Rmu_sc0000942.1_g000026

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000942.1
OG0025058
Physical Location & Seq
Forward (+)
149820 .. 150227
408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000942.1_g000026.1.cds

Sequence Viewer

Length: 408 bp
atgaacacgaagagcaaatctctgagaccacgaatccaattcgaggactgctcgtcttccaattacgacctcaaagccatacctggaaaaaccattttcagccaaactcagttcaattcttcccccagagacctgaaacgactcaaaccctcttcagatttctcctccaccaccaccaccacctcctatctccaacccgtctccctcctcctcaccaatgagtcaactcgctcggtggtatttgtcgactcgcaaaagaacgacgtcagactcgtccacgacctgcaccgaagcagtttcgaaggcacgtcgagggagcagcaggccttgctggagttggaggacacgtcggcgaggctgaagagggagaaggaggcgctaaggaacatgctcagttacttgacgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000910 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006808 GO:0006810 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009739 GO:0009740 GO:0009751 GO:0009753 GO:0009755 GO:0009863 GO:0009867 GO:0009889 GO:0009892 GO:0009893 GO:0009894 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010187 GO:0010218 GO:0010232 GO:0010233 GO:0010453 GO:0010454 GO:0010468 GO:0010476 GO:0010556 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0014070 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0032501 GO:0032870 GO:0033206 GO:0033993 GO:0035690 GO:0040008 GO:0042176 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0045926 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048638 GO:0048640 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051252 GO:0051301 GO:0051321 GO:0051716 GO:0060255 GO:0061640 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071407 GO:0071446 GO:0071495 GO:0080050 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1900032 GO:1900033 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903046 GO:1903506 GO:1905613 GO:1905614 GO:1905622 GO:2000024 GO:2000026 GO:2000033 GO:2000034 GO:2000112 GO:2000241 GO:2000377 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
DELLA GRAS

Protein Analysis

135

Amino Acids

15.41

Weight (kDa)

9.37

Isoelectric Point (pI)

47.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025058)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0290711
rosa_laevigata RLG00000006780
rosa_multiflora Rmu_sc0000942.1_g000026

