Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0020622

Physical Location & Seq

Genomic Coordinates Forward (+)

6483071 .. 6484030

Gene Structure 960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006356

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGTCGTCGACGCTGCTGGAGGTGACGCGTGGCGCTCAAGAGGAGGTGGAGCGGTTGGAGCGTCTGATAGTGAAGGACTTTCAGAACGAGCCGAGGAGCAGCAAGGAACGCTTGGCTCAGAGCCACGGCCGTGTCCACCTCATGATCGACACCATCATCTCCACCACAGAAAGATTCATTGAGATCTATGAGAATAACGATAATGAGAGGAAGGACGAGATTGCGGCTCTTGGAGGCCAAACTGCCACCGACACCAATGCATTCGATGATAGATTGATAGAAATGCCGAGGAGCCTCAAGTTGAGTTCATTGGAGAGGAAGCTAAAGGAGGCATTGGCTTCATTAGGACTGAAGATAGGGGGTACCGTTCAGCAACGTGCAGAGAGGCTTCTACTTACAAAGGATGAACCTCTGGAAAAGTTGGACAAGAAGCATTTTGCCAAAGGGTCACGTGGTTCAGCACAGAACGGGGCTGCTGTAGCTCCTCAGCAAAAATTGCAGCAAAACGTGAGGATGAAGAGACACAGGCTGATGATACTGAAAGCTTACTGGCTGTATAAGCTTCATGGTCTTGGTCAGGAATTCAAGTGTGAGATACGTGGGAATCATAGTTACCGGGGGTTAGAGCTTTTGAGCGGCATTTTAAGGAATGGTGCCGGCCATCAGCATGGAATGCCTTGCCTTGGTATACCAAACACCAACAACTTCAACGACATCACATCAATTGAGAAGCACAAGAATTGTGGAAGAGGATACAAGCAAGGCAAGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0005829 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043900 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045694 GO:0046483 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0065003 GO:0065007 GO:0070013 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF3449 SF3A3 SF3a60_bindingd Telomere_Sde2_2

Protein Analysis

258

Amino Acids

29.04

Weight (kDa)

9.53

Isoelectric Point (pI)

