RLG00000007356

vesicle-mediated transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0022877
Physical Location & Seq
Forward (+)
16112145 .. 16114008
1864 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007356

Sequence Viewer

Length: 600 bp
ATGGGAGTCCTTCTCCCAAGCAGGAGGCAGTTTGACTGGCTGATGAAACTAGCGCTTCTCGATAAGACATCGACACTAAAAGTTGGAGAATCGTCCACTGATATGGAACCCACTGCTTCCTGCTACCTAACAACACGAAACTCCAACAGCACCACCACCACCACCACCACCGTCCCCACCGACAAGCCCGCCTTCTACACTTCTTCTGACCCTGAAAACTTCCAAGCCACCTTCAACCTCAACAGCCTCTGTGATGAGCTCGCTGTCGGAGCTGCAGAGGCCGATGGCCTTGACTCCTTCCCGGTTGATCAGGGAGACCAAATGCTTGTTGACTTTGCCGGCCAAGACCATGGAGACGATCTCCATGATGGGCGCGTCGGTGACACGGAGGCCGTCGTGGAAGTTGACCTCGATGTTGAGGCGCTTGAGCAAGAGGTTGATCTCGGGGTCGCCGCCGTGGACCAAGATGGGGCGGAGGCCGACGCAGGGGAGGAGGACGAGGTCTCTGACGACGGTGGCCTAGAGGGTCTCGTCCTTCATGGCGGCGCTGCGGTACTTGATGACGATGGTTTTGCCTCAGAATTTCTGGATGAAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

21.03

Weight (kDa)

4.05

Isoelectric Point (pI)

28.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022877)

