Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0025058

Physical Location & Seq

Genomic Coordinates Reverse (-)

10425011 .. 10425833

Gene Structure 823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006780

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGATCGGATTAACCTCTATTGATTTTGCCAAGCAAACCATGAACACGAAGAGCAAATCTCTGAGCCCACGAACCCAGTTTGAGGACTGCTCGTCTTCTAATTACGACCTCAAAGCCATACCTGGAAAAACCATTTTCAGCCAGACCCAGTCCGATTCTTCCCCCAGAGACCCGAAACGACTCAAACCCTCTTCAGATTTCTCCTCCACCACCACCACCTCCTATCTCCAACCCGTTTCTCTCCTCCTCACCAATGAGTCAACTCGCTCGGTGGTAGTTGTCGACTCGCAAGAGAATGGCGTCAGACTCGTCCACGGCCTGCCCCGAAGCACTTTCGAAGGCATGCCAAGGGAGCAGCAGGCCTTGCTGGAGTTGGAAGACATGCCGGCGAGGCTGAAGAGGGAGAAGGAGGCGCTAAGGAACATGCTCAGGATCAATGGGTATTTCGGAATTGGGATCGGCAAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000910 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006808 GO:0006810 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009739 GO:0009740 GO:0009751 GO:0009753 GO:0009755 GO:0009863 GO:0009867 GO:0009889 GO:0009892 GO:0009893 GO:0009894 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010187 GO:0010218 GO:0010232 GO:0010233 GO:0010453 GO:0010454 GO:0010468 GO:0010476 GO:0010556 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0014070 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0032501 GO:0032870 GO:0033206 GO:0033993 GO:0035690 GO:0040008 GO:0042176 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0045926 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048638 GO:0048640 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051252 GO:0051301 GO:0051321 GO:0051716 GO:0060255 GO:0061640 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071407 GO:0071446 GO:0071495 GO:0080050 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1900032 GO:1900033 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903046 GO:1903506 GO:1905613 GO:1905614 GO:1905622 GO:2000024 GO:2000026 GO:2000033 GO:2000034 GO:2000112 GO:2000241 GO:2000377 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DELLA GRAS

Protein Analysis

157

Amino Acids

17.38

Weight (kDa)

9.1

Isoelectric Point (pI)

53.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025058)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0290711
rosa_laevigata	RLG00000006780
rosa_multiflora	Rmu_sc0000942.1_g000026

