Rroxscaffold_1G00071120

UPF0496 protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
92026657 .. 92027095
439 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00071120.1

Sequence Viewer

Length: 216 bp
ATGTTCTTCCAATTCGACAGCCACAACAACCCTTTCCCTTCCCCCGACTCCCACAACTTCGATGACAAGCACCACCTTTTCAATGACCTCAAGCAGCAGCTCAATCGCTGTCTCCCCGCCTCCCACTCTAAAATTTGCCACATGTTCCTCCAATTTGGTTGGGTTGTTCTATGTTTTCTGAATTGGATTTTGGGTGTCTTCTGTTTTGGGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

71

Amino Acids

8.41

Weight (kDa)

6.55

Isoelectric Point (pI)

55.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021527)

Species Orthologous Gene IDs
rosa_laevigata RLG00000007981
rosa_multiflora Rmu_sc0003722.1_g000013 Rmu_sc0005277.1_g000017
rosa_roxburghii Rroxscaffold_1G00071120
rosa_samantha Rh4BG202000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 117
AcsI RAATTY 1 cut(s) 132
AflIII ACRYGT 1 cut(s) 141
AgsI TTSAA 1 cut(s) 82
AjuI GAANNNNNNNTTGG 2 cut(s) 173, 205
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
Alw26I GTCTC 1 cut(s) 116
ApeKI GCWGC 2 cut(s) 94, 97
ApoI RAATTY 1 cut(s) 132
BbsI GAAGAC 1 cut(s) 190
BbvI GCAGC 2 cut(s) 106, 109
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BcoDI GTCTC 1 cut(s) 116
BisI GCNGC 2 cut(s) 95, 98
BlsI GCNGC 2 cut(s) 96, 99
BpiI GAAGAC 1 cut(s) 190
BpuEI CTTGAG 1 cut(s) 74
BseXI GCAGC 2 cut(s) 106, 109
BsmAI GTCTC 1 cut(s) 116
BspACI CCGC 1 cut(s) 117
BstMAI GTCTC 1 cut(s) 116
BstNSI RCATGY 1 cut(s) 145
BstV1I GCAGC 2 cut(s) 106, 109
BstV2I GAAGAC 1 cut(s) 190
CviAII CATG 1 cut(s) 142
CviJI RGCY 2 cut(s) 21, 100
CviKI_1 RGCY 2 cut(s) 21, 100
FaeI CATG 1 cut(s) 145
FaiI YATR 2 cut(s) 143, 172
FatI CATG 1 cut(s) 141
FauI CCCGC 1 cut(s) 124
Fnu4HI GCNGC 2 cut(s) 95, 98
Fsp4HI GCNGC 2 cut(s) 95, 98
GluI GCNGC 2 cut(s) 95, 98
Hin1II CATG 1 cut(s) 145
HinfI GANTC 1 cut(s) 47
Hpy188I TCNGA 1 cut(s) 180
HpyAV CCTTC 1 cut(s) 48
Hsp92II CATG 1 cut(s) 145
Lsp1109I GCAGC 2 cut(s) 106, 109
MboII GAAGA 1 cut(s) 190
MluCI AATT 4 cut(s) 11, 132, 152, 181
MlyI GAGTC 1 cut(s) 41
MnlI CCTC 3 cut(s) 98, 130, 158
NlaIII CATG 1 cut(s) 145
NspI RCATGY 1 cut(s) 145
PciI ACATGT 1 cut(s) 141
PkrI GCNGC 2 cut(s) 96, 99
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
PscI ACATGT 1 cut(s) 141
SatI GCNGC 2 cut(s) 95, 98
SchI GAGTC 1 cut(s) 41
SetI ASST 3 cut(s) 78, 90, 102
SgeI CNNG 5 cut(s) 56, 79, 103, 128, 154
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 4 cut(s) 11, 132, 152, 181
SsiI CCGC 1 cut(s) 117
TaqI TCGA 2 cut(s) 15, 60
TasI AATT 4 cut(s) 11, 132, 152, 181
TseI GCWGC 2 cut(s) 94, 97
XapI RAATTY 1 cut(s) 132
XceI RCATGY 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.