RLG00000008226

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0019409
Physical Location & Seq
Forward (+)
27407335 .. 27408775
1441 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008226

Sequence Viewer

Length: 1167 bp
ATGAAGAGACGCAAACTCCGCCGCTGTCACTCACCATCACCAACCAACACTAACGGACCCCTAAAACCAGAAGTTAACGAAGAGCCGAATGCCGAGGAACCCTACATTCTGCAATTGCCAGACTACATCATATTCGAGATCTTGTCCAGAATCCCAATCACAACCATGAACCGATGCCGGTTCGTGTGCAAGTCTTGGCTCCGCTTGTTCTCAGACCCCAGTTTCACCAAAACCCTATGCTGCAGAACACCCACCAGCCTTGTTGTTGTGTCGTCTACCCCATCTAGGGACTACTACTTGGTCGGCCTGGACGAGGCCTCCAGACCAAACGGAGATGCGTTGGAGCTGTGTAGTTATAGCAGGGAGTGCCTTGACGTAATCGGTTCTTGCAATGGTTTCCTCTTCCTATATGATTCCGCGCTTATCGATGATCATCGTCTTTACTTATCCAATCCCATCACCAGAGAGCGTTTGGCCTTGCCCAAGTACGATGGTCTTAATATAGACACTGTCTTGGGGTTTGGGTTTAGTCCAGCCAGCAATGTCTACAAAGTATTTGTGTTTAAAGGTGAAGAAGAAAATGGAGACTTCCGAGATGATGAATATAATGAAGAGGAGGTGGTGGTTTTGACGGTTGGCTCTTCGGTTTGGAGAAACATTGGGAAGTACTCAGTCTATTTTGGGAATACAGAAGATGGGTTTCCTTTTAATGGCTTTCTTCATTGGGTTGGGAGACCCAATAATTTGGTATGGGGATTTGATGTAGAAAGGGAGCTTTTCCAACAGTTTCCACCACTCCCATTGACATCTGAGGATACTATTCTTCTTGACAGTAGTGATTCGAGACTCGCAGCGTTGAGAGCTTCGCTCTGCCTTATAGTTACTAGGGGCCAAAATGTCAGTGTTTGGGTGATGAAGGATCATGGTGTTAAGGGATCTTGGAATAAGGAGTTTGAAATTCTGAATGAGTCTTTCGATCGATATATTCCTCAGCTACTGAAATTTACGGAGGGGCAGGTCTTGTTGTTACGTGACACTCAATTGGAAACTCATGGGCCTGGAAAAAAGGGCTTTTCCATGGTTGAGGTTGATGGGATACCAAAAAAGCTTTATAGTGGATATGTCCATATTCCAAGCTTTATTTCGCTTGCGGATATCAGGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

389

Amino Acids

44.13

Weight (kDa)

5.35

Isoelectric Point (pI)