Species Orthologous Gene IDs
rosa_laevigata RLG00000007356
rosa_multiflora Rmu_sc0001837.1_g000003 Rmu_ssc0000026.1_g000001
rosa_samantha Rh3AG165200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 375
AciI CCGC 5 cut(s) 189, 453, 473, 543, 551
AcoI YGGCCR 1 cut(s) 340
AcsI RAATTY 1 cut(s) 581
AfaI GTAC 1 cut(s) 555
AfeI AGCGCT 1 cut(s) 54
AfiI CCNNNNNNNGG 2 cut(s) 469, 486
AgsI TTSAA 1 cut(s) 235
AluBI AGCT 2 cut(s) 259, 272
AluI AGCT 2 cut(s) 259, 272
Alw21I GWGCWC 1 cut(s) 261
Alw26I GTCTC 4 cut(s) 309, 348, 508, 533
AlwNI CAGNNNCTG 1 cut(s) 249
Ama87I CYCGRG 1 cut(s) 443
Aor51HI AGCGCT 1 cut(s) 54
AoxI GGCC 6 cut(s) 279, 286, 340, 390, 477, 517
ApeKI GCWGC 2 cut(s) 272, 548
ApoI RAATTY 1 cut(s) 581
ArsI GACNNNNNNTTYG 2 cut(s) 554, 586
AspLEI GCGC 4 cut(s) 55, 375, 424, 548
AspS9I GGNCC 1 cut(s) 460
AsuC2I CCSGG 1 cut(s) 302
AsuHPI GGTGA 1 cut(s) 392
AvaI CYCGRG 1 cut(s) 443
AvaII GGWCC 1 cut(s) 460
BanII GRGCYC 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 261
BbvI GCAGC 2 cut(s) 259, 535
BccI CCATC 4 cut(s) 278, 362, 461, 560
BceAI ACGGC 2 cut(s) 377, 440
BcgI CGANNNNNNTGC 2 cut(s) 554, 588
BclI TGATCA 1 cut(s) 307
BcnI CCSGG 1 cut(s) 302
BcoDI GTCTC 4 cut(s) 309, 348, 508, 533
BfaI CTAG 2 cut(s) 50, 521
BfmI CTRYAG 1 cut(s) 273
BfoI RGCGCY 3 cut(s) 56, 425, 549
BisI GCNGC 4 cut(s) 273, 453, 544, 549
BlsI GCNGC 4 cut(s) 274, 454, 545, 550
Bme1390I CCNGG 1 cut(s) 302
Bme18I GGWCC 1 cut(s) 460
BmeT110I CYCGRG 1 cut(s) 443
BmgT120I GGNCC 1 cut(s) 460
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 302
BplI GAGNNNNNCTC 3 cut(s) 29, 345, 377
BpuEI CTTGAG 1 cut(s) 446
BpuMI CCSGG 1 cut(s) 302
BsaI GGTCTC 3 cut(s) 309, 508, 533
BsaJI CCNNGG 2 cut(s) 349, 456
Bsc4I CCNNNNNNNGG 2 cut(s) 469, 486
Bse118I RCCGGY 1 cut(s) 338
Bse1I ACTGG 1 cut(s) 41
BseDI CCNNGG 2 cut(s) 349, 456
BseGI GGATG 1 cut(s) 595
BseLI CCNNNNNNNGG 2 cut(s) 469, 486
BseMII CTCAG 1 cut(s) 591
BseNI ACTGG 1 cut(s) 41
BseRI GAGGAG 1 cut(s) 506
BseXI GCAGC 2 cut(s) 259, 535
Bsh1236I CGCG 1 cut(s) 375
BshFI GGCC 6 cut(s) 281, 288, 342, 392, 479, 519
BsiHKAI GWGCWC 1 cut(s) 261
BsiHKCI CYCGRG 1 cut(s) 443
BsiSI CCGG 2 cut(s) 302, 339
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 2 cut(s) 469, 486
BsmAI GTCTC 4 cut(s) 309, 348, 508, 533
BsmBI CGTCTC 1 cut(s) 348
BsmFI GGGAC 1 cut(s) 158
BsnI GGCC 6 cut(s) 281, 288, 342, 392, 479, 519
Bso31I GGTCTC 3 cut(s) 309, 508, 533
BsoBI CYCGRG 1 cut(s) 443
Bsp1286I GDGCHC 1 cut(s) 261
Bsp143I GATC 3 cut(s) 307, 358, 439
Bsp19I CCATGG 1 cut(s) 349
BspACI CCGC 5 cut(s) 189, 453, 473, 543, 551
BspANI GGCC 6 cut(s) 281, 288, 342, 392, 479, 519
BspCNI CTCAG 1 cut(s) 590
BspFNI CGCG 1 cut(s) 375
BspLI GGNNCC 1 cut(s) 108
BspMAI CTGCAG 1 cut(s) 277
BspTNI GGTCTC 3 cut(s) 309, 508, 533
