Rmu_sc0005277.1_g000017

UPF0496 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005277.1
OG0021527
Physical Location & Seq
Reverse (-)
52578 .. 56773
4196 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005277.1_g000017.1.cds

Sequence Viewer

Length: 897 bp
atgaccactagggcttgcaccaccatctctgcgccatacattgggattccacggcccataccccgaccccacgtcccttgccacatggtgcattgttgccacgtggttttgacgtcgtccgagacctataagcgaagcccagactcgattccggcttggagcttcggagcttcccggacatctgacaaacaaaactggcgaagcccagacccgattcaggtgtggagagtttcccggacatctgacgaacaaaaccggcgaagcccagaggggttgggatcatggagttggatggcgtcatcctctagtggtcgacggtgggacagagcggcggaggtggaggccgacatcgacggacgccacgcccagtctaactccctcactcttcttgtctccgactacttccgccacagcgaggacgacacccatctctgtctgttcctccaccgcagcgtctatcaagcacctcacctttacgcccctctccatcaactactcgatgttttcgaacaagactccagcctcaacaaatcccagtgcagttacgcttgggacatgttcctccgattcgaccaccacgacaacctttcccctcccccaactcccacaacttcgacgataggcgcagcctcttcaacgacctcaagcagcagctcgaccgccaccatcgcgcctcccactccagaattcaccacatggttacgcttgggacatgttcctccgattcgaccaccacgacaacctttcccctcccccaactcccacaacttcgacgataggtgcagcctcttcaacgacctcaagcagcagctcgaccgccaccatcgcgcctcccactccagaattcaccacatgttcctccaatttggttgggttgttctctattttcttaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF677

Protein Analysis

298

Amino Acids

33.95

Weight (kDa)

7.77

Isoelectric Point (pI)

70.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021527)