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	282
AclWI	GGATC	2 cut(s)	440, 464
AcuI	CTGAAG	2 cut(s)	177, 416
AcyI	GRCGYC	1 cut(s)	300
AfiI	CCNNNNNNNGG	1 cut(s)	82
AhdI	GACNNNNNGTC	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	121
Alw26I	GTCTC	1 cut(s)	162
AlwI	GGATC	2 cut(s)	440, 464
AoxI	GGCC	2 cut(s)	316, 360
ApeKI	GCWGC	1 cut(s)	355
AspLEI	GCGC	1 cut(s)	415
AsuHPI	GGTGA	1 cut(s)	241
AsuII	TTCGAA	1 cut(s)	336
BanII	GRGCYC	1 cut(s)	68
BbsI	GAAGAC	2 cut(s)	87, 384
BbvI	GCAGC	1 cut(s)	367
BceAI	ACGGC	1 cut(s)	331
BciT130I	CCWGG	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	162
BfaI	CTAG	1 cut(s)	469
BfoI	RGCGCY	1 cut(s)	416
BglI	GCCNNNNNGGC	1 cut(s)	391
BisI	GCNGC	1 cut(s)	356
BlsI	GCNGC	1 cut(s)	357
Bme1390I	CCNGG	1 cut(s)	123
BmeRI	GACNNNNNGTC	1 cut(s)	91
BmrFI	CCNGG	1 cut(s)	123
BmrI	ACTGGG	2 cut(s)	70, 142
BmuI	ACTGGG	2 cut(s)	70, 142
BpiI	GAAGAC	2 cut(s)	87, 384
BplI	GAGNNNNNCTC	4 cut(s)	43, 75, 74, 106
BpmI	CTGGAG	1 cut(s)	389
Bpu10I	CCTNAGC	2 cut(s)	416, 428
Bpu14I	TTCGAA	1 cut(s)	336
BsaHI	GRCGYC	1 cut(s)	300
BsaI	GGTCTC	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	313, 347
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse118I	RCCGGY	1 cut(s)	385
Bse1I	ACTGG	2 cut(s)	76, 148
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	2 cut(s)	313, 347
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMII	CTCAG	2 cut(s)	53, 442
BseNI	ACTGG	2 cut(s)	76, 148
BseRI	GAGGAG	3 cut(s)	193, 233, 236
BseXI	GCAGC	1 cut(s)	367
BshFI	GGCC	2 cut(s)	318, 362
BsiSI	CCGG	1 cut(s)	386
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	162
BsnI	GGCC	2 cut(s)	318, 362
Bso31I	GGTCTC	1 cut(s)	162
Bsp119I	TTCGAA	1 cut(s)	336
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	3 cut(s)	3, 432, 456
BspANI	GGCC	2 cut(s)	318, 362
BspCNI	CTCAG	2 cut(s)	54, 441
BspPI	GGATC	2 cut(s)	440, 464
BspQI	GCTCTTC	1 cut(s)	44
BspT104I	TTCGAA	1 cut(s)	336
BspTNI	GGTCTC	1 cut(s)	162
BsrFI	RCCGGY	1 cut(s)	385
BsrI	ACTGG	2 cut(s)	76, 148
BssAI	RCCGGY	1 cut(s)	385
BssECI	CCNNGG	2 cut(s)	313, 347
BssMI	GATC	3 cut(s)	3, 432, 456
BssNI	GRCGYC	1 cut(s)	300
BssT1I	CCWWGG	1 cut(s)	347
Bst2UI	CCWGG	1 cut(s)	123
Bst6I	CTCTTC	3 cut(s)	44, 196, 392
BstACI	GRCGYC	1 cut(s)	300
BstAPI	GCANNNNNTGC	1 cut(s)	364
BstBI	TTCGAA	1 cut(s)	336
BstC8I	GCNNGC	4 cut(s)	320, 344, 360, 387
BstDEI	CTNAG	3 cut(s)	62, 416, 428
BstDSI	CCRYGG	1 cut(s)	313
BstH2I	RGCGCY	1 cut(s)	416
BstHHI	GCGC	1 cut(s)	415
BstKTI	GATC	3 cut(s)	6, 435, 459
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	3 cut(s)	3, 432, 456
BstMWI	GCNNNNNNNGC	3 cut(s)	352, 364, 391
BstNI	CCWGG	1 cut(s)	123
BstNSI	RCATGY	3 cut(s)	346, 385, 427
BstSCI	CCNGG	1 cut(s)	121
BstV1I	GCAGC	1 cut(s)	367
BstV2I	GAAGAC	2 cut(s)	87, 384
BsuRI	GGCC	2 cut(s)	318, 362
BtgI	CCRYGG	1 cut(s)	313
Cac8I	GCNNGC	4 cut(s)	320, 344, 360, 387
CfoI	GCGC	1 cut(s)	415
Cfr10I	RCCGGY	1 cut(s)	385
CseI	GACGC	1 cut(s)	289
CviAII	CATG	4 cut(s)	40, 343, 382, 424
CviJI	RGCY	6 cut(s)	66, 116, 141, 318, 362, 394
CviKI_1	RGCY	6 cut(s)	66, 116, 141, 318, 362, 394
DdeI	CTNAG	3 cut(s)	62, 416, 428
DpnI	GATC	3 cut(s)	5, 434, 458
DpnII	GATC	3 cut(s)	3, 432, 456
DriI	GACNNNNNGTC	1 cut(s)	91
Eam1104I	CTCTTC	3 cut(s)	44, 196, 392
Eam1105I	GACNNNNNGTC	1 cut(s)	91
EarI	CTCTTC	3 cut(s)	44, 196, 392
