Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004398.1

Orthogroup ID

OG0020622

Physical Location & Seq

Genomic Coordinates Forward (+)

522 .. 809

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004398.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

atgaagaaattgcagcaaaacgtgaggatgaagagacacaggctgatgatactgaaagcttactggctgtataagcttcatggtcttggtcaggaattccagtctgagatacgtgggaatcagagttaccggggattagagcttttgagcggcattttaaggaatggcgccggccatcagcatggaatgccttgccttggcataccaaacaccaagaacttcaacgacatcacatcaattgagaagcacaagaattgtggaagaggatacaagcaaggcaaggggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0005829 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043900 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045694 GO:0046483 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0065003 GO:0065007 GO:0070013 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF3449 SF3A3 SF3a60_bindingd Telomere_Sde2_2

Protein Analysis

95

Amino Acids

10.92

Weight (kDa)

10.25

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020622)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000006356
rosa_multiflora	Rmu_sc0002327.1_g000010 Rmu_sc0004398.1_g000001
rosa_samantha	Rh4AG361500 Rh4BG372700 Rh4CG386800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	167
AccBSI	CCGCTC	1 cut(s)	150
AciI	CCGC	1 cut(s)	150
AcoI	YGGCCR	1 cut(s)	172
AcsI	RAATTY	1 cut(s)	95
AcyI	GRCGYC	1 cut(s)	168
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgsI	TTSAA	1 cut(s)	223
AluBI	AGCT	3 cut(s)	59, 76, 142
AluI	AGCT	3 cut(s)	59, 76, 142
Alw26I	GTCTC	1 cut(s)	28
AoxI	GGCC	1 cut(s)	172
ApeKI	GCWGC	1 cut(s)	13
ApoI	RAATTY	1 cut(s)	95
AspLEI	GCGC	1 cut(s)	170
AsuC2I	CCSGG	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	1 cut(s)	183
BciVI	GTATCC	1 cut(s)	260
BcnI	CCSGG	1 cut(s)	131
BcoDI	GTCTC	1 cut(s)	28
BfoI	RGCGCY	1 cut(s)	171
BfuI	GTATCC	1 cut(s)	260
BisI	GCNGC	2 cut(s)	14, 151
BlsI	GCNGC	2 cut(s)	15, 152
Bme1390I	CCNGG	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	169
BmrFI	CCNGG	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	131
BsaAI	YACGTR	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	130, 196
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse118I	RCCGGY	1 cut(s)	170
Bse1I	ACTGG	2 cut(s)	68, 100
BseDI	CCNNGG	2 cut(s)	130, 196
BseGI	GGATG	1 cut(s)	33
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	2 cut(s)	68, 100
BseXI	GCAGC	1 cut(s)	25
BshFI	GGCC	1 cut(s)	174
BshNI	GGYRCC	1 cut(s)	167
BsiSI	CCGG	2 cut(s)	130, 171
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmAI	GTCTC	1 cut(s)	28
BsmI	GAATGC	1 cut(s)	192
BsnI	GGCC	1 cut(s)	174
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	1 cut(s)	174
BspCNI	CTCAG	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	169
BspT107I	GGYRCC	1 cut(s)	167
BsrBI	CCGCTC	1 cut(s)	150
BsrFI	RCCGGY	1 cut(s)	170
BsrI	ACTGG	2 cut(s)	68, 100
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	2 cut(s)	130, 196
BssNI	GRCGYC	1 cut(s)	168
BssT1I	CCWWGG	1 cut(s)	196
Bst6I	CTCTTC	2 cut(s)	26, 256
BstACI	GRCGYC	1 cut(s)	168
BstAPI	GCANNNNNTGC	1 cut(s)	187
BstBAI	YACGTR	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	33