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 267
Acc36I ACCTGC 1 cut(s) 291
AccI GTMKAC 1 cut(s) 246
AcuI CTGAAG 2 cut(s) 138, 380
AcyI GRCGYC 1 cut(s) 264
AfiI CCNNNNNNNGG 1 cut(s) 43
AflIII ACRYGT 1 cut(s) 345
AgsI TTSAA 1 cut(s) 115
AhdI GACNNNNNGTC 1 cut(s) 52
AjiI CACGTC 2 cut(s) 309, 348
AjnI CCWGG 1 cut(s) 82
Alw26I GTCTC 3 cut(s) 19, 123, 205
AoxI GGCC 1 cut(s) 324
ApeKI GCWGC 1 cut(s) 319
AspLEI GCGC 1 cut(s) 379
AsuHPI GGTGA 1 cut(s) 205
AsuII TTCGAA 1 cut(s) 300
BbsI GAAGAC 1 cut(s) 48
BbvI GCAGC 1 cut(s) 331
BciT130I CCWGG 1 cut(s) 84
BcoDI GTCTC 3 cut(s) 19, 123, 205
BfoI RGCGCY 1 cut(s) 380
BfuAI ACCTGC 1 cut(s) 291
BisI GCNGC 1 cut(s) 320
BlsI GCNGC 1 cut(s) 321
Bme1390I CCNGG 1 cut(s) 84
BmeRI GACNNNNNGTC 1 cut(s) 52
BmgBI CACGTC 2 cut(s) 309, 348
BmrFI CCNGG 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 48
BplI GAGNNNNNCTC 3 cut(s) 36, 35, 67
BpmI CTGGAG 1 cut(s) 353
Bpu10I CCTNAGC 1 cut(s) 380
Bpu14I TTCGAA 1 cut(s) 300
BsaHI GRCGYC 1 cut(s) 264
BsaI GGTCTC 2 cut(s) 19, 123
BsaXI ACNNNNNCTCC 2 cut(s) 332, 362
Bsc4I CCNNNNNNNGG 1 cut(s) 43
BseBI CCWGG 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMII CTCAG 3 cut(s) 14, 122, 406
BseRI GAGGAG 3 cut(s) 154, 197, 200
BseXI GCAGC 1 cut(s) 331
BsgI GTGCAG 1 cut(s) 269
BshFI GGCC 1 cut(s) 326
BslI CCNNNNNNNGG 1 cut(s) 43
BsmAI GTCTC 3 cut(s) 19, 123, 205
BsmBI CGTCTC 1 cut(s) 205
BsnI GGCC 1 cut(s) 326
Bso31I GGTCTC 2 cut(s) 19, 123
Bsp119I TTCGAA 1 cut(s) 300
BspANI GGCC 1 cut(s) 326
BspCNI CTCAG 3 cut(s) 15, 121, 405
BspMI ACCTGC 1 cut(s) 291
BspQI GCTCTTC 1 cut(s) 5
BspT104I TTCGAA 1 cut(s) 300
BspTNI GGTCTC 2 cut(s) 19, 123
BssNI GRCGYC 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 84
Bst6I CTCTTC 3 cut(s) 5, 157, 356
BstACI GRCGYC 1 cut(s) 264
BstAPI GCANNNNNTGC 1 cut(s) 328
BstBI TTCGAA 1 cut(s) 300
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 4 cut(s) 23, 108, 380, 392
BstH2I RGCGCY 1 cut(s) 380
BstHHI GCGC 1 cut(s) 379
BstMAI GTCTC 3 cut(s) 19, 123, 205
BstMWI GCNNNNNNNGC 1 cut(s) 328
BstNI CCWGG 1 cut(s) 84
BstNSI RCATGY 1 cut(s) 391
BstSCI CCNGG 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 331
BstV2I GAAGAC 1 cut(s) 48
BsuRI GGCC 1 cut(s) 326
BtrI CACGTC 2 cut(s) 309, 348
BveI ACCTGC 1 cut(s) 291
Cac8I GCNNGC 1 cut(s) 324
CfoI GCGC 1 cut(s) 379
CviAII CATG 1 cut(s) 388
CviJI RGCY 4 cut(s) 77, 102, 326, 358
CviKI_1 RGCY 4 cut(s) 77, 102, 326, 358
DdeI CTNAG 4 cut(s) 23, 108, 380, 392
DriI GACNNNNNGTC 1 cut(s) 52
Eam1104I CTCTTC 3 cut(s) 5, 157, 356
Eam1105I GACNNNNNGTC 1 cut(s) 52
EarI CTCTTC 3 cut(s) 5, 157, 356
Eco147I AGGCCT 1 cut(s) 326
Eco31I GGTCTC 2 cut(s) 19, 123
Eco57I CTGAAG 2 cut(s) 138, 380
EcoRII CCWGG 1 cut(s) 82
Esp3I CGTCTC 1 cut(s) 205
FaeI CATG 1 cut(s) 391
FaiI YATR 2 cut(s) 80, 389
FatI CATG 1 cut(s) 387
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 1 cut(s) 320
Fsp4HI GCNGC 1 cut(s) 320
GlaI GCGC 1 cut(s) 378
GluI GCNGC 1 cut(s) 320
GsuI CTGGAG 1 cut(s) 353
HaeII RGCGCY 1 cut(s) 380
HaeIII GGCC 1 cut(s) 326
HhaI GCGC 1 cut(s) 379
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 1 cut(s) 391
Hin6I GCGC 1 cut(s) 377
HinP1I GCGC 1 cut(s) 377
HincII GTYRAC 2 cut(s) 225, 247
HindII GTYRAC 2 cut(s) 225, 247
HinfI GANTC 5 cut(s) 33, 141, 221, 248, 270
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 3 cut(s) 225, 247, 277
Hpy188I TCNGA 3 cut(s) 24, 157, 269
Hpy8I GTNNAC 3 cut(s) 225, 247, 277
Hpy99I CGWCG 3 cut(s) 266, 313, 352
HpyAV CCTTC 2 cut(s) 296, 364
HpyCH4IV ACGT 4 cut(s) 264, 308, 347, 404
HpyCH4V TGCA 1 cut(s) 286
HpyF10VI GCNNNNNNNGC 1 cut(s) 328
HpyF3I CTNAG 4 cut(s) 23, 108, 380, 392
HpySE526I ACGT 4 cut(s) 264, 308, 347, 404
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 1 cut(s) 391
HspAI GCGC 1 cut(s) 377
LguI GCTCTTC 1 cut(s) 5
LmnI GCTCC 1 cut(s) 316
LpnPI CCDG 7 cut(s) 69, 96, 139, 146, 296, 308, 317
Lsp1109I GCAGC 1 cut(s) 331
MaeII ACGT 4 cut(s) 264, 308, 347, 404
MaeIII GTNAC 1 cut(s) 395
MboII GAAGA 5 cut(s) 22, 48, 111, 144, 373
MluCI AATT 3 cut(s) 38, 61, 115
MlyI GAGTC 4 cut(s) 135, 230, 242, 264
MmeI TCCRAC 2 cut(s) 217, 318
MspR9I CCNGG 1 cut(s) 84
MvaI CCWGG 1 cut(s) 84
MwoI GCNNNNNNNGC 1 cut(s) 328
NlaIII CATG 1 cut(s) 391
NspI RCATGY 1 cut(s) 391
NspV TTCGAA 1 cut(s) 300
PceI AGGCCT 1 cut(s) 326
PciSI GCTCTTC 1 cut(s) 5
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PfeI GAWTC 1 cut(s) 33
PkrI GCNGC 1 cut(s) 321
PleI GAGTC 4 cut(s) 135, 229, 242, 264
PpsI GAGTC 4 cut(s) 135, 229, 242, 264
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
SalI GTCGAC 1 cut(s) 245
SapI GCTCTTC 1 cut(s) 5
SatI GCNGC 1 cut(s) 320
SchI GAGTC 4 cut(s) 135, 230, 242, 264
ScrFI CCNGG 1 cut(s) 84
SetI ASST 9 cut(s) 72, 85, 135, 185, 267, 285, 311, 350, 407
SfuI TTCGAA 1 cut(s) 300
Sse9I AATT 3 cut(s) 38, 61, 115
SseBI AGGCCT 1 cut(s) 326
StuI AGGCCT 1 cut(s) 326
StyD4I CCNGG 1 cut(s) 82
TaiI ACGT 4 cut(s) 267, 311, 350, 407
TaqI TCGA 4 cut(s) 42, 246, 300, 311
TasI AATT 3 cut(s) 38, 61, 115
TfiI GAWTC 1 cut(s) 33
TseI GCWGC 1 cut(s) 319
TspDTI ATGAA 1 cut(s) 17
XceI RCATGY 1 cut(s) 391
XmiI GTMKAC 1 cut(s) 246
ZraI GACGTC 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.