30.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDE2_2C	PF13297	107 - 148	3.1e-16	Replication stress response SDE2 C-terminal
SF3a60_Prp9_C	PF11931	182 - 247	6.5e-17	SF3a60/Prp9 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020622)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000006356
rosa_multiflora	Rmu_sc0002327.1_g000010 Rmu_sc0004398.1_g000001
rosa_samantha	Rh4AG361500 Rh4BG372700 Rh4CG386800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	362
AccB1I	GGYRCC	2 cut(s)	362, 653
AccBSI	CCGCTC	2 cut(s)	52, 636
AccI	GTMKAC	2 cut(s)	8, 688
AccII	CGCG	1 cut(s)	28
AciI	CCGC	3 cut(s)	52, 224, 636
AcoI	YGGCCR	2 cut(s)	127, 658
AcsI	RAATTY	1 cut(s)	581
AcuI	CTGAAG	1 cut(s)	371
AcvI	CACGTG	1 cut(s)	452
AfaI	GTAC	1 cut(s)	364
AfiI	CCNNNNNNNGG	1 cut(s)	683
AflIII	ACRYGT	1 cut(s)	26
AgsI	TTSAA	2 cut(s)	586, 709
AleI	CACNNNNGTG	1 cut(s)	129
AluBI	AGCT	5 cut(s)	322, 482, 545, 562, 628
AluI	AGCT	5 cut(s)	322, 482, 545, 562, 628
Alw26I	GTCTC	1 cut(s)	514
AoxI	GGCC	3 cut(s)	127, 235, 658
ApeKI	GCWGC	4 cut(s)	13, 99, 473, 499
ApoI	RAATTY	1 cut(s)	581
Asp718I	GGTACC	1 cut(s)	362
AspLEI	GCGC	1 cut(s)	35
AsuC2I	CCSGG	1 cut(s)	617
AsuHPI	GGTGA	1 cut(s)	34
BanI	GGYRCC	2 cut(s)	362, 653
BbrPI	CACGTG	1 cut(s)	452
BbvCI	CCTCAGC	1 cut(s)	486
BbvI	GCAGC	3 cut(s)	111, 460, 511
BccI	CCATC	2 cut(s)	161, 669
BceAI	ACGGC	2 cut(s)	114, 142
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BciVI	GTATCC	1 cut(s)	746
BcnI	CCSGG	1 cut(s)	617
BcoDI	GTCTC	1 cut(s)	514
BfmI	CTRYAG	1 cut(s)	477
BfoI	RGCGCY	1 cut(s)	36
BfuI	GTATCC	1 cut(s)	746
BglII	AGATCT	1 cut(s)	183
BisI	GCNGC	6 cut(s)	14, 100, 225, 474, 500, 637
BlsI	GCNGC	6 cut(s)	15, 101, 226, 475, 501, 638
Bme1390I	CCNGG	1 cut(s)	617
BmiI	GGNNCC	3 cut(s)	293, 364, 655
BmrFI	CCNGG	1 cut(s)	617
BpmI	CTGGAG	1 cut(s)	38
Bpu10I	CCTNAGC	1 cut(s)	486
BpuEI	CTTGAG	2 cut(s)	21, 281
BpuMI	CCSGG	1 cut(s)	617
BsaAI	YACGTR	2 cut(s)	452, 599
BsaJI	CCNNGG	5 cut(s)	92, 124, 287, 616, 682
Bsc4I	CCNNNNNNNGG	1 cut(s)	683
Bse118I	RCCGGY	1 cut(s)	656
Bse1I	ACTGG	1 cut(s)	554
BseDI	CCNNGG	5 cut(s)	92, 124, 287, 616, 682
BseGI	GGATG	2 cut(s)	409, 519
BseLI	CCNNNNNNNGG	1 cut(s)	683
BseMII	CTCAG	2 cut(s)	131, 500
BseNI	ACTGG	1 cut(s)	554
BseRI	GAGGAG	4 cut(s)	56, 109, 304, 474
BseX3I	CGGCCG	1 cut(s)	127
BseXI	GCAGC	3 cut(s)	111, 460, 511
BsgI	GTGCAG	1 cut(s)	399
Bsh1236I	CGCG	1 cut(s)	28
Bsh1285I	CGRYCG	1 cut(s)	130
BshFI	GGCC	3 cut(s)	129, 237, 660
BshNI	GGYRCC	2 cut(s)	362, 653
BsiEI	CGRYCG	1 cut(s)	130
BsiSI	CCGG	2 cut(s)	616, 657
BslI	CCNNNNNNNGG	1 cut(s)	683
BsmAI	GTCTC	1 cut(s)	514
BsmI	GAATGC	2 cut(s)	260, 678
BsnI	GGCC	3 cut(s)	129, 237, 660
Bsp143I	GATC	2 cut(s)	144, 183
BspACI	CCGC	3 cut(s)	52, 224, 636
BspANI	GGCC	3 cut(s)	129, 237, 660
BspCNI	CTCAG	2 cut(s)	130, 499
BspFNI	CGCG	1 cut(s)	28
BspHI	TCATGA	1 cut(s)	141
BspLI	GGNNCC	3 cut(s)	293, 364, 655
BspT107I	GGYRCC	2 cut(s)	362, 653
