Rh3AG165200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0022877
Physical Location & Seq
Forward (+)
15314947 .. 15315225
279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG165200.1

Sequence Viewer

Length: 279 bp
ATGCTTGTTGACTTTGCCGGCCAAGACCATGGAGACGATCTCCATGGTGGGCGCGTCGGTGACACGGAGGCTGTCGTGGAAGTTGACCTCAATGTTGAGGCGCTTGAGCCAGAGGTTGATCTCGGGGCCGCCGCCGTGGACCAAGATGGGGCGGAGGCCGACGCAGGCGAGGAGGACGAGGTCTCTGACGACGGTGGCCTGGAGGGTCTCGTCCTTCATGGCGGCGCAGCCATACTTGACGACGATGGTTTTGCCTCGGAATTTCTGGATGAAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

9.35

Weight (kDa)

4.05

Isoelectric Point (pI)

16.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022877)

Species Orthologous Gene IDs
rosa_laevigata RLG00000007356
rosa_multiflora Rmu_sc0001837.1_g000003 Rmu_ssc0000026.1_g000001
rosa_samantha Rh3AG165200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 54
AciI CCGC 4 cut(s) 129, 132, 152, 222
AcoI YGGCCR 1 cut(s) 19
AcsI RAATTY 1 cut(s) 260
AfiI CCNNNNNNNGG 1 cut(s) 148
AjnI CCWGG 1 cut(s) 198
Alw26I GTCTC 3 cut(s) 27, 187, 212
Ama87I CYCGRG 1 cut(s) 122
AoxI GGCC 4 cut(s) 19, 126, 156, 196
ApeKI GCWGC 1 cut(s) 227
ApoI RAATTY 1 cut(s) 260
ArsI GACNNNNNNTTYG 2 cut(s) 233, 265
AspLEI GCGC 3 cut(s) 54, 103, 227
AspS9I GGNCC 2 cut(s) 126, 139
AsuHPI GGTGA 1 cut(s) 71
AvaI CYCGRG 1 cut(s) 122
AvaII GGWCC 1 cut(s) 139
BbvI GCAGC 1 cut(s) 239
BccI CCATC 2 cut(s) 140, 239
BceAI ACGGC 1 cut(s) 119
BcgI CGANNNNNNTGC 2 cut(s) 233, 267
BciT130I CCWGG 1 cut(s) 200
BcoDI GTCTC 3 cut(s) 27, 187, 212
BfoI RGCGCY 1 cut(s) 104
BisI GCNGC 4 cut(s) 129, 132, 223, 228
BlsI GCNGC 4 cut(s) 130, 133, 224, 229
Bme1390I CCNGG 1 cut(s) 200
Bme18I GGWCC 1 cut(s) 139
BmeT110I CYCGRG 1 cut(s) 122
BmgT120I GGNCC 2 cut(s) 126, 139
BmiI GGNNCC 1 cut(s) 127
BmrFI CCNGG 1 cut(s) 200
BplI GAGNNNNNCTC 2 cut(s) 24, 56
BpmI CTGGAG 1 cut(s) 221
BpuEI CTTGAG 1 cut(s) 125
BsaI GGTCTC 2 cut(s) 187, 212
BsaJI CCNNGG 4 cut(s) 28, 43, 135, 255
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse118I RCCGGY 1 cut(s) 17
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 4 cut(s) 28, 43, 135, 255
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 1 cut(s) 148
BseRI GAGGAG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 239
Bsh1236I CGCG 1 cut(s) 54
BshFI GGCC 4 cut(s) 21, 128, 158, 198
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 3 cut(s) 27, 187, 212
BsmBI CGTCTC 1 cut(s) 27
BsnI GGCC 4 cut(s) 21, 128, 158, 198
Bso31I GGTCTC 2 cut(s) 187, 212
BsoBI CYCGRG 1 cut(s) 122
Bsp143I GATC 2 cut(s) 37, 118
Bsp19I CCATGG 2 cut(s) 28, 43
BspACI CCGC 4 cut(s) 129, 132, 152, 222
BspANI GGCC 4 cut(s) 21, 128, 158, 198
BspFNI CGCG 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 127
BspTNI GGTCTC 2 cut(s) 187, 212
BsrFI RCCGGY 1 cut(s) 17
BssAI RCCGGY 1 cut(s) 17
BssECI CCNNGG 4 cut(s) 28, 43, 135, 255
BssMI GATC 2 cut(s) 37, 118
BssT1I CCWWGG 2 cut(s) 28, 43
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 194
BstC8I GCNNGC 2 cut(s) 19, 166
BstDSI CCRYGG 3 cut(s) 28, 43, 135
BstF5I GGATG 1 cut(s) 274
BstFNI CGCG 1 cut(s) 54
BstH2I RGCGCY 1 cut(s) 104
BstHHI GCGC 3 cut(s) 54, 103, 227
BstKTI GATC 2 cut(s) 40, 121
BstMAI GTCTC 3 cut(s) 27, 187, 212
BstMBI GATC 2 cut(s) 37, 118
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 198
