Rroxscaffold_5G00362320

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0025236
Physical Location & Seq
Forward (+)
43273268 .. 43274779
1512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00362320.1

Sequence Viewer

Length: 432 bp
ATGGCTCAATGGCGAAGGCGCAGCGCAGCGAAGGCGAAGGCGAAGGTGGAGGCGGATTTGACAATTGAGAGGTTGGAGAGCCGAGGGGGTGTGATCTCGGAGACGGAGAGTGACTTGATTTTGGCGGAGGAGCTAAATTTGGGAGATATGTCATTGTCTGAATTAGGTGAAGGCTGTCCAAACCTCAAGGACATTGTGCTGTCACATTGCCGTCAAATAACAGATGTTGGTTTAAACCATCTTGTCAAAAACTGCACAATGCTTGCATCATGTCACATGGTTCATTGCCAAGGTATAACTTCTGCTGGAGTAGCCACCGTGGTTTCAAGCTGTCCCAACATAAAGAAAGTCCTGGTTGAGAAGTGGAAGGTTAGCCAGAGGACCAAAAGGAGGGCTGGCTTTATAATTCCTTATCTTTGTGTGGACCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like LRR_6

Protein Analysis

143

Amino Acids

15.71

Weight (kDa)

8.51

Isoelectric Point (pI)

56.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025236)