BsrBI	CCGCTC	2 cut(s)	52, 636
BsrFI	RCCGGY	1 cut(s)	656
BsrI	ACTGG	1 cut(s)	554
BssAI	RCCGGY	1 cut(s)	656
BssECI	CCNNGG	5 cut(s)	92, 124, 287, 616, 682
BssMI	GATC	2 cut(s)	144, 183
BssNAI	GTATAC	1 cut(s)	689
BssT1I	CCWWGG	1 cut(s)	682
Bst1107I	GTATAC	1 cut(s)	689
Bst4CI	ACNGT	1 cut(s)	367
Bst6I	CTCTTC	2 cut(s)	512, 742
BstAPI	GCANNNNNTGC	2 cut(s)	496, 673
BstBAI	YACGTR	2 cut(s)	452, 599
BstC8I	GCNNGC	1 cut(s)	658
BstDEI	CTNAG	2 cut(s)	117, 486
BstDSI	CCRYGG	1 cut(s)	124
BstF5I	GGATG	2 cut(s)	409, 519
BstFNI	CGCG	1 cut(s)	28
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	2 cut(s)	147, 186
BstMAI	GTCTC	1 cut(s)	514
BstMBI	GATC	2 cut(s)	144, 183
BstMCI	CGRYCG	1 cut(s)	130
BstMWI	GCNNNNNNNGC	6 cut(s)	58, 108, 479, 496, 559, 673
BstSCI	CCNGG	1 cut(s)	615
BstSFI	CTRYAG	1 cut(s)	477
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	3 cut(s)	111, 460, 511
BstX2I	RGATCY	1 cut(s)	183
BstXI	CCANNNNNNTGG	1 cut(s)	668
BstYI	RGATCY	1 cut(s)	183
BstZ17I	GTATAC	1 cut(s)	689
BstZI	CGGCCG	1 cut(s)	127
BsuI	GTATCC	1 cut(s)	746
BsuRI	GGCC	3 cut(s)	129, 237, 660
BtgI	CCRYGG	1 cut(s)	124
BtsCI	GGATG	2 cut(s)	409, 519
Cac8I	GCNNGC	1 cut(s)	658
CciI	TCATGA	1 cut(s)	141
CfoI	GCGC	1 cut(s)	35
Cfr10I	RCCGGY	1 cut(s)	656
CseI	GACGC	3 cut(s)	19, 34, 50
Csp6I	GTAC	1 cut(s)	363
CspCI	CAANNNNNGTGG	2 cut(s)	724, 759
CviAII	CATG	3 cut(s)	142, 566, 668
CviQI	GTAC	1 cut(s)	363
DdeI	CTNAG	2 cut(s)	117, 486
DpnI	GATC	2 cut(s)	146, 185
DpnII	GATC	2 cut(s)	144, 183
EaeI	YGGCCR	2 cut(s)	127, 658
EagI	CGGCCG	1 cut(s)	127
Eam1104I	CTCTTC	2 cut(s)	512, 742
EarI	CTCTTC	2 cut(s)	512, 742
EclXI	CGGCCG	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	682
Eco52I	CGGCCG	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	371
Eco72I	CACGTG	1 cut(s)	452
EcoRI	GAATTC	1 cut(s)	581
EcoT14I	CCWWGG	1 cut(s)	682
EcoT22I	ATGCAT	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	682
FaeI	CATG	3 cut(s)	145, 569, 671
FaiI	YATR	7 cut(s)	143, 189, 558, 567, 609, 669, 689
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FatI	CATG	3 cut(s)	141, 565, 667
FblI	GTMKAC	2 cut(s)	8, 688
Fnu4HI	GCNGC	6 cut(s)	14, 100, 225, 474, 500, 637
FokI	GGATG	2 cut(s)	416, 526
Fsp4HI	GCNGC	6 cut(s)	14, 100, 225, 474, 500, 637
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	6 cut(s)	14, 100, 225, 474, 500, 637
GsuI	CTGGAG	1 cut(s)	38
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	3 cut(s)	129, 237, 660
HapII	CCGG	2 cut(s)	616, 657
HgaI	GACGC	3 cut(s)	19, 34, 50
HhaI	GCGC	1 cut(s)	35
Hin1II	CATG	3 cut(s)	145, 569, 671
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HindIII	AAGCTT	2 cut(s)	543, 560
HinfI	GANTC	2 cut(s)	174, 604
HpaII	CCGG	2 cut(s)	616, 657
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	3 cut(s)	9, 136, 689
Hpy188I	TCNGA	3 cut(s)	66, 84, 120
Hpy188III	TCNNGA	4 cut(s)	38, 142, 413, 578
Hpy8I	GTNNAC	3 cut(s)	9, 136, 689
