Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0020622

Physical Location & Seq

Genomic Coordinates Reverse (-)

67064297 .. 67064866

Gene Structure 570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG361500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGAAGAGACACAGGCTGATGATACTGAAAGCTTACTGGCTGTATAAGCTTCATGGTCTTGGTCAGGAATTCAAGTGTGAGATACGTGGGAATCAGAGTTACCGGGGGTTAGAGCTTTTGAGCGGCATTTTAAGGAATGGCGCCGGCCATCAGCATGGAATGCCTTGCCTTGGCATACCAAACACCAAGAACTTCAACGCCATCACATCAATTGAGAAGCACAAGAATTGTGGAAGAGGATACAAGCAAGGCAAGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0005829 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043900 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045694 GO:0046483 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0065003 GO:0065007 GO:0070013 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF3449 SF3A3 SF3a60_bindingd Telomere_Sde2_2

Protein Analysis

86

Amino Acids

9.77

Weight (kDa)

10.09

Isoelectric Point (pI)

26.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SF3a60_Prp9_C	PF11931	11 - 76	8.1e-18	SF3a60/Prp9 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0020622)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000006356
rosa_multiflora	Rmu_sc0002327.1_g000010 Rmu_sc0004398.1_g000001
rosa_samantha	Rh4AG361500 Rh4BG372700 Rh4CG386800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	140
AccBSI	CCGCTC	1 cut(s)	123
AciI	CCGC	1 cut(s)	123
AcoI	YGGCCR	1 cut(s)	145
AcsI	RAATTY	1 cut(s)	68
AcyI	GRCGYC	1 cut(s)	141
AfiI	CCNNNNNNNGG	1 cut(s)	170
AgsI	TTSAA	2 cut(s)	73, 196
AluBI	AGCT	3 cut(s)	32, 49, 115
AluI	AGCT	3 cut(s)	32, 49, 115
AoxI	GGCC	1 cut(s)	145
ApoI	RAATTY	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	143
AsuC2I	CCSGG	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	140
BccI	CCATC	2 cut(s)	156, 209
BciVI	GTATCC	1 cut(s)	233
BcnI	CCSGG	1 cut(s)	104
BfoI	RGCGCY	1 cut(s)	144
BfuI	GTATCC	1 cut(s)	233
BisI	GCNGC	1 cut(s)	124
BlsI	GCNGC	1 cut(s)	125
Bme1390I	CCNGG	1 cut(s)	104
BmiI	GGNNCC	1 cut(s)	142
BmrFI	CCNGG	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	104
BsaAI	YACGTR	1 cut(s)	86
BsaHI	GRCGYC	1 cut(s)	141
BsaJI	CCNNGG	2 cut(s)	103, 169
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse118I	RCCGGY	1 cut(s)	143
Bse1I	ACTGG	1 cut(s)	41
BseDI	CCNNGG	2 cut(s)	103, 169
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseNI	ACTGG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	147
BshNI	GGYRCC	1 cut(s)	140
BsiSI	CCGG	2 cut(s)	103, 144
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmI	GAATGC	1 cut(s)	165
BsnI	GGCC	1 cut(s)	147
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	1 cut(s)	147
BspLI	GGNNCC	1 cut(s)	142
BspT107I	GGYRCC	1 cut(s)	140
BsrBI	CCGCTC	1 cut(s)	123
BsrFI	RCCGGY	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	41
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	2 cut(s)	103, 169
BssNI	GRCGYC	1 cut(s)	141
BssT1I	CCWWGG	1 cut(s)	169
Bst6I	CTCTTC	1 cut(s)	229
BstACI	GRCGYC	1 cut(s)	141
BstAPI	GCANNNNNTGC	1 cut(s)	160
BstBAI	YACGTR	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	145
