Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0021527

Physical Location & Seq

Genomic Coordinates Reverse (-)

23839388 .. 23839981

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007981

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAGCTCTGAGTTGATGACTTCCGGGTCGGACCAGAGGGGCTTCGGGTCTTTTAGATTACCGGCCCTCGCCATTACCGCCTCAATCGTCGTCTTCTTATTCTCCCTCACTTTCATCGAATGGAGTTTCTATGGCCTCGAGTTCAGCGAAGTGCTTTATCCCAACCGACAGTGCGTGGAAGAGGCCTTCCGCCACACCGAGTCTAACTCACTCACTGTTCTCGTCTCCGACTACTTCCGCCACAGCGAAGATGCCAACTATCTCTGCCGCCTCTTCAACGACCTCAAGCAGCAGCTCAATAGCCTTCTCCGAGCCTCCCGCTCCAAAATTCGCCGCATTCACCGAGCCCATGTTGCATCCACTATATGCCTCATTCGAGCTGCCATTGGAGCAGTCGTTTCTGCGGCCAAGACTAAAGGAAAAGCAATAAGCATCGACCTCGGCAGCTCTCTCTCCTTCTTCACCCACTCAATCTTCCTTACTTTTGTTTATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

166

Amino Acids

18.55

Weight (kDa)

9.15

Isoelectric Point (pI)