Hpy99I	CGWCG	2 cut(s)	10, 13
HpyAV	CCTTC	2 cut(s)	67, 205
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4IV	ACGT	4 cut(s)	376, 451, 507, 598
HpyCH4V	TGCA	3 cut(s)	260, 380, 499
HpyF10VI	GCNNNNNNNGC	6 cut(s)	58, 108, 479, 496, 559, 673
HpyF3I	CTNAG	2 cut(s)	117, 486
HpySE526I	ACGT	4 cut(s)	376, 451, 507, 598
Hsp92II	CATG	3 cut(s)	145, 569, 671
HspAI	GCGC	1 cut(s)	33
KpnI	GGTACC	1 cut(s)	366
KroI	GCCGGC	1 cut(s)	656
KroNI	GCCGGC	1 cut(s)	658
Kzo9I	GATC	2 cut(s)	144, 183
LmnI	GCTCC	5 cut(s)	49, 58, 96, 291, 487
LpnPI	CCDG	7 cut(s)	2, 398, 511, 535, 563, 629, 670
Lsp1109I	GCAGC	3 cut(s)	111, 460, 511
MaeII	ACGT	4 cut(s)	376, 451, 507, 598
MaeIII	GTNAC	3 cut(s)	22, 447, 611
MalI	GATC	2 cut(s)	146, 185
MbiI	CCGCTC	2 cut(s)	52, 636
MboI	GATC	2 cut(s)	144, 183
MboII	GAAGA	3 cut(s)	364, 529, 759
MfeI	CAATTG	1 cut(s)	723
MflI	RGATCY	1 cut(s)	183
MluCI	AATT	4 cut(s)	494, 581, 723, 739
MluI	ACGCGT	1 cut(s)	26
MmeI	TCCRAC	2 cut(s)	36, 402
Mph1103I	ATGCAT	1 cut(s)	262
MroNI	GCCGGC	1 cut(s)	656
MseI	TTAA	1 cut(s)	644
MslI	CAYNNNNRTG	2 cut(s)	129, 666
MspI	CCGG	2 cut(s)	616, 657
MspR9I	CCNGG	1 cut(s)	617
MunI	CAATTG	1 cut(s)	723
Mva1269I	GAATGC	2 cut(s)	260, 678
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	6 cut(s)	58, 108, 479, 496, 559, 673
NaeI	GCCGGC	1 cut(s)	658
NciI	CCSGG	1 cut(s)	617
NdeII	GATC	2 cut(s)	144, 183
NgoMIV	GCCGGC	1 cut(s)	656
NlaIII	CATG	3 cut(s)	145, 569, 671
NlaIV	GGNNCC	3 cut(s)	293, 364, 655
NmeAIII	GCCGAG	2 cut(s)	117, 312
NmuCI	GTSAC	2 cut(s)	22, 447
NsiI	ATGCAT	1 cut(s)	262
OliI	CACNNNNGTG	1 cut(s)	129
PagI	TCATGA	1 cut(s)	141
PctI	GAATGC	2 cut(s)	260, 678
PdiI	GCCGGC	1 cut(s)	658
PfeI	GAWTC	2 cut(s)	174, 604
PkrI	GCNGC	6 cut(s)	15, 101, 226, 475, 501, 638
PmaCI	CACGTG	1 cut(s)	452
PmlI	CACGTG	1 cut(s)	452
Ppu21I	YACGTR	2 cut(s)	452, 599
PspCI	CACGTG	1 cut(s)	452
PspN4I	GGNNCC	3 cut(s)	293, 364, 655
PsuI	RGATCY	1 cut(s)	183
RsaI	GTAC	1 cut(s)	364
RsaNI	GTAC	1 cut(s)	363
RseI	CAYNNNNRTG	2 cut(s)	129, 666
SalI	GTCGAC	1 cut(s)	7
SaqAI	TTAA	1 cut(s)	644
SatI	GCNGC	6 cut(s)	14, 100, 225, 474, 500, 637
Sau3AI	GATC	2 cut(s)	144, 183
ScrFI	CCNGG	1 cut(s)	617
SfcI	CTRYAG	1 cut(s)	477
SgrDI	CGTCGACG	1 cut(s)	7
SmiMI	CAYNNNNRTG	2 cut(s)	129, 666
SmlI	CTYRAG	2 cut(s)	36, 296
SmoI	CTYRAG	2 cut(s)	36, 296
Sse9I	AATT	4 cut(s)	494, 581, 723, 739
SsiI	CCGC	3 cut(s)	52, 224, 636
StyD4I	CCNGG	1 cut(s)	615
StyI	CCWWGG	1 cut(s)	682
TaaI	ACNGT	1 cut(s)	367
TaiI	ACGT	4 cut(s)	379, 454, 510, 601
TaqI	TCGA	3 cut(s)	8, 147, 264
TasI	AATT	4 cut(s)	494, 581, 723, 739
TauI	GCSGC	2 cut(s)	227, 639
TfiI	GAWTC	2 cut(s)	174, 604
Tru1I	TTAA	1 cut(s)	644
Tru9I	TTAA	1 cut(s)	644
TseFI	GTSAC	2 cut(s)	22, 447
TseI	GCWGC	4 cut(s)	13, 99, 473, 499
Tsp45I	GTSAC	2 cut(s)	22, 447
TspDTI	ATGAA	6 cut(s)	166, 297, 330, 420, 530, 554
XapI	RAATTY	1 cut(s)	581
XmiI	GTMKAC	2 cut(s)	8, 688
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.