BstUI CGCG 1 cut(s) 54
BstV1I GCAGC 1 cut(s) 239
BstXI CCANNNNNNTGG 1 cut(s) 29
BsuRI GGCC 4 cut(s) 21, 128, 158, 198
BtgI CCRYGG 3 cut(s) 28, 43, 135
BtsCI GGATG 1 cut(s) 274
Cac8I GCNNGC 2 cut(s) 19, 166
CfoI GCGC 3 cut(s) 54, 103, 227
Cfr10I RCCGGY 1 cut(s) 17
Cfr13I GGNCC 2 cut(s) 126, 139
CseI GACGC 2 cut(s) 43, 170
CviAII CATG 3 cut(s) 29, 44, 218
CviJI RGCY 7 cut(s) 21, 71, 109, 128, 158, 198, 230
CviKI_1 RGCY 7 cut(s) 21, 71, 109, 128, 158, 198, 230
DpnI GATC 2 cut(s) 39, 120
DpnII GATC 2 cut(s) 37, 118
EaeI YGGCCR 1 cut(s) 19
EciI GGCGGA 1 cut(s) 167
Eco130I CCWWGG 2 cut(s) 28, 43
Eco31I GGTCTC 2 cut(s) 187, 212
Eco47I GGWCC 1 cut(s) 139
Eco88I CYCGRG 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 198
EcoT14I CCWWGG 2 cut(s) 28, 43
ErhI CCWWGG 2 cut(s) 28, 43
Esp3I CGTCTC 1 cut(s) 27
FaeI CATG 3 cut(s) 32, 47, 221
FaiI YATR 4 cut(s) 30, 45, 219, 233
FatI CATG 3 cut(s) 28, 43, 217
Fnu4HI GCNGC 4 cut(s) 129, 132, 223, 228
Fsp4HI GCNGC 4 cut(s) 129, 132, 223, 228
GlaI GCGC 3 cut(s) 53, 102, 226
GluI GCNGC 4 cut(s) 129, 132, 223, 228
GsuI CTGGAG 1 cut(s) 221
HaeII RGCGCY 1 cut(s) 104
HaeIII GGCC 4 cut(s) 21, 128, 158, 198
HapII CCGG 1 cut(s) 18
HgaI GACGC 2 cut(s) 43, 170
HhaI GCGC 3 cut(s) 54, 103, 227
Hin1II CATG 3 cut(s) 32, 47, 221
Hin6I GCGC 3 cut(s) 52, 101, 225
HinP1I GCGC 3 cut(s) 52, 101, 225
HincII GTYRAC 2 cut(s) 10, 85
HindII GTYRAC 2 cut(s) 10, 85
HpaII CCGG 1 cut(s) 18
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 3 cut(s) 10, 85, 139
Hpy188I TCNGA 2 cut(s) 187, 259
Hpy188III TCNNGA 1 cut(s) 266
Hpy8I GTNNAC 3 cut(s) 10, 85, 139
Hpy99I CGWCG 4 cut(s) 59, 164, 194, 245
HpyAV CCTTC 2 cut(s) 224, 266
HpyCH4III ACNGT 1 cut(s) 194
Hsp92II CATG 3 cut(s) 32, 47, 221
HspAI GCGC 3 cut(s) 52, 101, 225
KroI GCCGGC 1 cut(s) 17
KroNI GCCGGC 1 cut(s) 19
Kzo9I GATC 2 cut(s) 37, 118
LpnPI CCDG 6 cut(s) 31, 123, 150, 185, 212, 251
Lsp1109I GCAGC 1 cut(s) 239
MaeIII GTNAC 1 cut(s) 59
MalI GATC 2 cut(s) 39, 120
MboI GATC 2 cut(s) 37, 118
MluCI AATT 1 cut(s) 260
MroNI GCCGGC 1 cut(s) 17
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 200
MvaI CCWGG 1 cut(s) 200
MvnI CGCG 1 cut(s) 54
NaeI GCCGGC 1 cut(s) 19
NcoI CCATGG 2 cut(s) 28, 43
NdeII GATC 2 cut(s) 37, 118
NgoMIV GCCGGC 1 cut(s) 17
NlaIII CATG 3 cut(s) 32, 47, 221
NlaIV GGNNCC 1 cut(s) 127
NmuCI GTSAC 1 cut(s) 59
PdiI GCCGGC 1 cut(s) 19
PflFI GACNNNGTC 1 cut(s) 179
PkrI GCNGC 4 cut(s) 130, 133, 224, 229
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 127
PspPI GGNCC 2 cut(s) 126, 139
PsyI GACNNNGTC 1 cut(s) 179
SatI GCNGC 4 cut(s) 129, 132, 223, 228
Sau3AI GATC 2 cut(s) 37, 118
Sau96I GGNCC 2 cut(s) 126, 139
ScrFI CCNGG 1 cut(s) 200
SetI ASST 3 cut(s) 90, 117, 183
SinI GGWCC 1 cut(s) 139
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 1 cut(s) 260
SsiI CCGC 4 cut(s) 129, 132, 152, 222
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 2 cut(s) 28, 43
TaaI ACNGT 1 cut(s) 194
TasI AATT 1 cut(s) 260
TauI GCSGC 3 cut(s) 131, 134, 225
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 1 cut(s) 227
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 206
TspGWI ACGGA 1 cut(s) 80
Tth111I GACNNNGTC 1 cut(s) 179
VpaK11BI GGWCC 1 cut(s) 139
XapI RAATTY 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.