAGTTAATCGTAGCAATGGACAAGCTACTCAACTTAAGCTACCGGAATTCTGTACCCAAGAAGGATTGATGTTTGTTTCGGATGCATGCCCTTTCCTAAAAAATGCATGGTTGCCCGATGATTTGGTAATTTTCAACACTTCTCACGTTATTCCACAGTTGATTGGGAAGTGGAAATTCTTAGAGAGCTTGGTTTTGGGATTTGGGATGTTGGACATCATGGGCCAGTATGAAATGGATGGTAAGCCTGATTTTTTGAGTGGACATCTCGAGGAGTTATTATTAACATTGAAAAATTTCGTCTGCCTTGAGGTTTTGGATGAAATTGTAGTGCAAATTGGCGCTCACTGCAAGCGCTTTACGGATTTAACGGTTTATCATACTAGTCTTTGTGAAGTTGAGGCATCGACGATTGTGAAGTTGCTGCCCAATCTTAAGAAGTTGTCATTGAATCATTGCCGCATTGATCAGGACAGTGTTGTTAGTTTACTGAGGAGGTGCAAAGAGCTTGCGCTTTTCAATGCCAGCCAATTGAAGGCTTTGAACAGAGTGATGAAGAAATATCAAAGCTTGGTTCTCAGAGTTTTAACTTTTCGTGCCAGGGTTGTGTCGGCGGTAATTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 ubiquitin

Protein Analysis

295

Amino Acids

33.6

Weight (kDa)

7.96

Isoelectric Point (pI)

34.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022876)