Species Orthologous Gene IDs
rosa_laevigata RLG00000007981
rosa_multiflora Rmu_sc0003722.1_g000013 Rmu_sc0005277.1_g000017
rosa_roxburghii Rroxscaffold_1G00071120
rosa_samantha Rh4BG202000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 116
AccB7I CCANNNNNTGG 1 cut(s) 41
AccBSI CCGCTC 1 cut(s) 329
AccI GTMKAC 1 cut(s) 313
AccII CGCG 2 cut(s) 671, 828
AciI CCGC 6 cut(s) 329, 332, 406, 448, 660, 817
AclWI GGATC 1 cut(s) 286
AcsI RAATTY 2 cut(s) 686, 843
AcvI CACGTG 1 cut(s) 103
AcyI GRCGYC 3 cut(s) 113, 296, 358
AdeI CACNNNGTG 1 cut(s) 88
AfiI CCNNNNNNNGG 3 cut(s) 41, 217, 415
AflIII ACRYGT 3 cut(s) 555, 712, 852
AgsI TTSAA 2 cut(s) 636, 793
AhdI GACNNNNNGTC 1 cut(s) 71
AjiI CACGTC 1 cut(s) 73
AluBI AGCT 4 cut(s) 162, 170, 654, 811
AluI AGCT 4 cut(s) 162, 170, 654, 811
Alw26I GTCTC 2 cut(s) 116, 397
AlwI GGATC 1 cut(s) 286
AoxI GGCC 2 cut(s) 53, 342
ApeKI GCWGC 7 cut(s) 450, 626, 648, 651, 783, 805, 808
ApoI RAATTY 2 cut(s) 686, 843
AspLEI GCGC 4 cut(s) 34, 626, 673, 830
AspS9I GGNCC 1 cut(s) 54
AsuC2I CCSGG 2 cut(s) 175, 235
AsuHPI GGTGA 3 cut(s) 461, 682, 839
AsuII TTCGAA 1 cut(s) 507
BbrPI CACGTG 1 cut(s) 103
BbvI GCAGC 7 cut(s) 462, 638, 660, 663, 795, 817, 820
BccI CCATC 6 cut(s) 32, 286, 435, 495, 674, 831
BceAI ACGGC 1 cut(s) 68
BcnI CCSGG 2 cut(s) 175, 235
BcoDI GTCTC 2 cut(s) 116, 397
BfaI CTAG 2 cut(s) 9, 306
BisI GCNGC 8 cut(s) 330, 451, 627, 649, 652, 784, 806, 809
BlsI GCNGC 8 cut(s) 331, 452, 628, 650, 653, 785, 807, 810
Bme1390I CCNGG 2 cut(s) 175, 235
BmeRI GACNNNNNGTC 1 cut(s) 71
BmgBI CACGTC 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 54
BmrFI CCNGG 2 cut(s) 175, 235
BmrI ACTGGG 2 cut(s) 361, 529
BmuI ACTGGG 2 cut(s) 361, 529
BpmI CTGGAG 3 cut(s) 502, 666, 823
Bpu14I TTCGAA 1 cut(s) 507
BpuEI CTTGAG 2 cut(s) 628, 785
BpuMI CCSGG 2 cut(s) 175, 235
BsaAI YACGTR 1 cut(s) 103
BsaHI GRCGYC 3 cut(s) 113, 296, 358
BsaI GGTCTC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 50
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 217, 415
Bse118I RCCGGY 1 cut(s) 255
Bse1I ACTGG 3 cut(s) 200, 367, 535
BseDI CCNNGG 1 cut(s) 50
BseGI GGATG 2 cut(s) 297, 299
BseLI CCNNNNNNNGG 3 cut(s) 41, 217, 415
BseNI ACTGG 3 cut(s) 200, 367, 535
BseXI GCAGC 7 cut(s) 462, 638, 660, 663, 795, 817, 820
BsgI GTGCAG 2 cut(s) 559, 802
Bsh1236I CGCG 2 cut(s) 671, 828
Bsh1285I CGRYCG 2 cut(s) 660, 817
BshFI GGCC 2 cut(s) 55, 344
BsiEI CGRYCG 2 cut(s) 660, 817
BsiSI CCGG 4 cut(s) 152, 175, 235, 256
BslFI GGGAC 4 cut(s) 59, 335, 566, 723
BslI CCNNNNNNNGG 3 cut(s) 41, 217, 415
BsmAI GTCTC 2 cut(s) 116, 397
BsmFI GGGAC 4 cut(s) 59, 335, 566, 723
BsnI GGCC 2 cut(s) 55, 344
Bso31I GGTCTC 1 cut(s) 116
Bsp119I TTCGAA 1 cut(s) 507
Bsp143I GATC 1 cut(s) 278
BspACI CCGC 6 cut(s) 329, 332, 406, 448, 660, 817
