Rmu_sc0001837.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001837.1
OG0022877
Physical Location & Seq
Reverse (-)
10319 .. 12352
2034 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001837.1_g000003.1.cds

Sequence Viewer

Length: 639 bp
atggcaaaaatccccagcggggcggagctccattggatatccgcccctaatggggggagaattcggggacaaatggggaaaggggatggggatccccaatccccgctatctaagattggggatagggcggggatgctcgccgtcggagccgcagaggccgatggccttgactccttctcggttgatcaaggagaccaaatgcttgttgactttgccgaccaagaccatggagacaatctccatggtgggcgcgtcggtgacacggaggccgtcgtggaagttgacctcaatgttgaggcacttgagccagaggttgatctcggggccgccgccgtggaccaagatggggtggaggccgatgcaggcgaggaggacgaggtctctgacgacggtggcctggagggtctcgtccttcatggtgccgtacttgacgacgatcgttttacctcagaatttctggatgaaggtgagtgcgagtgcggtggacatttggggcggaagaaggtgagggtgttggggaggttgcggggtgttggggaaggagggaatgagatcaaagatggacaagggtgggttttagaagccaacattttgagtttgattctagggttgtttgggtcttctgatctctttgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

22.05

Weight (kDa)

4.12

Isoelectric Point (pI)

24.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022877)