43.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 36 - 77 5e-09 F-box domain
F-box-like PF12937 36 - 82 1.4e-07 F-box-like
FBA_3 PF08268 122 - 327 2.6e-16 F-box associated beta propeller domain
Beta-prop_KIB1-4 PF03478 125 - 315 6.8e-07 KIB1-4 beta-propeller
FBA_1 PF07734 127 - 329 2.4e-14 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019409)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0413271
rosa_laevigata RLG00000008226
rosa_multiflora Rmu_sc0000717.1_g000002
rosa_rugosa Rorug04G0119100
rosa_samantha Rh4AG179000 Rh4CG189800 Rh4DG174200
rosa_wichuraiana Rw4G014890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1006
AccI GTMKAC 2 cut(s) 275, 546
AccII CGCG 1 cut(s) 419
AciI CCGC 5 cut(s) 19, 22, 202, 417, 1151
AclWI GGATC 2 cut(s) 927, 943
AcsI RAATTY 2 cut(s) 957, 1001
AfaI GTAC 2 cut(s) 488, 668
AfiI CCNNNNNNNGG 4 cut(s) 285, 286, 313, 710
AgsI TTSAA 1 cut(s) 956
AjnI CCWGG 2 cut(s) 306, 1057
AjuI GAANNNNNNNTTGG 2 cut(s) 1126, 1158
AluBI AGCT 6 cut(s) 346, 775, 863, 994, 1108, 1137
AluI AGCT 6 cut(s) 346, 775, 863, 994, 1108, 1137
Alw26I GTCTC 3 cut(s) 579, 727, 838
AlwI GGATC 2 cut(s) 927, 943
AlwNI CAGNNNCTG 1 cut(s) 997
AoxI GGCC 5 cut(s) 304, 315, 474, 889, 1055
ApeKI GCWGC 2 cut(s) 240, 851
ApoI RAATTY 2 cut(s) 957, 1001
AspLEI GCGC 1 cut(s) 421
AspS9I GGNCC 3 cut(s) 56, 889, 1055
AsuHPI GGTGA 6 cut(s) 24, 30, 217, 451, 581, 922
AvaII GGWCC 1 cut(s) 56
BbvCI CCTCAGC 1 cut(s) 990
BbvI GCAGC 2 cut(s) 227, 863
BccI CCATC 6 cut(s) 43, 289, 464, 485, 689, 1085
BciT130I CCWGG 2 cut(s) 308, 1059
BciVI GTATCC 2 cut(s) 808, 1089
BclI TGATCA 1 cut(s) 430
BcoDI GTCTC 3 cut(s) 579, 727, 838
BfaI CTAG 2 cut(s) 285, 885
BfmI CTRYAG 1 cut(s) 241
BfuAI ACCTGC 1 cut(s) 1006
BfuI GTATCC 2 cut(s) 808, 1089
BglII AGATCT 1 cut(s) 138
BisI GCNGC 3 cut(s) 22, 241, 852
BlsI GCNGC 3 cut(s) 23, 242, 853
BmcAI AGTACT 1 cut(s) 668
Bme1390I CCNGG 2 cut(s) 308, 1059
Bme18I GGWCC 1 cut(s) 56
BmgT120I GGNCC 3 cut(s) 56, 889, 1055
BmiI GGNNCC 4 cut(s) 58, 99, 200, 890
BmrFI CCNGG 2 cut(s) 308, 1059
BmrI ACTGGG 1 cut(s) 213
BmsI GCATC 2 cut(s) 164, 325
BmuI ACTGGG 1 cut(s) 213
BplI GAGNNNNNCTC 2 cut(s) 852, 884
BpmI CTGGAG 1 cut(s) 304
Bpu10I CCTNAGC 1 cut(s) 990
Bsa29I ATCGAT 2 cut(s) 426, 979
BsaAI YACGTR 1 cut(s) 1031
BsaBI GATNNNNATC 1 cut(s) 432
BsaI GGTCTC 1 cut(s) 727
BsaJI CCNNGG 2 cut(s) 93, 1077
BsaXI ACNNNNNCTCC 3 cut(s) 30, 302, 332
Bsc4I CCNNNNNNNGG 4 cut(s) 285, 286, 313, 710
Bse118I RCCGGY 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 219
Bse3DI GCAATG 2 cut(s) 397, 547
Bse8I GATNNNNATC 1 cut(s) 432
BseBI CCWGG 2 cut(s) 308, 1059
BseCI ATCGAT 2 cut(s) 426, 979
BseDI CCNNGG 2 cut(s) 93, 1077
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 4 cut(s) 285, 286, 313, 710
BseMI GCAATG 2 cut(s) 397, 547
