RLG00000007812

Leucine-rich repeats, outliers

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0025236
Physical Location & Seq
Reverse (-)
21390642 .. 21392439
1798 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007812

Sequence Viewer

Length: 513 bp
ATGGGTGGTTGCACTCGAAGTAGTCGCAGAAAGCTTCGGCTTGTTTTTTCTGGCCGCATCTCGATTGGTGATGTGGTTGTGCTAATCAAGACCGACGGCATGGGTTCTGCATCGACGGTGGGTAGAGGGTTTGAGATGATCATCAATCACCTGCTGAAAGAAGCGATCAACTTCCCCGAAAACTCTTTCGAAATTTCTATTCCGACCGGAGATTCTAATTTGGGGGATATGTCATTGTCTGAATTAGGTGAAGGCTGTCCAAACCTCAAGGACATTGTGCTGTCACATTGCCGTCAAATAACAGATGTTGGTTTAAACCATCTTGTCAAAAACTGCACAATGCTTGCATCCTGTCACATGGTTTATTGCCAAGGTATAACTTCTGCTGGAGTAGCCACCGTGGTTTCAAGCTGTCCCAACATAAAGAAAGTCCTGGTTGAGAAGTGGAAGGTTAGCCAGAGGACCAACAGGAGGGCCGGCTCTATAATTTCTTATCTTTGTGTGGACCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like LRR_6

Protein Analysis

171

Amino Acids

18.39

Weight (kDa)

8.84

Isoelectric Point (pI)

37.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 72 - 144 3.2e-06 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025236)