Species Orthologous Gene IDs
rosa_laevigata RLG00000007356
rosa_multiflora Rmu_sc0001837.1_g000003 Rmu_ssc0000026.1_g000001
rosa_samantha Rh3AG165200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 419
AccII CGCG 1 cut(s) 252
AclWI GGATC 2 cut(s) 86, 99
AcsI RAATTY 2 cut(s) 60, 452
AfaI GTAC 1 cut(s) 426
AfiI CCNNNNNNNGG 5 cut(s) 19, 51, 52, 53, 346
AjnI CCWGG 1 cut(s) 396
AluBI AGCT 1 cut(s) 28
AluI AGCT 1 cut(s) 28
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 4 cut(s) 186, 225, 385, 410
AlwI GGATC 2 cut(s) 86, 99
Ama87I CYCGRG 1 cut(s) 320
AoxI GGCC 6 cut(s) 156, 163, 267, 324, 354, 394
ApoI RAATTY 2 cut(s) 60, 452
AspLEI GCGC 1 cut(s) 252
AspS9I GGNCC 2 cut(s) 324, 337
AsuHPI GGTGA 3 cut(s) 269, 479, 517
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 1 cut(s) 337
BamHI GGATCC 1 cut(s) 91
BanI GGYRCC 1 cut(s) 419
BanII GRGCYC 1 cut(s) 30
BbsI GAAGAC 1 cut(s) 612
Bbv12I GWGCWC 1 cut(s) 30
BccI CCATC 4 cut(s) 80, 155, 338, 554
BceAI ACGGC 4 cut(s) 125, 254, 317, 407
BciT130I CCWGG 1 cut(s) 398
BclI TGATCA 1 cut(s) 184
BcoDI GTCTC 4 cut(s) 186, 225, 385, 410
BfaI CTAG 1 cut(s) 605
BglI GCCNNNNNGGC 1 cut(s) 155
BisI GCNGC 3 cut(s) 150, 327, 330
BlsI GCNGC 3 cut(s) 151, 328, 331
Bme1390I CCNGG 1 cut(s) 398
Bme18I GGWCC 1 cut(s) 337
BmeT110I CYCGRG 1 cut(s) 320
BmgT120I GGNCC 2 cut(s) 324, 337
BmiI GGNNCC 4 cut(s) 93, 148, 325, 421
BmrFI CCNGG 1 cut(s) 398
BmsI GCATC 2 cut(s) 123, 349
BpiI GAAGAC 1 cut(s) 612
BplI GAGNNNNNCTC 2 cut(s) 222, 254
BpmI CTGGAG 1 cut(s) 419
BpuEI CTTGAG 1 cut(s) 323
BsaBI GATNNNNATC 1 cut(s) 90
BsaI GGTCTC 3 cut(s) 186, 385, 410
BsaJI CCNNGG 3 cut(s) 226, 241, 333
Bsc4I CCNNNNNNNGG 5 cut(s) 19, 51, 52, 53, 346
Bse8I GATNNNNATC 1 cut(s) 90
BseBI CCWGG 1 cut(s) 398
BseDI CCNNGG 3 cut(s) 226, 241, 333
BseGI GGATG 3 cut(s) 91, 138, 466
BseJI GATNNNNATC 1 cut(s) 90
BseLI CCNNNNNNNGG 5 cut(s) 19, 51, 52, 53, 346
BseMII CTCAG 1 cut(s) 462
BseRI GAGGAG 1 cut(s) 383
BseYI CCCAGC 1 cut(s) 14
Bsh1236I CGCG 1 cut(s) 252
Bsh1285I CGRYCG 1 cut(s) 439
BshFI GGCC 6 cut(s) 158, 165, 269, 326, 356, 396
BshNI GGYRCC 1 cut(s) 419
BsiEI CGRYCG 1 cut(s) 439
BsiHKAI GWGCWC 1 cut(s) 30
BsiHKCI CYCGRG 1 cut(s) 320
BslFI GGGAC 1 cut(s) 81
BslI CCNNNNNNNGG 5 cut(s) 19, 51, 52, 53, 346
BsmAI GTCTC 4 cut(s) 186, 225, 385, 410
BsmFI GGGAC 1 cut(s) 81
BsnI GGCC 6 cut(s) 158, 165, 269, 326, 356, 396
Bso31I GGTCTC 3 cut(s) 186, 385, 410
BsoBI CYCGRG 1 cut(s) 320
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 6 cut(s) 91, 184, 316, 436, 552, 625
Bsp19I CCATGG 2 cut(s) 226, 241
BspANI GGCC 6 cut(s) 158, 165, 269, 326, 356, 396
BspCNI CTCAG 1 cut(s) 461
BspFNI CGCG 1 cut(s) 252
BspLI GGNNCC 4 cut(s) 93, 148, 325, 421
BspPI GGATC 2 cut(s) 86, 99
BspT107I GGYRCC 1 cut(s) 419
BspTNI GGTCTC 3 cut(s) 186, 385, 410
BssECI CCNNGG 3 cut(s) 226, 241, 333
BssMI GATC 6 cut(s) 91, 184, 316, 436, 552, 625
BssT1I CCWWGG 2 cut(s) 226, 241
Bst2UI CCWGG 1 cut(s) 398
Bst4CI ACNGT 1 cut(s) 392
BstC8I GCNNGC 2 cut(s) 138, 364
BstDEI CTNAG 2 cut(s) 111, 448
BstDSI CCRYGG 3 cut(s) 226, 241, 333
BstF5I GGATG 3 cut(s) 91, 138, 466
BstFNI CGCG 1 cut(s) 252
BstHHI GCGC 1 cut(s) 252
BstKTI GATC 6 cut(s) 94, 187, 319, 439, 555, 628
BstMAI GTCTC 4 cut(s) 186, 225, 385, 410
BstMBI GATC 6 cut(s) 91, 184, 316, 436, 552, 625
BstMCI CGRYCG 1 cut(s) 439
BstMWI GCNNNNNNNGC 2 cut(s) 146, 155
BstNI CCWGG 1 cut(s) 398
BstSCI CCNGG 1 cut(s) 396
BstUI CGCG 1 cut(s) 252
BstV2I GAAGAC 1 cut(s) 612
BstX2I RGATCY 1 cut(s) 91
BstXI CCANNNNNNTGG 1 cut(s) 227
BstYI RGATCY 1 cut(s) 91
BsuRI GGCC 6 cut(s) 158, 165, 269, 326, 356, 396
BtgI CCRYGG 3 cut(s) 226, 241, 333
BtsCI GGATG 3 cut(s) 91, 138, 466
Cac8I GCNNGC 2 cut(s) 138, 364
CfoI GCGC 1 cut(s) 252
Cfr13I GGNCC 2 cut(s) 324, 337
CseI GACGC 1 cut(s) 241
Csp6I GTAC 1 cut(s) 425
CviAII CATG 3 cut(s) 227, 242, 416
CviQI GTAC 1 cut(s) 425
DdeI CTNAG 2 cut(s) 111, 448
DpnI GATC 6 cut(s) 93, 186, 318, 438, 554, 627
DpnII GATC 6 cut(s) 91, 184, 316, 436, 552, 625