Species Orthologous Gene IDs
rosa_laevigata RLG00000007812
rosa_roxburghii Rroxscaffold_5G00362320
rosa_samantha Rh2AG030000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 404
AciI CCGC 2 cut(s) 53, 125
AcsI RAATTY 1 cut(s) 136
AfiI CCNNNNNNNGG 1 cut(s) 390
AgsI TTSAA 1 cut(s) 327
AjnI CCWGG 1 cut(s) 351
AluBI AGCT 2 cut(s) 133, 330
AluI AGCT 2 cut(s) 133, 330
Alw26I GTCTC 1 cut(s) 95
ApeKI GCWGC 2 cut(s) 21, 26
ApoI RAATTY 1 cut(s) 136
AspLEI GCGC 2 cut(s) 21, 26
AspS9I GGNCC 2 cut(s) 381, 424
AsuHPI GGTGA 1 cut(s) 179
AvaII GGWCC 2 cut(s) 381, 424
BbvI GCAGC 2 cut(s) 33, 38
BccI CCATC 1 cut(s) 246
BceAI ACGGC 1 cut(s) 195
BciT130I CCWGG 1 cut(s) 353
BcoDI GTCTC 1 cut(s) 95
BisI GCNGC 2 cut(s) 22, 27
BlsI GCNGC 2 cut(s) 23, 28
Bme1390I CCNGG 1 cut(s) 353
Bme18I GGWCC 2 cut(s) 381, 424
BmgT120I GGNCC 2 cut(s) 381, 424
BmrFI CCNGG 1 cut(s) 353
BmsI GCATC 1 cut(s) 275
BpmI CTGGAG 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 170
BsaJI CCNNGG 3 cut(s) 82, 289, 318
Bsc4I CCNNNNNNNGG 1 cut(s) 390
Bse3DI GCAATG 2 cut(s) 205, 283
BseBI CCWGG 1 cut(s) 353
BseDI CCNNGG 3 cut(s) 82, 289, 318
BseLI CCNNNNNNNGG 1 cut(s) 390
BseMI GCAATG 2 cut(s) 205, 283
BseRI GAGGAG 1 cut(s) 143
BseXI GCAGC 2 cut(s) 33, 38
BsgI GTGCAG 1 cut(s) 238
BslFI GGGAC 1 cut(s) 318
BslI CCNNNNNNNGG 1 cut(s) 390
BsmAI GTCTC 1 cut(s) 95
BsmBI CGTCTC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 318
Bsp143I GATC 1 cut(s) 93
BspACI CCGC 2 cut(s) 53, 125
BsrDI GCAATG 2 cut(s) 205, 283
BssECI CCNNGG 3 cut(s) 82, 289, 318
BssMI GATC 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 289
Bst2UI CCWGG 1 cut(s) 353
Bst4CI ACNGT 1 cut(s) 319
BstC8I GCNNGC 2 cut(s) 264, 397
BstDSI CCRYGG 1 cut(s) 318
BstHHI GCGC 2 cut(s) 21, 26
BstKTI GATC 1 cut(s) 96
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 1 cut(s) 93
BstMWI GCNNNNNNNGC 2 cut(s) 32, 311
BstNI CCWGG 1 cut(s) 353
BstSCI CCNGG 1 cut(s) 351
BstV1I GCAGC 2 cut(s) 33, 38
BtgI CCRYGG 1 cut(s) 318
Cac8I GCNNGC 2 cut(s) 264, 397
CfoI GCGC 2 cut(s) 21, 26
Cfr13I GGNCC 2 cut(s) 381, 424
CviAII CATG 2 cut(s) 270, 277
CviJI RGCY 9 cut(s) 5, 81, 133, 174, 314, 330, 375, 395, 399
CviKI_1 RGCY 9 cut(s) 5, 81, 133, 174, 314, 330, 375, 395, 399
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
DraI TTTAAA 1 cut(s) 234
EciI GGCGGA 2 cut(s) 68, 140
Eco130I CCWWGG 1 cut(s) 289
Eco47I GGWCC 2 cut(s) 381, 424
EcoRII CCWGG 1 cut(s) 351
EcoT14I CCWWGG 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 289
Esp3I CGTCTC 1 cut(s) 95
FaeI CATG 2 cut(s) 273, 280
FaiI YATR 6 cut(s) 149, 271, 278, 296, 341, 404
FaqI GGGAC 1 cut(s) 318
FatI CATG 2 cut(s) 269, 276
Fnu4HI GCNGC 2 cut(s) 22, 27
Fsp4HI GCNGC 2 cut(s) 22, 27
GlaI GCGC 2 cut(s) 20, 25
GluI GCNGC 2 cut(s) 22, 27
GsuI CTGGAG 1 cut(s) 327
HhaI GCGC 2 cut(s) 21, 26
Hin1II CATG 2 cut(s) 273, 280
Hin6I GCGC 2 cut(s) 19, 24
HinP1I GCGC 2 cut(s) 19, 24
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 1 cut(s) 424
Hpy188I TCNGA 2 cut(s) 100, 160
Hpy8I GTNNAC 1 cut(s) 424
HpyAV CCTTC 6 cut(s) 9, 25, 31, 37, 164, 361
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4V TGCA 2 cut(s) 255, 266
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 311
Hsp92II CATG 2 cut(s) 273, 280
HspAI GCGC 2 cut(s) 19, 24
Kzo9I GATC 1 cut(s) 93
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 5 cut(s) 291, 338, 365, 381, 389
Lsp1109I GCAGC 2 cut(s) 33, 38
LweI GCATC 1 cut(s) 275
MaeIII GTNAC 3 cut(s) 110, 201, 272
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MfeI CAATTG 1 cut(s) 63
MluCI AATT 4 cut(s) 63, 136, 161, 405
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 7 cut(s) 43, 63, 77, 121, 194, 372, 384
MseI TTAA 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 353
MssI GTTTAAAC 1 cut(s) 234
MteI GCGCNGCGC 1 cut(s) 22
MunI CAATTG 1 cut(s) 63
MvaI CCWGG 1 cut(s) 353
MwoI GCNNNNNNNGC 2 cut(s) 32, 311
NdeII GATC 1 cut(s) 93
NlaIII CATG 2 cut(s) 273, 280
NmeAIII GCCGAG 1 cut(s) 107
NmuCI GTSAC 3 cut(s) 110, 201, 272
PkrI GCNGC 2 cut(s) 23, 28
PmeI GTTTAAAC 1 cut(s) 234
PsiI TTATAA 1 cut(s) 404
Psp6I CCWGG 1 cut(s) 351
PspGI CCWGG 1 cut(s) 351
PspPI GGNCC 2 cut(s) 381, 424
SaqAI TTAA 1 cut(s) 233
SatI GCNGC 2 cut(s) 22, 27
Sau3AI GATC 1 cut(s) 93
Sau96I GGNCC 2 cut(s) 381, 424
ScrFI CCNGG 1 cut(s) 353
SetI ASST 9 cut(s) 48, 74, 135, 169, 186, 295, 332, 372, 429
SfaNI GCATC 1 cut(s) 275
SinI GGWCC 2 cut(s) 381, 424
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 4 cut(s) 63, 136, 161, 405
SsiI CCGC 2 cut(s) 53, 125
StyD4I CCNGG 1 cut(s) 351
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 1 cut(s) 319
TasI AATT 4 cut(s) 63, 136, 161, 405
Tru1I TTAA 1 cut(s) 233
Tru9I TTAA 1 cut(s) 233
TseFI GTSAC 3 cut(s) 110, 201, 272
TseI GCWGC 2 cut(s) 21, 26
Tsp45I GTSAC 3 cut(s) 110, 201, 272
TspDTI ATGAA 1 cut(s) 272
TspGWI ACGGA 1 cut(s) 119
VpaK11BI GGWCC 2 cut(s) 381, 424
XapI RAATTY 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.