Eco130I	CCWWGG	1 cut(s)	347
Eco147I	AGGCCT	1 cut(s)	362
Eco24I	GRGCYC	1 cut(s)	68
Eco31I	GGTCTC	1 cut(s)	162
Eco57I	CTGAAG	2 cut(s)	177, 416
EcoRII	CCWGG	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	347
EcoT38I	GRGCYC	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	347
FaeI	CATG	4 cut(s)	43, 346, 385, 427
FaiI	YATR	5 cut(s)	41, 119, 344, 383, 425
FatI	CATG	4 cut(s)	39, 342, 381, 423
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	1 cut(s)	356
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	1 cut(s)	356
FspBI	CTAG	1 cut(s)	469
GlaI	GCGC	1 cut(s)	414
GluI	GCNGC	1 cut(s)	356
GsuI	CTGGAG	1 cut(s)	389
HaeII	RGCGCY	1 cut(s)	416
HaeIII	GGCC	2 cut(s)	318, 362
HapII	CCGG	1 cut(s)	386
HgaI	GACGC	1 cut(s)	289
HhaI	GCGC	1 cut(s)	415
Hin1I	GRCGYC	1 cut(s)	300
Hin1II	CATG	4 cut(s)	43, 346, 385, 427
Hin6I	GCGC	1 cut(s)	413
HinP1I	GCGC	1 cut(s)	413
HincII	GTYRAC	2 cut(s)	261, 283
HindII	GTYRAC	2 cut(s)	261, 283
HinfI	GANTC	5 cut(s)	155, 180, 257, 284, 306
HpaII	CCGG	1 cut(s)	386
HphI	GGTGA	1 cut(s)	241
Hpy166II	GTNNAC	3 cut(s)	261, 283, 313
Hpy188I	TCNGA	6 cut(s)	8, 63, 154, 196, 305, 449
Hpy188III	TCNNGA	1 cut(s)	430
Hpy8I	GTNNAC	3 cut(s)	261, 283, 313
HpyAV	CCTTC	2 cut(s)	332, 400
HpyF10VI	GCNNNNNNNGC	3 cut(s)	352, 364, 391
HpyF3I	CTNAG	3 cut(s)	62, 416, 428
Hsp92I	GRCGYC	1 cut(s)	300
Hsp92II	CATG	4 cut(s)	43, 346, 385, 427
HspAI	GCGC	1 cut(s)	413
KroI	GCCGGC	1 cut(s)	385
KroNI	GCCGGC	1 cut(s)	387
Kzo9I	GATC	3 cut(s)	3, 432, 456
LguI	GCTCTTC	1 cut(s)	44
LmnI	GCTCC	1 cut(s)	352
Lsp1109I	GCAGC	1 cut(s)	367
MaeI	CTAG	1 cut(s)	469
MalI	GATC	3 cut(s)	5, 434, 458
MboI	GATC	3 cut(s)	3, 432, 456
MboII	GAAGA	6 cut(s)	61, 87, 150, 183, 389, 409
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	2 cut(s)	100, 450
MlyI	GAGTC	4 cut(s)	174, 266, 278, 300
MmeI	TCCRAC	2 cut(s)	253, 354
MroNI	GCCGGC	1 cut(s)	385
MseI	TTAA	1 cut(s)	11
MspI	CCGG	1 cut(s)	386
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	3 cut(s)	352, 364, 391
NaeI	GCCGGC	1 cut(s)	387
NdeII	GATC	3 cut(s)	3, 432, 456
NgoMIV	GCCGGC	1 cut(s)	385
NlaIII	CATG	4 cut(s)	43, 346, 385, 427
NspI	RCATGY	3 cut(s)	346, 385, 427
NspV	TTCGAA	1 cut(s)	336
PaeI	GCATGC	1 cut(s)	346
PceI	AGGCCT	1 cut(s)	362
PciSI	GCTCTTC	1 cut(s)	44
PdiI	GCCGGC	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	155
PflFI	GACNNNGTC	1 cut(s)	148
PkrI	GCNGC	1 cut(s)	357
PleI	GAGTC	4 cut(s)	174, 265, 278, 300
PpsI	GAGTC	4 cut(s)	174, 265, 278, 300
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PsyI	GACNNNGTC	1 cut(s)	148
SalI	GTCGAC	1 cut(s)	281
SapI	GCTCTTC	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	1 cut(s)	356
Sau3AI	GATC	3 cut(s)	3, 432, 456
SchI	GAGTC	4 cut(s)	174, 266, 278, 300
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	4 cut(s)	17, 111, 124, 221
SfuI	TTCGAA	1 cut(s)	336
SphI	GCATGC	1 cut(s)	346
Sse9I	AATT	2 cut(s)	100, 450
SseBI	AGGCCT	1 cut(s)	362
SspMI	CTAG	1 cut(s)	469
StuI	AGGCCT	1 cut(s)	362
StyD4I	CCNGG	1 cut(s)	121
StyI	CCWWGG	1 cut(s)	347
TaqI	TCGA	2 cut(s)	282, 336
TasI	AATT	2 cut(s)	100, 450
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TseI	GCWGC	1 cut(s)	355
TspDTI	ATGAA	1 cut(s)	56
Tth111I	GACNNNGTC	1 cut(s)	148
XceI	RCATGY	3 cut(s)	346, 385, 427
XmiI	GTMKAC	1 cut(s)	282
XspI	CTAG	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.