Species Orthologous Gene IDs
rosa_laevigata RLG00000007812
rosa_roxburghii Rroxscaffold_5G00362320
rosa_samantha Rh2AG030000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 159
Acc36I ACCTGC 1 cut(s) 159
AciI CCGC 1 cut(s) 55
AcoI YGGCCR 1 cut(s) 52
AcsI RAATTY 1 cut(s) 192
AfiI CCNNNNNNNGG 1 cut(s) 471
AgsI TTSAA 1 cut(s) 408
AjnI CCWGG 1 cut(s) 432
AluBI AGCT 2 cut(s) 34, 411
AluI AGCT 2 cut(s) 34, 411
AoxI GGCC 2 cut(s) 52, 474
ApoI RAATTY 1 cut(s) 192
AspS9I GGNCC 3 cut(s) 462, 474, 505
AsuHPI GGTGA 3 cut(s) 80, 140, 260
AsuII TTCGAA 1 cut(s) 189
AvaII GGWCC 2 cut(s) 462, 505
BccI CCATC 1 cut(s) 327
BceAI ACGGC 2 cut(s) 112, 276
BciT130I CCWGG 1 cut(s) 434
BclI TGATCA 1 cut(s) 138
BfuAI ACCTGC 1 cut(s) 159
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 434
Bme18I GGWCC 2 cut(s) 462, 505
BmgT120I GGNCC 3 cut(s) 462, 474, 505
BmrFI CCNGG 1 cut(s) 434
BmsI GCATC 3 cut(s) 66, 119, 356
BpmI CTGGAG 1 cut(s) 408
Bpu14I TTCGAA 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 251
BsaBI GATNNNNATC 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 370, 399
BsaWI WCCGGW 1 cut(s) 206
Bsc4I CCNNNNNNNGG 1 cut(s) 471
Bse118I RCCGGY 1 cut(s) 476
Bse3DI GCAATG 1 cut(s) 286
Bse8I GATNNNNATC 1 cut(s) 140
BseBI CCWGG 1 cut(s) 434
BseDI CCNNGG 2 cut(s) 370, 399
BseGI GGATG 1 cut(s) 347
BseJI GATNNNNATC 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 471
BseMI GCAATG 1 cut(s) 286
BsgI GTGCAG 1 cut(s) 319
Bsh1285I CGRYCG 1 cut(s) 207
BshFI GGCC 2 cut(s) 54, 476
BsiEI CGRYCG 1 cut(s) 207
BsiSI CCGG 2 cut(s) 207, 477
BslFI GGGAC 1 cut(s) 399
BslI CCNNNNNNNGG 1 cut(s) 471
BsmFI GGGAC 1 cut(s) 399
BsnI GGCC 2 cut(s) 54, 476
Bsp119I TTCGAA 1 cut(s) 189
Bsp143I GATC 2 cut(s) 138, 165
BspACI CCGC 1 cut(s) 55
BspANI GGCC 2 cut(s) 54, 476
BspMI ACCTGC 1 cut(s) 159
BspT104I TTCGAA 1 cut(s) 189
BsrDI GCAATG 1 cut(s) 286
BsrFI RCCGGY 1 cut(s) 476
BssAI RCCGGY 1 cut(s) 476
BssECI CCNNGG 2 cut(s) 370, 399
BssMI GATC 2 cut(s) 138, 165
BssT1I CCWWGG 1 cut(s) 370
Bst2UI CCWGG 1 cut(s) 434
Bst4CI ACNGT 2 cut(s) 118, 400
BstBI TTCGAA 1 cut(s) 189
BstC8I GCNNGC 2 cut(s) 345, 478
BstDSI CCRYGG 1 cut(s) 399
BstF5I GGATG 1 cut(s) 347
BstKTI GATC 2 cut(s) 141, 168
BstMBI GATC 2 cut(s) 138, 165
BstMCI CGRYCG 1 cut(s) 207
BstMWI GCNNNNNNNGC 1 cut(s) 392
BstNI CCWGG 1 cut(s) 434
BstSCI CCNGG 1 cut(s) 432
BsuRI GGCC 2 cut(s) 54, 476
BtgI CCRYGG 1 cut(s) 399
BtsCI GGATG 1 cut(s) 347
BveI ACCTGC 1 cut(s) 159
Cac8I GCNNGC 2 cut(s) 345, 478
Cfr10I RCCGGY 1 cut(s) 476
Cfr13I GGNCC 3 cut(s) 462, 474, 505
CviAII CATG 2 cut(s) 100, 358
CviJI RGCY 9 cut(s) 34, 40, 54, 255, 395, 411, 456, 476, 480
CviKI_1 RGCY 9 cut(s) 34, 40, 54, 255, 395, 411, 456, 476, 480
DpnI GATC 2 cut(s) 140, 167
DpnII GATC 2 cut(s) 138, 165
DraI TTTAAA 1 cut(s) 315
EaeI YGGCCR 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 370
Eco47I GGWCC 2 cut(s) 462, 505
EcoRII CCWGG 1 cut(s) 432
EcoT14I CCWWGG 1 cut(s) 370
ErhI CCWWGG 1 cut(s) 370
FaeI CATG 2 cut(s) 103, 361
FaiI YATR 6 cut(s) 101, 230, 359, 377, 422, 485
FaqI GGGAC 1 cut(s) 399
FatI CATG 2 cut(s) 99, 357
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 1 cut(s) 55
FokI GGATG 1 cut(s) 334
Fsp4HI GCNGC 1 cut(s) 55
GluI GCNGC 1 cut(s) 55
GsuI CTGGAG 1 cut(s) 408
HaeIII GGCC 2 cut(s) 54, 476
HapII CCGG 2 cut(s) 207, 477
Hin1II CATG 2 cut(s) 103, 361
HindIII AAGCTT 1 cut(s) 32
HinfI GANTC 1 cut(s) 212
HpaII CCGG 2 cut(s) 207, 477
HphI GGTGA 3 cut(s) 80, 140, 260
Hpy166II GTNNAC 1 cut(s) 505
Hpy188I TCNGA 2 cut(s) 204, 241
Hpy188III TCNNGA 2 cut(s) 61, 88
Hpy8I GTNNAC 1 cut(s) 505
Hpy99I CGWCG 2 cut(s) 98, 118
HpyAV CCTTC 2 cut(s) 245, 442
HpyCH4III ACNGT 2 cut(s) 118, 400
HpyCH4V TGCA 4 cut(s) 12, 110, 336, 347
HpyF10VI GCNNNNNNNGC 1 cut(s) 392
Hsp92II CATG 2 cut(s) 103, 361
KroI GCCGGC 1 cut(s) 476
KroNI GCCGGC 1 cut(s) 478
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 2 cut(s) 138, 165
LweI GCATC 3 cut(s) 66, 119, 356
MaeIII GTNAC 2 cut(s) 282, 353
MalI GATC 2 cut(s) 140, 167
MboI GATC 2 cut(s) 138, 165
MluCI AATT 4 cut(s) 192, 217, 242, 486
MmeI TCCRAC 1 cut(s) 227
MnlI CCTC 4 cut(s) 119, 275, 453, 465
MroNI GCCGGC 1 cut(s) 476
MseI TTAA 1 cut(s) 314
MspI CCGG 2 cut(s) 207, 477
MspR9I CCNGG 1 cut(s) 434
MssI GTTTAAAC 1 cut(s) 315
MvaI CCWGG 1 cut(s) 434
MwoI GCNNNNNNNGC 1 cut(s) 392
NaeI GCCGGC 1 cut(s) 478
NdeII GATC 2 cut(s) 138, 165
NgoMIV GCCGGC 1 cut(s) 476
NlaIII CATG 2 cut(s) 103, 361
NmuCI GTSAC 2 cut(s) 282, 353
NspV TTCGAA 1 cut(s) 189
PaqCI CACCTGC 1 cut(s) 159
PdiI GCCGGC 1 cut(s) 478
PfeI GAWTC 1 cut(s) 212
PkrI GCNGC 1 cut(s) 56
PmeI GTTTAAAC 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 432
PspGI CCWGG 1 cut(s) 432
PspPI GGNCC 3 cut(s) 462, 474, 505
SaqAI TTAA 1 cut(s) 314
SatI GCNGC 1 cut(s) 55
Sau3AI GATC 2 cut(s) 138, 165
Sau96I GGNCC 3 cut(s) 462, 474, 505
ScrFI CCNGG 1 cut(s) 434
SetI ASST 8 cut(s) 36, 153, 250, 267, 376, 413, 453, 510
SfaNI GCATC 3 cut(s) 66, 119, 356
SfuI TTCGAA 1 cut(s) 189
SinI GGWCC 2 cut(s) 462, 505
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 4 cut(s) 192, 217, 242, 486
SsiI CCGC 1 cut(s) 55
StyD4I CCNGG 1 cut(s) 432
StyI CCWWGG 1 cut(s) 370
TaaI ACNGT 2 cut(s) 118, 400
TaqI TCGA 4 cut(s) 16, 62, 113, 189
TaqII GACCGA 1 cut(s) 107
TasI AATT 4 cut(s) 192, 217, 242, 486
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 1 cut(s) 314
Tru9I TTAA 1 cut(s) 314
TseFI GTSAC 2 cut(s) 282, 353
Tsp45I GTSAC 2 cut(s) 282, 353
VpaK11BI GGWCC 2 cut(s) 462, 505
XapI RAATTY 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.