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	143
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 160
BstSCI	CCNGG	1 cut(s)	102
BstXI	CCANNNNNNTGG	1 cut(s)	155
BsuI	GTATCC	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	147
Cac8I	GCNNGC	1 cut(s)	145
CfoI	GCGC	1 cut(s)	143
Cfr10I	RCCGGY	1 cut(s)	143
CspCI	CAANNNNNGTGG	2 cut(s)	211, 246
CviAII	CATG	2 cut(s)	53, 155
CviJI	RGCY	6 cut(s)	16, 32, 40, 49, 115, 147
CviKI_1	RGCY	6 cut(s)	16, 32, 40, 49, 115, 147
DinI	GGCGCC	1 cut(s)	142
EaeI	YGGCCR	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	229
EarI	CTCTTC	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	169
EcoRI	GAATTC	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	169
EgeI	GGCGCC	1 cut(s)	142
EheI	GGCGCC	1 cut(s)	142
ErhI	CCWWGG	1 cut(s)	169
FaeI	CATG	2 cut(s)	56, 158
FaiI	YATR	4 cut(s)	45, 54, 156, 176
FatI	CATG	2 cut(s)	52, 154
Fnu4HI	GCNGC	1 cut(s)	124
Fsp4HI	GCNGC	1 cut(s)	124
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	1 cut(s)	124
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	147
HapII	CCGG	2 cut(s)	103, 144
HhaI	GCGC	1 cut(s)	143
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	2 cut(s)	56, 158
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HindIII	AAGCTT	2 cut(s)	30, 47
HinfI	GANTC	1 cut(s)	91
HpaII	CCGG	2 cut(s)	103, 144
Hpy188I	TCNGA	1 cut(s)	96
Hpy188III	TCNNGA	1 cut(s)	65
HpyCH4IV	ACGT	1 cut(s)	85
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 160
HpySE526I	ACGT	1 cut(s)	85
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	2 cut(s)	56, 158
HspAI	GCGC	1 cut(s)	141
KasI	GGCGCC	1 cut(s)	140
KroI	GCCGGC	1 cut(s)	143
KroNI	GCCGGC	1 cut(s)	145
LpnPI	CCDG	4 cut(s)	22, 50, 116, 157
MaeII	ACGT	1 cut(s)	85
MaeIII	GTNAC	1 cut(s)	98
MbiI	CCGCTC	1 cut(s)	123
MboII	GAAGA	2 cut(s)	16, 246
MfeI	CAATTG	1 cut(s)	210
MluCI	AATT	3 cut(s)	68, 210, 226
Mly113I	GGCGCC	1 cut(s)	141
MnlI	CCTC	1 cut(s)	230
MroNI	GCCGGC	1 cut(s)	143
MseI	TTAA	1 cut(s)	131
MslI	CAYNNNNRTG	1 cut(s)	153
MspI	CCGG	2 cut(s)	103, 144
MspR9I	CCNGG	1 cut(s)	104
MunI	CAATTG	1 cut(s)	210
Mva1269I	GAATGC	1 cut(s)	165
MwoI	GCNNNNNNNGC	2 cut(s)	46, 160
NaeI	GCCGGC	1 cut(s)	145
NarI	GGCGCC	1 cut(s)	141
NciI	CCSGG	1 cut(s)	104
NgoMIV	GCCGGC	1 cut(s)	143
NlaIII	CATG	2 cut(s)	56, 158
NlaIV	GGNNCC	1 cut(s)	142
PctI	GAATGC	1 cut(s)	165
PdiI	GCCGGC	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	91
PkrI	GCNGC	1 cut(s)	125
PluTI	GGCGCC	1 cut(s)	144
Ppu21I	YACGTR	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	142
RseI	CAYNNNNRTG	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	131
SatI	GCNGC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	104
SetI	ASST	4 cut(s)	34, 51, 88, 117
SfoI	GGCGCC	1 cut(s)	142
SmiMI	CAYNNNNRTG	1 cut(s)	153
Sse9I	AATT	3 cut(s)	68, 210, 226
SsiI	CCGC	1 cut(s)	123
SspDI	GGCGCC	1 cut(s)	140
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	1 cut(s)	169
TaiI	ACGT	1 cut(s)	88
TasI	AATT	3 cut(s)	68, 210, 226
TauI	GCSGC	1 cut(s)	126
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TspDTI	ATGAA	2 cut(s)	17, 41
XapI	RAATTY	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.