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	170
BstMAI	GTCTC	1 cut(s)	28
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 187
BstSCI	CCNGG	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	25
BstXI	CCANNNNNNTGG	1 cut(s)	182
BsuI	GTATCC	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	172
CfoI	GCGC	1 cut(s)	170
Cfr10I	RCCGGY	1 cut(s)	170
CspCI	CAANNNNNGTGG	2 cut(s)	238, 273
CviAII	CATG	2 cut(s)	80, 182
CviJI	RGCY	6 cut(s)	43, 59, 67, 76, 142, 174
CviKI_1	RGCY	6 cut(s)	43, 59, 67, 76, 142, 174
DdeI	CTNAG	1 cut(s)	105
DinI	GGCGCC	1 cut(s)	169
EaeI	YGGCCR	1 cut(s)	172
Eam1104I	CTCTTC	2 cut(s)	26, 256
EarI	CTCTTC	2 cut(s)	26, 256
Eco130I	CCWWGG	1 cut(s)	196
EcoRI	GAATTC	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	196
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	196
FaeI	CATG	2 cut(s)	83, 185
FaiI	YATR	4 cut(s)	72, 81, 183, 203
FatI	CATG	2 cut(s)	79, 181
Fnu4HI	GCNGC	2 cut(s)	14, 151
FokI	GGATG	1 cut(s)	40
Fsp4HI	GCNGC	2 cut(s)	14, 151
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	2 cut(s)	14, 151
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	2 cut(s)	130, 171
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	2 cut(s)	83, 185
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HindIII	AAGCTT	2 cut(s)	57, 74
HinfI	GANTC	1 cut(s)	118
HpaII	CCGG	2 cut(s)	130, 171
Hpy188I	TCNGA	2 cut(s)	106, 123
Hpy188III	TCNNGA	1 cut(s)	92
HpyCH4IV	ACGT	2 cut(s)	21, 112
HpyCH4V	TGCA	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 187
HpyF3I	CTNAG	1 cut(s)	105
HpySE526I	ACGT	2 cut(s)	21, 112
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	83, 185
HspAI	GCGC	1 cut(s)	168
KasI	GGCGCC	1 cut(s)	167
KroI	GCCGGC	1 cut(s)	170
KroNI	GCCGGC	1 cut(s)	172
LpnPI	CCDG	6 cut(s)	25, 49, 77, 113, 143, 184
Lsp1109I	GCAGC	1 cut(s)	25
MaeII	ACGT	2 cut(s)	21, 112
MaeIII	GTNAC	1 cut(s)	125
MbiI	CCGCTC	1 cut(s)	150
MboII	GAAGA	3 cut(s)	16, 43, 273
MfeI	CAATTG	1 cut(s)	237
MluCI	AATT	4 cut(s)	8, 95, 237, 253
Mly113I	GGCGCC	1 cut(s)	168
MnlI	CCTC	2 cut(s)	18, 257
MroNI	GCCGGC	1 cut(s)	170
MseI	TTAA	1 cut(s)	158
MslI	CAYNNNNRTG	1 cut(s)	180
MspI	CCGG	2 cut(s)	130, 171
MspR9I	CCNGG	1 cut(s)	131
MunI	CAATTG	1 cut(s)	237
Mva1269I	GAATGC	1 cut(s)	192
MwoI	GCNNNNNNNGC	2 cut(s)	73, 187
NaeI	GCCGGC	1 cut(s)	172
NarI	GGCGCC	1 cut(s)	168
NciI	CCSGG	1 cut(s)	131
NgoMIV	GCCGGC	1 cut(s)	170
NlaIII	CATG	2 cut(s)	83, 185
NlaIV	GGNNCC	1 cut(s)	169
PctI	GAATGC	1 cut(s)	192
PdiI	GCCGGC	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	118
PkrI	GCNGC	2 cut(s)	15, 152
PluTI	GGCGCC	1 cut(s)	171
Ppu21I	YACGTR	1 cut(s)	113
PspN4I	GGNNCC	1 cut(s)	169
RseI	CAYNNNNRTG	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	2 cut(s)	14, 151
ScrFI	CCNGG	1 cut(s)	131
SetI	ASST	5 cut(s)	24, 61, 78, 115, 144
SfoI	GGCGCC	1 cut(s)	169
SmiMI	CAYNNNNRTG	1 cut(s)	180
Sse9I	AATT	4 cut(s)	8, 95, 237, 253
SsiI	CCGC	1 cut(s)	150
SspDI	GGCGCC	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	129
StyI	CCWWGG	1 cut(s)	196
TaiI	ACGT	2 cut(s)	24, 115
TasI	AATT	4 cut(s)	8, 95, 237, 253
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TseI	GCWGC	1 cut(s)	13
TspDTI	ATGAA	3 cut(s)	17, 44, 68
XapI	RAATTY	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.