Species Orthologous Gene IDs
rosa_laevigata RLG00000005916
rosa_multiflora Rmu_sc0001118.1_g000020
rosa_samantha Rh4CG430300 Rh4DG411400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 718, 872
AcsI RAATTY 4 cut(s) 254, 305, 434, 553
AfaI GTAC 2 cut(s) 68, 313
AfeI AGCGCT 1 cut(s) 614
AfiI CCNNNNNNNGG 1 cut(s) 793
AflII CTTAAG 2 cut(s) 293, 692
AgsI TTSAA 8 cut(s) 52, 98, 394, 550, 709, 778, 793, 802
AhlI ACTAGT 1 cut(s) 641
AjnI CCWGG 1 cut(s) 857
AluBI AGCT 6 cut(s) 93, 284, 298, 447, 766, 828
AluI AGCT 6 cut(s) 93, 284, 298, 447, 766, 828
Alw26I GTCTC 1 cut(s) 83
Ama87I CYCGRG 1 cut(s) 527
Aor51HI AGCGCT 1 cut(s) 614
AoxI GGCC 1 cut(s) 481
ApeKI GCWGC 1 cut(s) 682
ApoI RAATTY 4 cut(s) 254, 305, 434, 553
Asp700I GAANNNNTTC 2 cut(s) 165, 554
AspLEI GCGC 3 cut(s) 602, 615, 772
AspS9I GGNCC 2 cut(s) 182, 481
AvaI CYCGRG 1 cut(s) 527
AvaII GGWCC 1 cut(s) 182
BbvI GCAGC 1 cut(s) 669
BccI CCATC 1 cut(s) 491
BciT130I CCWGG 1 cut(s) 859
BclI TGATCA 1 cut(s) 724
BcoDI GTCTC 1 cut(s) 83
BcuI ACTAGT 1 cut(s) 641
BfaI CTAG 3 cut(s) 11, 113, 642
BfoI RGCGCY 2 cut(s) 603, 616
BfrI CTTAAG 2 cut(s) 293, 692
BisI GCNGC 2 cut(s) 683, 718
BlsI GCNGC 2 cut(s) 684, 719
Bme1390I CCNGG 1 cut(s) 859
Bme18I GGWCC 1 cut(s) 182
BmeT110I CYCGRG 1 cut(s) 527
BmgT120I GGNCC 2 cut(s) 182, 481
BmiI GGNNCC 3 cut(s) 26, 162, 184
BmrFI CCNGG 1 cut(s) 859
BmsI GCATC 2 cut(s) 331, 671
BpuEI CTTGAG 2 cut(s) 109, 587
BsaJI CCNNGG 2 cut(s) 170, 858
BsaWI WCCGGW 1 cut(s) 301
BsaXI ACNNNNNCTCC 2 cut(s) 166, 196
Bsc4I CCNNNNNNNGG 1 cut(s) 793
Bse1I ACTGG 1 cut(s) 484
Bse3DI GCAATG 2 cut(s) 280, 712
BseBI CCWGG 1 cut(s) 859
BseDI CCNNGG 2 cut(s) 170, 858
BseGI GGATG 4 cut(s) 346, 471, 502, 583
BseLI CCNNNNNNNGG 1 cut(s) 793
BseMI GCAATG 2 cut(s) 280, 712
BseMII CTCAG 2 cut(s) 740, 850
BseNI ACTGG 1 cut(s) 484
BseRI GAGGAG 2 cut(s) 545, 766
BseXI GCAGC 1 cut(s) 669
BshFI GGCC 1 cut(s) 483
BsiHKCI CYCGRG 1 cut(s) 527
BsiSI CCGG 1 cut(s) 302
BslFI GGGAC 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 793
BsmAI GTCTC 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 168
BsnI GGCC 1 cut(s) 483
BsoBI CYCGRG 1 cut(s) 527
Bsp143I GATC 2 cut(s) 237, 724
BspACI CCGC 2 cut(s) 718, 872
BspANI GGCC 1 cut(s) 483
BspCNI CTCAG 2 cut(s) 741, 849
BspLI GGNNCC 3 cut(s) 26, 162, 184
BspTI CTTAAG 2 cut(s) 293, 692
BsrDI GCAATG 2 cut(s) 280, 712
BsrI ACTGG 1 cut(s) 484
BssECI CCNNGG 2 cut(s) 170, 858
BssMI GATC 2 cut(s) 237, 724
Bst2UI CCWGG 1 cut(s) 859
Bst4CI ACNGT 4 cut(s) 142, 417, 631, 734
Bst6I CTCTTC 1 cut(s) 171
BstAFI CTTAAG 2 cut(s) 293, 692
BstC8I GCNNGC 4 cut(s) 346, 611, 768, 784
BstDEI CTNAG 3 cut(s) 439, 749, 836
BstF5I GGATG 4 cut(s) 346, 471, 502, 583
BstH2I RGCGCY 2 cut(s) 603, 616
BstHHI GCGC 3 cut(s) 602, 615, 772
BstKTI GATC 2 cut(s) 240, 727
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 2 cut(s) 237, 724
BstMWI GCNNNNNNNGC 1 cut(s) 606
BstNI CCWGG 1 cut(s) 859
BstNSI RCATGY 1 cut(s) 348
BstSCI CCNGG 1 cut(s) 857
BstV1I GCAGC 1 cut(s) 669
BsuRI GGCC 1 cut(s) 483
BtsCI GGATG 4 cut(s) 346, 471, 502, 583
BtsI GCAGTG 2 cut(s) 240, 604
BtsIMutI CAGTG 3 cut(s) 240, 604, 739
Cac8I GCNNGC 4 cut(s) 346, 611, 768, 784
CfoI GCGC 3 cut(s) 602, 615, 772
Cfr13I GGNCC 2 cut(s) 182, 481
Csp6I GTAC 2 cut(s) 67, 312
CviAII CATG 4 cut(s) 63, 345, 366, 478
CviQI GTAC 2 cut(s) 67, 312
DdeI CTNAG 3 cut(s) 439, 749, 836
DpnI GATC 2 cut(s) 239, 726
DpnII GATC 2 cut(s) 237, 724
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco47I GGWCC 1 cut(s) 182
Eco47III AGCGCT 1 cut(s) 614
Eco88I CYCGRG 1 cut(s) 527
EcoRI GAATTC 1 cut(s) 305
EcoRII CCWGG 1 cut(s) 857
EcoT22I ATGCAT 2 cut(s) 346, 367
FaeI CATG 4 cut(s) 66, 348, 369, 481