BspANI GGCC 2 cut(s) 55, 344
BspFNI CGCG 2 cut(s) 671, 828
BspPI GGATC 1 cut(s) 286
BspT104I TTCGAA 1 cut(s) 507
BspTNI GGTCTC 1 cut(s) 116
BsrBI CCGCTC 1 cut(s) 329
BsrFI RCCGGY 1 cut(s) 255
BsrI ACTGG 3 cut(s) 200, 367, 535
BssAI RCCGGY 1 cut(s) 255
BssECI CCNNGG 1 cut(s) 50
BssMI GATC 1 cut(s) 278
BssNI GRCGYC 3 cut(s) 113, 296, 358
Bst4CI ACNGT 1 cut(s) 318
Bst6I CTCTTC 3 cut(s) 390, 637, 794
BstACI GRCGYC 3 cut(s) 113, 296, 358
BstBAI YACGTR 1 cut(s) 103
BstBI TTCGAA 1 cut(s) 507
BstC8I GCNNGC 1 cut(s) 16
BstDSI CCRYGG 1 cut(s) 50
BstF5I GGATG 2 cut(s) 297, 299
BstFNI CGCG 2 cut(s) 671, 828
BstHHI GCGC 4 cut(s) 34, 626, 673, 830
BstKTI GATC 1 cut(s) 281
BstMAI GTCTC 2 cut(s) 116, 397
BstMBI GATC 1 cut(s) 278
BstMCI CGRYCG 2 cut(s) 660, 817
BstMWI GCNNNNNNNGC 2 cut(s) 668, 825
BstNSI RCATGY 3 cut(s) 559, 716, 856
BstSCI CCNGG 2 cut(s) 173, 233
BstUI CGCG 2 cut(s) 671, 828
BstV1I GCAGC 7 cut(s) 462, 638, 660, 663, 795, 817, 820
BsuRI GGCC 2 cut(s) 55, 344
BtgI CCRYGG 1 cut(s) 50
BtgZI GCGATG 2 cut(s) 652, 809
BtrI CACGTC 1 cut(s) 73
BtsCI GGATG 2 cut(s) 297, 299
BtsIMutI CAGTG 1 cut(s) 542
Cac8I GCNNGC 1 cut(s) 16
CfoI GCGC 4 cut(s) 34, 626, 673, 830
Cfr10I RCCGGY 1 cut(s) 255
Cfr13I GGNCC 1 cut(s) 54
CseI GACGC 3 cut(s) 285, 366, 442
CspCI CAANNNNNGTGG 2 cut(s) 59, 94
CviAII CATG 6 cut(s) 85, 282, 556, 696, 713, 853
DpnI GATC 1 cut(s) 280
DpnII GATC 1 cut(s) 278
DraIII CACNNNGTG 1 cut(s) 88
DriI GACNNNNNGTC 1 cut(s) 71
Eam1104I CTCTTC 3 cut(s) 390, 637, 794
Eam1105I GACNNNNNGTC 1 cut(s) 71
EarI CTCTTC 3 cut(s) 390, 637, 794
EciI GGCGGA 2 cut(s) 347, 395
Eco31I GGTCTC 1 cut(s) 116
Eco72I CACGTG 1 cut(s) 103
EcoRI GAATTC 2 cut(s) 686, 843
FaeI CATG 6 cut(s) 88, 285, 559, 699, 716, 856
FaiI YATR 9 cut(s) 37, 59, 86, 129, 283, 557, 697, 714, 854
FaqI GGGAC 4 cut(s) 59, 335, 566, 723
FatI CATG 6 cut(s) 84, 281, 555, 695, 712, 852
FblI GTMKAC 1 cut(s) 313
Fnu4HI GCNGC 8 cut(s) 330, 451, 627, 649, 652, 784, 806, 809
FokI GGATG 2 cut(s) 286, 304
Fsp4HI GCNGC 8 cut(s) 330, 451, 627, 649, 652, 784, 806, 809
FspBI CTAG 2 cut(s) 9, 306
GlaI GCGC 4 cut(s) 33, 625, 672, 829
GluI GCNGC 8 cut(s) 330, 451, 627, 649, 652, 784, 806, 809
GsuI CTGGAG 3 cut(s) 502, 666, 823
HaeIII GGCC 2 cut(s) 55, 344
HapII CCGG 4 cut(s) 152, 175, 235, 256
HgaI GACGC 3 cut(s) 285, 366, 442
HhaI GCGC 4 cut(s) 34, 626, 673, 830
Hin1I GRCGYC 3 cut(s) 113, 296, 358
Hin1II CATG 6 cut(s) 88, 285, 559, 699, 716, 856
Hin6I GCGC 4 cut(s) 32, 624, 671, 828
HinP1I GCGC 4 cut(s) 32, 624, 671, 828
HincII GTYRAC 1 cut(s) 314
HindII GTYRAC 1 cut(s) 314
HinfI GANTC 7 cut(s) 46, 143, 148, 214, 515, 567, 724
HpaII CCGG 4 cut(s) 152, 175, 235, 256
HphI GGTGA 3 cut(s) 461, 682, 839
Hpy166II GTNNAC 1 cut(s) 314