BsrFI RCCGGY 1 cut(s) 338
BsrI ACTGG 1 cut(s) 41
BssAI RCCGGY 1 cut(s) 338
BssECI CCNNGG 2 cut(s) 349, 456
BssMI GATC 3 cut(s) 307, 358, 439
BssT1I CCWWGG 1 cut(s) 349
Bst4CI ACNGT 2 cut(s) 172, 515
BstC8I GCNNGC 3 cut(s) 189, 261, 340
BstDEI CTNAG 1 cut(s) 577
BstDSI CCRYGG 2 cut(s) 349, 456
BstF5I GGATG 1 cut(s) 595
BstFNI CGCG 1 cut(s) 375
BstH2I RGCGCY 3 cut(s) 56, 425, 549
BstHHI GCGC 4 cut(s) 55, 375, 424, 548
BstKTI GATC 3 cut(s) 310, 361, 442
BstMAI GTCTC 4 cut(s) 309, 348, 508, 533
BstMBI GATC 3 cut(s) 307, 358, 439
BstMWI GCNNNNNNNGC 2 cut(s) 269, 278
BstSCI CCNGG 1 cut(s) 300
BstSFI CTRYAG 1 cut(s) 273
BstUI CGCG 1 cut(s) 375
BstV1I GCAGC 2 cut(s) 259, 535
BstXI CCANNNNNNTGG 2 cut(s) 103, 350
BsuRI GGCC 6 cut(s) 281, 288, 342, 392, 479, 519
BtgI CCRYGG 2 cut(s) 349, 456
BtsCI GGATG 1 cut(s) 595
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 2 cut(s) 96, 111
Cac8I GCNNGC 3 cut(s) 189, 261, 340
CaiI CAGNNNCTG 1 cut(s) 249
CfoI GCGC 4 cut(s) 55, 375, 424, 548
Cfr10I RCCGGY 1 cut(s) 338
Cfr13I GGNCC 1 cut(s) 460
CseI GACGC 2 cut(s) 364, 491
Csp6I GTAC 1 cut(s) 554
CviAII CATG 3 cut(s) 350, 365, 539
CviQI GTAC 1 cut(s) 554
DdeI CTNAG 1 cut(s) 577
DpnI GATC 3 cut(s) 309, 360, 441
DpnII GATC 3 cut(s) 307, 358, 439
EaeI YGGCCR 1 cut(s) 340
EciI GGCGGA 1 cut(s) 488
Ecl136II GAGCTC 1 cut(s) 259
Eco130I CCWWGG 1 cut(s) 349
Eco24I GRGCYC 1 cut(s) 261
Eco31I GGTCTC 3 cut(s) 309, 508, 533
Eco47I GGWCC 1 cut(s) 460
Eco47III AGCGCT 1 cut(s) 54
Eco53kI GAGCTC 1 cut(s) 259
Eco88I CYCGRG 1 cut(s) 443
EcoICRI GAGCTC 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 349
EcoT38I GRGCYC 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 349
Esp3I CGTCTC 1 cut(s) 348
FaeI CATG 3 cut(s) 353, 368, 542
FaiI YATR 4 cut(s) 104, 351, 366, 540
FalI AAGNNNNNCTT 2 cut(s) 176, 208
FaqI GGGAC 1 cut(s) 158
FatI CATG 3 cut(s) 349, 364, 538
FauI CCCGC 1 cut(s) 196
FbaI TGATCA 1 cut(s) 307
Fnu4HI GCNGC 4 cut(s) 273, 453, 544, 549
FriOI GRGCYC 1 cut(s) 261
Fsp4HI GCNGC 4 cut(s) 273, 453, 544, 549
FspBI CTAG 2 cut(s) 50, 521
GlaI GCGC 4 cut(s) 54, 374, 423, 547
GluI GCNGC 4 cut(s) 273, 453, 544, 549
HaeII RGCGCY 3 cut(s) 56, 425, 549
HaeIII GGCC 6 cut(s) 281, 288, 342, 392, 479, 519
HapII CCGG 2 cut(s) 302, 339
HgaI GACGC 2 cut(s) 364, 491
HhaI GCGC 4 cut(s) 55, 375, 424, 548
Hin1II CATG 3 cut(s) 353, 368, 542
Hin6I GCGC 4 cut(s) 53, 373, 422, 546
HinP1I GCGC 4 cut(s) 53, 373, 422, 546
HincII GTYRAC 2 cut(s) 331, 406
HindII GTYRAC 2 cut(s) 331, 406
HinfI GANTC 3 cut(s) 6, 89, 293
HpaII CCGG 2 cut(s) 302, 339
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 4 cut(s) 96, 331, 406, 460
Hpy188I TCNGA 4 cut(s) 208, 269, 508, 580
Hpy188III TCNNGA 2 cut(s) 59, 587
Hpy8I GTNNAC 4 cut(s) 96, 331, 406, 460