42.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021527)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007981
rosa_multiflora	Rmu_sc0003722.1_g000013 Rmu_sc0005277.1_g000017
rosa_roxburghii	Rroxscaffold_1G00071120
rosa_samantha	Rh4BG202000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	25
AccBSI	CCGCTC	1 cut(s)	321
AciI	CCGC	7 cut(s)	78, 190, 238, 268, 319, 334, 404
AcoI	YGGCCR	1 cut(s)	405
AcsI	RAATTY	1 cut(s)	327
AgsI	TTSAA	1 cut(s)	277
AluBI	AGCT	4 cut(s)	6, 295, 380, 447
AluI	AGCT	4 cut(s)	6, 295, 380, 447
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	229
Ama87I	CYCGRG	1 cut(s)	137
AoxI	GGCC	4 cut(s)	63, 133, 183, 405
ApeKI	GCWGC	4 cut(s)	289, 292, 380, 444
ApoI	RAATTY	1 cut(s)	327
AspS9I	GGNCC	2 cut(s)	31, 64
AsuC2I	CCSGG	1 cut(s)	25
AsuHPI	GGTGA	2 cut(s)	332, 454
AvaI	CYCGRG	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	31
BanII	GRGCYC	2 cut(s)	8, 349
BbsI	GAAGAC	1 cut(s)	85
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	4 cut(s)	301, 304, 367, 456
BcgI	CGANNNNNNTGC	2 cut(s)	421, 455
BcnI	CCSGG	1 cut(s)	25
BcoDI	GTCTC	1 cut(s)	229
BisI	GCNGC	7 cut(s)	268, 290, 293, 334, 381, 405, 445
BlsI	GCNGC	7 cut(s)	269, 291, 294, 335, 382, 406, 446
Bme1390I	CCNGG	1 cut(s)	25
Bme18I	GGWCC	1 cut(s)	31
BmeT110I	CYCGRG	1 cut(s)	137
BmgT120I	GGNCC	2 cut(s)	31, 64
BmrFI	CCNGG	1 cut(s)	25
BmsI	GCATC	3 cut(s)	241, 365, 441
BpiI	GAAGAC	1 cut(s)	85
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
BpuEI	CTTGAG	1 cut(s)	269
BpuMI	CCSGG	1 cut(s)	25
BsaJI	CCNNGG	1 cut(s)	439
BsaXI	ACNNNNNCTCC	2 cut(s)	381, 411
Bse118I	RCCGGY	1 cut(s)	61
BseDI	CCNNGG	1 cut(s)	439
BseGI	GGATG	1 cut(s)	356
BseXI	GCAGC	4 cut(s)	301, 304, 367, 456
BshFI	GGCC	4 cut(s)	65, 135, 185, 407
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	2 cut(s)	24, 62
BsmAI	GTCTC	1 cut(s)	229
BsmBI	CGTCTC	1 cut(s)	229
BsmI	GAATGC	1 cut(s)	336
BsnI	GGCC	4 cut(s)	65, 135, 185, 407
BsoBI	CYCGRG	1 cut(s)	137
Bsp1286I	GDGCHC	2 cut(s)	8, 349
BspACI	CCGC	7 cut(s)	78, 190, 238, 268, 319, 334, 404
BspANI	GGCC	4 cut(s)	65, 135, 185, 407
BsrBI	CCGCTC	1 cut(s)	321
BsrFI	RCCGGY	1 cut(s)	61
BssAI	RCCGGY	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	439
Bst4CI	ACNGT	2 cut(s)	171, 217
Bst6I	CTCTTC	2 cut(s)	174, 278
BstDEI	CTNAG	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	356
BstMAI	GTCTC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 353, 389
BstSCI	CCNGG	1 cut(s)	23
BstV1I	GCAGC	4 cut(s)	301, 304, 367, 456
BstV2I	GAAGAC	1 cut(s)	85
BsuRI	GGCC	4 cut(s)	65, 135, 185, 407
BtsCI	GGATG	1 cut(s)	356
BtsIMutI	CAGTG	2 cut(s)	176, 213
Cfr10I	RCCGGY	1 cut(s)	61
Cfr13I	GGNCC	2 cut(s)	31, 64
CviAII	CATG	1 cut(s)	350
DdeI	CTNAG	1 cut(s)	9
DrdI	GACNNNNNNGTC	1 cut(s)	25
DseDI	GACNNNNNNGTC	1 cut(s)	25
EaeI	YGGCCR	1 cut(s)	405
Eam1104I	CTCTTC	2 cut(s)	174, 278
EarI	CTCTTC	2 cut(s)	174, 278
EciI	GGCGGA	2 cut(s)	179, 227
Ecl136II	GAGCTC	1 cut(s)	6
Eco147I	AGGCCT	1 cut(s)	185
Eco24I	GRGCYC	2 cut(s)	8, 349
Eco47I	GGWCC	1 cut(s)	31
Eco53kI	GAGCTC	1 cut(s)	6
Eco88I	CYCGRG	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	8, 349
Esp3I	CGTCTC	1 cut(s)	229
FaeI	CATG	1 cut(s)	353
FaiI	YATR	5 cut(s)	132, 351, 365, 367, 492
FatI	CATG	1 cut(s)	349
FauI	CCCGC	1 cut(s)	326
Fnu4HI	GCNGC	7 cut(s)	268, 290, 293, 334, 381, 405, 445
FokI	GGATG	1 cut(s)	343
FriOI	GRGCYC	2 cut(s)	8, 349
Fsp4HI	GCNGC	7 cut(s)	268, 290, 293, 334, 381, 405, 445
GluI	GCNGC	7 cut(s)	268, 290, 293, 334, 381, 405, 445
HaeIII	GGCC	4 cut(s)	65, 135, 185, 407
HapII	CCGG	2 cut(s)	24, 62
Hin1II	CATG	1 cut(s)	353
HinfI	GANTC	1 cut(s)	200
HpaII	CCGG	2 cut(s)	24, 62
HphI	GGTGA	2 cut(s)	332, 454
Hpy188I	TCNGA	4 cut(s)	10, 31, 229, 311
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	3 cut(s)	196, 314, 466
HpyCH4III	ACNGT	2 cut(s)	171, 217
HpyCH4V	TGCA	1 cut(s)	356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 353, 389
HpyF3I	CTNAG	1 cut(s)	9
Hsp92II	CATG	1 cut(s)	353
LmnI	GCTCC	2 cut(s)	326, 389
LpnPI	CCDG	3 cut(s)	37, 47, 75
Lsp1109I	GCAGC	4 cut(s)	301, 304, 367, 456
LweI	GCATC	3 cut(s)	241, 365, 441
MbiI	CCGCTC	1 cut(s)	321
MboII	GAAGA	6 cut(s)	85, 191, 260, 265, 451, 466
MhlI	GDGCHC	2 cut(s)	8, 349
MluCI	AATT	1 cut(s)	327
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	2 cut(s)	9, 252
MspI	CCGG	2 cut(s)	24, 62
MspR9I	CCNGG	1 cut(s)	25
Mva1269I	GAATGC	1 cut(s)	336
MwoI	GCNNNNNNNGC	3 cut(s)	77, 353, 389
NciI	CCSGG	1 cut(s)	25
NlaIII	CATG	1 cut(s)	353
NmeAIII	GCCGAG	1 cut(s)	420
PaeR7I	CTCGAG	1 cut(s)	137
PceI	AGGCCT	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PctI	GAATGC	1 cut(s)	336
PkrI	GCNGC	7 cut(s)	269, 291, 294, 335, 382, 406, 446
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
Psp124BI	GAGCTC	1 cut(s)	8
PspPI	GGNCC	2 cut(s)	31, 64
PspXI	VCTCGAGB	1 cut(s)	137
SacI	GAGCTC	1 cut(s)	8
SatI	GCNGC	7 cut(s)	268, 290, 293, 334, 381, 405, 445
Sau96I	GGNCC	2 cut(s)	31, 64
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	25
SduI	GDGCHC	2 cut(s)	8, 349
SetI	ASST	6 cut(s)	8, 285, 297, 382, 441, 449
SfaNI	GCATC	3 cut(s)	241, 365, 441
Sfr274I	CTCGAG	1 cut(s)	137
SinI	GGWCC	1 cut(s)	31
SlaI	CTCGAG	1 cut(s)	137
SmlI	CTYRAG	2 cut(s)	137, 284
SmoI	CTYRAG	2 cut(s)	137, 284
Sse9I	AATT	1 cut(s)	327
SseBI	AGGCCT	1 cut(s)	185
SsiI	CCGC	7 cut(s)	78, 190, 238, 268, 319, 334, 404
SstI	GAGCTC	1 cut(s)	8
StuI	AGGCCT	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	23
TaaI	ACNGT	2 cut(s)	171, 217
TaqI	TCGA	4 cut(s)	117, 138, 376, 435
TasI	AATT	1 cut(s)	327
TauI	GCSGC	3 cut(s)	270, 336, 407
TscAI	CASTG	2 cut(s)	176, 220
TseI	GCWGC	4 cut(s)	289, 292, 380, 444
TspDTI	ATGAA	1 cut(s)	103
TspRI	CASTG	2 cut(s)	176, 220
VpaK11BI	GGWCC	1 cut(s)	31
XapI	RAATTY	1 cut(s)	327
XhoI	CTCGAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.