Hpy188I TCNGA 7 cut(s) 121, 167, 184, 244, 397, 566, 723
Hpy188III TCNNGA 2 cut(s) 683, 840
Hpy8I GTNNAC 1 cut(s) 314
Hpy99I CGWCG 5 cut(s) 118, 318, 356, 619, 776
HpyCH4III ACNGT 1 cut(s) 318
HpyCH4IV ACGT 3 cut(s) 72, 102, 113
HpyCH4V TGCA 4 cut(s) 18, 91, 540, 783
HpyF10VI GCNNNNNNNGC 2 cut(s) 668, 825
HpySE526I ACGT 3 cut(s) 72, 102, 113
Hsp92I GRCGYC 3 cut(s) 113, 296, 358
Hsp92II CATG 6 cut(s) 88, 285, 559, 699, 716, 856
HspAI GCGC 4 cut(s) 32, 624, 671, 828
Kzo9I GATC 1 cut(s) 278
LmnI GCTCC 2 cut(s) 159, 167
Lsp1109I GCAGC 7 cut(s) 462, 638, 660, 663, 795, 817, 820
MaeI CTAG 2 cut(s) 9, 306
MaeII ACGT 3 cut(s) 72, 102, 113
MaeIII GTNAC 2 cut(s) 542, 699
MalI GATC 1 cut(s) 280
MbiI CCGCTC 1 cut(s) 329
MboI GATC 1 cut(s) 278
MboII GAAGA 3 cut(s) 377, 624, 781
MluCI AATT 4 cut(s) 686, 843, 863, 892
MlyI GAGTC 2 cut(s) 137, 509
MmeI TCCRAC 2 cut(s) 269, 420
MseI TTAA 1 cut(s) 891
MspI CCGG 4 cut(s) 152, 175, 235, 256
MspR9I CCNGG 2 cut(s) 175, 235
MvnI CGCG 2 cut(s) 671, 828
MwoI GCNNNNNNNGC 2 cut(s) 668, 825
NciI CCSGG 2 cut(s) 175, 235
NdeII GATC 1 cut(s) 278
NlaIII CATG 6 cut(s) 88, 285, 559, 699, 716, 856
NspI RCATGY 3 cut(s) 559, 716, 856
NspV TTCGAA 1 cut(s) 507
PciI ACATGT 3 cut(s) 555, 712, 852
PcsI WCGNNNNNNNCGW 3 cut(s) 504, 576, 733
PfeI GAWTC 5 cut(s) 46, 148, 214, 567, 724
PflFI GACNNNGTC 1 cut(s) 115
PflMI CCANNNNNTGG 1 cut(s) 41
PfoI TCCNGGA 2 cut(s) 173, 233
PkrI GCNGC 8 cut(s) 331, 452, 628, 650, 653, 785, 807, 810
PleI GAGTC 2 cut(s) 137, 509
PmaCI CACGTG 1 cut(s) 103
PmlI CACGTG 1 cut(s) 103
PpsI GAGTC 2 cut(s) 137, 509
Ppu21I YACGTR 1 cut(s) 103
PscI ACATGT 3 cut(s) 555, 712, 852
PspCI CACGTG 1 cut(s) 103
PspPI GGNCC 1 cut(s) 54
PsyI GACNNNGTC 1 cut(s) 115
SalI GTCGAC 1 cut(s) 312
SaqAI TTAA 1 cut(s) 891
SatI GCNGC 8 cut(s) 330, 451, 627, 649, 652, 784, 806, 809
Sau3AI GATC 1 cut(s) 278
Sau96I GGNCC 1 cut(s) 54
SchI GAGTC 2 cut(s) 137, 509
ScrFI CCNGG 2 cut(s) 175, 235
SfuI TTCGAA 1 cut(s) 507
SmlI CTYRAG 2 cut(s) 643, 800
SmoI CTYRAG 2 cut(s) 643, 800
Sse9I AATT 4 cut(s) 686, 843, 863, 892
SsiI CCGC 6 cut(s) 329, 332, 406, 448, 660, 817
SspMI CTAG 2 cut(s) 9, 306
StyD4I CCNGG 2 cut(s) 173, 233
TaaI ACNGT 1 cut(s) 318
TaiI ACGT 3 cut(s) 75, 105, 116
TasI AATT 4 cut(s) 686, 843, 863, 892
TauI GCSGC 1 cut(s) 332
TfiI GAWTC 5 cut(s) 46, 148, 214, 567, 724
Tru1I TTAA 1 cut(s) 891
Tru9I TTAA 1 cut(s) 891
TscAI CASTG 1 cut(s) 542
TseI GCWGC 7 cut(s) 450, 626, 648, 651, 783, 805, 808
TspGWI ACGGA 1 cut(s) 369
TspRI CASTG 1 cut(s) 542
Tth111I GACNNNGTC 1 cut(s) 115
Van91I CCANNNNNTGG 1 cut(s) 41
XapI RAATTY 2 cut(s) 686, 843
XceI RCATGY 3 cut(s) 559, 716, 856
XmiI GTMKAC 1 cut(s) 313
XspI CTAG 2 cut(s) 9, 306
ZraI GACGTC 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.