Hpy99I CGWCG 4 cut(s) 380, 398, 485, 515
HpyAV CCTTC 6 cut(s) 20, 202, 241, 307, 545, 587
HpyCH4III ACNGT 2 cut(s) 172, 515
HpyCH4V TGCA 1 cut(s) 275
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 278
HpyF3I CTNAG 1 cut(s) 577
Hsp92II CATG 3 cut(s) 353, 368, 542
HspAI GCGC 4 cut(s) 53, 373, 422, 546
KroI GCCGGC 1 cut(s) 338
KroNI GCCGGC 1 cut(s) 340
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 3 cut(s) 307, 358, 439
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 9 cut(s) 7, 22, 133, 225, 296, 315, 352, 471, 572
Lsp1109I GCAGC 2 cut(s) 259, 535
MaeI CTAG 2 cut(s) 50, 521
MaeIII GTNAC 1 cut(s) 380
MalI GATC 3 cut(s) 309, 360, 441
MboI GATC 3 cut(s) 307, 358, 439
MboII GAAGA 1 cut(s) 195
MhlI GDGCHC 1 cut(s) 261
MluCI AATT 1 cut(s) 581
MlyI GAGTC 2 cut(s) 15, 287
MmeI TCCRAC 3 cut(s) 64, 168, 247
MroNI GCCGGC 1 cut(s) 338
MslI CAYNNNNRTG 1 cut(s) 101
MspI CCGG 2 cut(s) 302, 339
MspR9I CCNGG 1 cut(s) 302
MvnI CGCG 1 cut(s) 375
MwoI GCNNNNNNNGC 2 cut(s) 269, 278
NaeI GCCGGC 1 cut(s) 340
NciI CCSGG 1 cut(s) 302
NcoI CCATGG 1 cut(s) 349
NdeII GATC 3 cut(s) 307, 358, 439
NgoMIV GCCGGC 1 cut(s) 338
NlaIII CATG 3 cut(s) 353, 368, 542
NlaIV GGNNCC 1 cut(s) 108
NmuCI GTSAC 1 cut(s) 380
PdiI GCCGGC 1 cut(s) 340
PfeI GAWTC 1 cut(s) 89
PflFI GACNNNGTC 1 cut(s) 500
PkrI GCNGC 4 cut(s) 274, 454, 545, 550
PleI GAGTC 2 cut(s) 14, 287
PpsI GAGTC 2 cut(s) 14, 287
Psp124BI GAGCTC 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 108
PspPI GGNCC 1 cut(s) 460
PstI CTGCAG 1 cut(s) 277
PstNI CAGNNNCTG 1 cut(s) 249
PsyI GACNNNGTC 1 cut(s) 500
RsaI GTAC 1 cut(s) 555
RsaNI GTAC 1 cut(s) 554
RseI CAYNNNNRTG 1 cut(s) 101
SacI GAGCTC 1 cut(s) 261
SatI GCNGC 4 cut(s) 273, 453, 544, 549
Sau3AI GATC 3 cut(s) 307, 358, 439
Sau96I GGNCC 1 cut(s) 460
SchI GAGTC 2 cut(s) 15, 287
ScrFI CCNGG 1 cut(s) 302
SduI GDGCHC 1 cut(s) 261
SetI ASST 8 cut(s) 129, 233, 240, 261, 274, 411, 438, 504
SfcI CTRYAG 1 cut(s) 273
SinI GGWCC 1 cut(s) 460
SmiMI CAYNNNNRTG 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 425
SmoI CTYRAG 1 cut(s) 425
Sse9I AATT 1 cut(s) 581
SsiI CCGC 5 cut(s) 189, 453, 473, 543, 551
SspMI CTAG 2 cut(s) 50, 521
SstI GAGCTC 1 cut(s) 261
StyD4I CCNGG 1 cut(s) 300
StyI CCWWGG 1 cut(s) 349
TaaI ACNGT 2 cut(s) 172, 515
TaqI TCGA 3 cut(s) 60, 71, 411
TasI AATT 1 cut(s) 581
TauI GCSGC 2 cut(s) 455, 546
TfiI GAWTC 1 cut(s) 89
TscAI CASTG 2 cut(s) 103, 118
TseFI GTSAC 1 cut(s) 380
TseI GCWGC 2 cut(s) 272, 548
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 2 cut(s) 59, 527
TspGWI ACGGA 1 cut(s) 401
TspRI CASTG 2 cut(s) 103, 118
Tth111I GACNNNGTC 1 cut(s) 500
VpaK11BI GGWCC 1 cut(s) 460
XapI RAATTY 1 cut(s) 581
XspI CTAG 2 cut(s) 50, 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.