FaiI YATR 9 cut(s) 64, 122, 192, 203, 346, 367, 479, 489, 639
FaqI GGGAC 1 cut(s) 168
FatI CATG 4 cut(s) 62, 344, 365, 477
FbaI TGATCA 1 cut(s) 724
Fnu4HI GCNGC 2 cut(s) 683, 718
FokI GGATG 4 cut(s) 353, 478, 509, 590
Fsp4HI GCNGC 2 cut(s) 683, 718
FspBI CTAG 3 cut(s) 11, 113, 642
GlaI GCGC 3 cut(s) 601, 614, 771
GluI GCNGC 2 cut(s) 683, 718
HaeII RGCGCY 2 cut(s) 603, 616
HaeIII GGCC 1 cut(s) 483
HapII CCGG 1 cut(s) 302
HhaI GCGC 3 cut(s) 602, 615, 772
Hin1II CATG 4 cut(s) 66, 348, 369, 481
Hin6I GCGC 3 cut(s) 600, 613, 770
HinP1I GCGC 3 cut(s) 600, 613, 770
HindIII AAGCTT 1 cut(s) 826
HinfI GANTC 1 cut(s) 709
HpaII CCGG 1 cut(s) 302
Hpy166II GTNNAC 4 cut(s) 69, 138, 521, 746
Hpy188I TCNGA 3 cut(s) 174, 340, 839
Hpy188III TCNNGA 4 cut(s) 113, 235, 527, 728
Hpy8I GTNNAC 4 cut(s) 69, 138, 521, 746
Hpy99I CGWCG 1 cut(s) 670
HpyAV CCTTC 3 cut(s) 135, 314, 787
HpyCH4III ACNGT 4 cut(s) 142, 417, 631, 734
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 7 cut(s) 57, 260, 344, 365, 592, 609, 759
HpyF10VI GCNNNNNNNGC 1 cut(s) 606
HpyF3I CTNAG 3 cut(s) 439, 749, 836
HpySE526I ACGT 1 cut(s) 405
Hsp92II CATG 4 cut(s) 66, 348, 369, 481
HspAI GCGC 3 cut(s) 600, 613, 770
Ksp22I TGATCA 1 cut(s) 724
Kzo9I GATC 2 cut(s) 237, 724
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 7 cut(s) 315, 497, 519, 713, 796, 844, 871
Lsp1109I GCAGC 1 cut(s) 669
LweI GCATC 2 cut(s) 331, 671
MaeI CTAG 3 cut(s) 11, 113, 642
MaeII ACGT 1 cut(s) 405
MalI GATC 2 cut(s) 239, 726
MboI GATC 2 cut(s) 237, 724
MboII GAAGA 2 cut(s) 158, 826
MfeI CAATTG 1 cut(s) 788
MmeI TCCRAC 1 cut(s) 450
MnlI CCTC 9 cut(s) 38, 151, 174, 180, 523, 562, 652, 744, 747
Mph1103I ATGCAT 2 cut(s) 346, 367
MroXI GAANNNNTTC 2 cut(s) 165, 554
MseI TTAA 7 cut(s) 264, 294, 542, 626, 693, 845, 883
MspCI CTTAAG 2 cut(s) 293, 692
MspI CCGG 1 cut(s) 302
MspR9I CCNGG 1 cut(s) 859
MunI CAATTG 1 cut(s) 788
MvaI CCWGG 1 cut(s) 859
MwoI GCNNNNNNNGC 1 cut(s) 606
NdeII GATC 2 cut(s) 237, 724
NlaIII CATG 4 cut(s) 66, 348, 369, 481
NlaIV GGNNCC 3 cut(s) 26, 162, 184
NsiI ATGCAT 2 cut(s) 346, 367
NspI RCATGY 1 cut(s) 348
PaeI GCATGC 1 cut(s) 348
PaeR7I CTCGAG 1 cut(s) 527
PcsI WCGNNNNNNNCGW 1 cut(s) 242
PdmI GAANNNNTTC 2 cut(s) 165, 554
PfeI GAWTC 1 cut(s) 709
PkrI GCNGC 2 cut(s) 684, 719
Psp6I CCWGG 1 cut(s) 857
PspGI CCWGG 1 cut(s) 857
PspN4I GGNNCC 3 cut(s) 26, 162, 184
PspPI GGNCC 2 cut(s) 182, 481
RsaI GTAC 2 cut(s) 68, 313
RsaNI GTAC 2 cut(s) 67, 312
SaqAI TTAA 7 cut(s) 264, 294, 542, 626, 693, 845, 883
SatI GCNGC 2 cut(s) 683, 718
Sau3AI GATC 2 cut(s) 237, 724
Sau96I GGNCC 2 cut(s) 182, 481
ScrFI CCNGG 1 cut(s) 859
SfaNI GCATC 2 cut(s) 331, 671
Sfr274I CTCGAG 1 cut(s) 527
SinI GGWCC 1 cut(s) 182
SlaI CTCGAG 1 cut(s) 527
SmlI CTYRAG 5 cut(s) 88, 293, 527, 566, 692
SmoI CTYRAG 5 cut(s) 88, 293, 527, 566, 692
SpeI ACTAGT 1 cut(s) 641
SphI GCATGC 1 cut(s) 348
SsiI CCGC 2 cut(s) 718, 872
SspMI CTAG 3 cut(s) 11, 113, 642
StyD4I CCNGG 1 cut(s) 857
TaaI ACNGT 4 cut(s) 142, 417, 631, 734
TaiI ACGT 1 cut(s) 408
TaqI TCGA 3 cut(s) 236, 528, 665
TaqII GACCGA 1 cut(s) 170
TauI GCSGC 1 cut(s) 720
TfiI GAWTC 1 cut(s) 709
Tru1I TTAA 7 cut(s) 264, 294, 542, 626, 693, 845, 883
Tru9I TTAA 7 cut(s) 264, 294, 542, 626, 693, 845, 883
TscAI CASTG 3 cut(s) 247, 611, 739
TseI GCWGC 1 cut(s) 682
TspDTI ATGAA 4 cut(s) 190, 504, 594, 827
TspGWI ACGGA 1 cut(s) 635
TspRI CASTG 3 cut(s) 247, 611, 739
Vha464I CTTAAG 2 cut(s) 293, 692
VpaK11BI GGWCC 1 cut(s) 182
XapI RAATTY 4 cut(s) 254, 305, 434, 553
XbaI TCTAGA 1 cut(s) 112
XceI RCATGY 1 cut(s) 348
XhoI CTCGAG 1 cut(s) 527
XmnI GAANNNNTTC 2 cut(s) 165, 554
XspI CTAG 3 cut(s) 11, 113, 642
Zsp2I ATGCAT 2 cut(s) 346, 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.