EciI GGCGGA 3 cut(s) 31, 38, 511
Ecl136II GAGCTC 1 cut(s) 28
Eco130I CCWWGG 2 cut(s) 226, 241
Eco24I GRGCYC 1 cut(s) 30
Eco31I GGTCTC 3 cut(s) 186, 385, 410
Eco32I GATATC 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 337
Eco53kI GAGCTC 1 cut(s) 28
Eco88I CYCGRG 1 cut(s) 320
EcoICRI GAGCTC 1 cut(s) 28
EcoRI GAATTC 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 396
EcoRV GATATC 1 cut(s) 39
EcoT14I CCWWGG 2 cut(s) 226, 241
EcoT38I GRGCYC 1 cut(s) 30
ErhI CCWWGG 2 cut(s) 226, 241
FaeI CATG 3 cut(s) 230, 245, 419
FaiI YATR 3 cut(s) 228, 243, 417
FaqI GGGAC 1 cut(s) 81
FatI CATG 3 cut(s) 226, 241, 415
FauI CCCGC 4 cut(s) 11, 111, 121, 519
FbaI TGATCA 1 cut(s) 184
Fnu4HI GCNGC 3 cut(s) 150, 327, 330
FokI GGATG 3 cut(s) 98, 145, 473
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 3 cut(s) 150, 327, 330
FspBI CTAG 1 cut(s) 605
GlaI GCGC 1 cut(s) 251
GluI GCNGC 3 cut(s) 150, 327, 330
GsaI CCCAGC 1 cut(s) 18
GsuI CTGGAG 1 cut(s) 419
HaeIII GGCC 6 cut(s) 158, 165, 269, 326, 356, 396
HgaI GACGC 1 cut(s) 241
HhaI GCGC 1 cut(s) 252
Hin1II CATG 3 cut(s) 230, 245, 419
Hin6I GCGC 1 cut(s) 250
HinP1I GCGC 1 cut(s) 250
HincII GTYRAC 2 cut(s) 208, 283
HindII GTYRAC 2 cut(s) 208, 283
HinfI GANTC 2 cut(s) 170, 601
HphI GGTGA 3 cut(s) 269, 479, 517
Hpy166II GTNNAC 4 cut(s) 208, 283, 337, 485
Hpy188I TCNGA 4 cut(s) 146, 385, 451, 625
Hpy188III TCNNGA 1 cut(s) 458
Hpy8I GTNNAC 4 cut(s) 208, 283, 337, 485
Hpy99I CGWCG 5 cut(s) 146, 257, 275, 392, 437
HpyAV CCTTC 5 cut(s) 184, 422, 458, 496, 533
HpyCH4III ACNGT 1 cut(s) 392
HpyCH4V TGCA 1 cut(s) 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 155
HpyF3I CTNAG 2 cut(s) 111, 448
Hsp92II CATG 3 cut(s) 230, 245, 419
HspAI GCGC 1 cut(s) 250
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 6 cut(s) 91, 184, 316, 436, 552, 625
LmnI GCTCC 3 cut(s) 25, 33, 146
LpnPI CCDG 6 cut(s) 28, 321, 348, 383, 410, 443
LweI GCATC 2 cut(s) 123, 349
MaeI CTAG 1 cut(s) 605
MaeIII GTNAC 1 cut(s) 257
MalI GATC 6 cut(s) 93, 186, 318, 438, 554, 627
MboI GATC 6 cut(s) 91, 184, 316, 436, 552, 625
MboII GAAGA 2 cut(s) 511, 612
MflI RGATCY 1 cut(s) 91
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 2 cut(s) 60, 452
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 124
MspA1I CMGCKG 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 398
MvaI CCWGG 1 cut(s) 398
MvnI CGCG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 146, 155
NcoI CCATGG 2 cut(s) 226, 241
NdeII GATC 6 cut(s) 91, 184, 316, 436, 552, 625
NlaIII CATG 3 cut(s) 230, 245, 419
NlaIV GGNNCC 4 cut(s) 93, 148, 325, 421
NmuCI GTSAC 1 cut(s) 257
PfeI GAWTC 1 cut(s) 601
PflFI GACNNNGTC 1 cut(s) 377
PkrI GCNGC 3 cut(s) 151, 328, 331
Ple19I CGATCG 1 cut(s) 439
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
Psp124BI GAGCTC 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 396
PspFI CCCAGC 1 cut(s) 14
PspGI CCWGG 1 cut(s) 396
PspN4I GGNNCC 4 cut(s) 93, 148, 325, 421
PspPI GGNCC 2 cut(s) 324, 337
PsuI RGATCY 1 cut(s) 91
PsyI GACNNNGTC 1 cut(s) 377
PvuI CGATCG 1 cut(s) 439
RsaI GTAC 1 cut(s) 426
RsaNI GTAC 1 cut(s) 425
SacI GAGCTC 1 cut(s) 30
SatI GCNGC 3 cut(s) 150, 327, 330
Sau3AI GATC 6 cut(s) 91, 184, 316, 436, 552, 625
Sau96I GGNCC 2 cut(s) 324, 337
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 1 cut(s) 398
SduI GDGCHC 1 cut(s) 30
SetI ASST 8 cut(s) 30, 288, 315, 381, 449, 469, 507, 524
SfaNI GCATC 2 cut(s) 123, 349
SinI GGWCC 1 cut(s) 337
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 2 cut(s) 60, 452
SspMI CTAG 1 cut(s) 605
SstI GAGCTC 1 cut(s) 30
StyD4I CCNGG 1 cut(s) 396
StyI CCWWGG 2 cut(s) 226, 241
TaaI ACNGT 1 cut(s) 392
TasI AATT 2 cut(s) 60, 452
TauI GCSGC 3 cut(s) 152, 329, 332
TfiI GAWTC 1 cut(s) 601
TseFI GTSAC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 2 cut(s) 404, 477
TspGWI ACGGA 1 cut(s) 278
Tth111I GACNNNGTC 1 cut(s) 377
VpaK11BI GGWCC 1 cut(s) 337
XapI RAATTY 2 cut(s) 60, 452
XspI CTAG 1 cut(s) 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.