BseMII CTCAG 4 cut(s) 225, 684, 801, 1004
BseNI ACTGG 1 cut(s) 219
BseRI GAGGAG 1 cut(s) 629
BseXI GCAGC 2 cut(s) 227, 863
Bsh1236I CGCG 1 cut(s) 419
Bsh1285I CGRYCG 1 cut(s) 979
BshFI GGCC 5 cut(s) 306, 317, 476, 891, 1057
BshVI ATCGAT 2 cut(s) 426, 979
BsiEI CGRYCG 1 cut(s) 979
BsiSI CCGG 1 cut(s) 178
BslFI GGGAC 1 cut(s) 302
BslI CCNNNNNNNGG 4 cut(s) 285, 286, 313, 710
BsmAI GTCTC 3 cut(s) 579, 727, 838
BsmFI GGGAC 1 cut(s) 302
BsmI GAATGC 1 cut(s) 94
BsnI GGCC 5 cut(s) 306, 317, 476, 891, 1057
Bso31I GGTCTC 1 cut(s) 727
Bsp143I GATC 5 cut(s) 138, 430, 919, 935, 976
Bsp19I CCATGG 1 cut(s) 1077
BspACI CCGC 5 cut(s) 19, 22, 202, 417, 1151
BspANI GGCC 5 cut(s) 306, 317, 476, 891, 1057
BspCNI CTCAG 4 cut(s) 224, 683, 802, 1003
BspDI ATCGAT 2 cut(s) 426, 979
BspFNI CGCG 1 cut(s) 419
BspLI GGNNCC 4 cut(s) 58, 99, 200, 890
BspMAI CTGCAG 1 cut(s) 245
BspMI ACCTGC 1 cut(s) 1006
BspPI GGATC 2 cut(s) 927, 943
BspQI GCTCTTC 2 cut(s) 75, 646
BspTNI GGTCTC 1 cut(s) 727
BsrDI GCAATG 2 cut(s) 397, 547
BsrFI RCCGGY 1 cut(s) 177
BsrI ACTGG 1 cut(s) 219
BssAI RCCGGY 1 cut(s) 177
BssECI CCNNGG 2 cut(s) 93, 1077
BssMI GATC 5 cut(s) 138, 430, 919, 935, 976
BssT1I CCWWGG 1 cut(s) 1077
Bst2UI CCWGG 2 cut(s) 308, 1059
Bst4CI ACNGT 4 cut(s) 511, 634, 786, 833
Bst6I CTCTTC 4 cut(s) 75, 407, 606, 646
BstAPI GCANNNNNTGC 1 cut(s) 366
BstBAI YACGTR 1 cut(s) 1031
BstC8I GCNNGC 2 cut(s) 538, 1149
BstDEI CTNAG 4 cut(s) 211, 670, 810, 990
BstDSI CCRYGG 1 cut(s) 1077
BstENI CCTNNNNNAGG 1 cut(s) 311
BstFNI CGCG 1 cut(s) 419
BstHHI GCGC 1 cut(s) 421
BstKTI GATC 5 cut(s) 141, 433, 922, 938, 979
BstMAI GTCTC 3 cut(s) 579, 727, 838
BstMBI GATC 5 cut(s) 138, 430, 919, 935, 976
BstMCI CGRYCG 1 cut(s) 979
BstMWI GCNNNNNNNGC 3 cut(s) 18, 366, 860
BstNI CCWGG 2 cut(s) 308, 1059
BstSCI CCNGG 2 cut(s) 306, 1057
BstSFI CTRYAG 1 cut(s) 241
BstUI CGCG 1 cut(s) 419
BstV1I GCAGC 2 cut(s) 227, 863
BstX2I RGATCY 2 cut(s) 138, 935
BstXI CCANNNNNNTGG 1 cut(s) 745
BstYI RGATCY 2 cut(s) 138, 935
Bsu15I ATCGAT 2 cut(s) 426, 979
BsuI GTATCC 2 cut(s) 808, 1089
BsuRI GGCC 5 cut(s) 306, 317, 476, 891, 1057
BsuTUI ATCGAT 2 cut(s) 426, 979
BtgI CCRYGG 1 cut(s) 1077
BtsIMutI CAGTG 2 cut(s) 507, 907
BveI ACCTGC 1 cut(s) 1006
Cac8I GCNNGC 2 cut(s) 538, 1149
CaiI CAGNNNCTG 1 cut(s) 997
CfoI GCGC 1 cut(s) 421
Cfr10I RCCGGY 1 cut(s) 177
Cfr13I GGNCC 3 cut(s) 56, 889, 1055
ClaI ATCGAT 2 cut(s) 426, 979
CseI GACGC 1 cut(s) 18
Csp6I GTAC 2 cut(s) 487, 667
CspCI CAANNNNNGTGG 4 cut(s) 241, 276, 783, 818
CviAII CATG 4 cut(s) 166, 923, 1052, 1078
CviQI GTAC 2 cut(s) 487, 667
DdeI CTNAG 4 cut(s) 211, 670, 810, 990
DpnI GATC 5 cut(s) 140, 432, 921, 937, 978
DpnII GATC 5 cut(s) 138, 430, 919, 935, 976
DraI TTTAAA 1 cut(s) 565
Eam1104I CTCTTC 4 cut(s) 75, 407, 606, 646
EarI CTCTTC 4 cut(s) 75, 407, 606, 646
EciI GGCGGA 1 cut(s) 8
Eco130I CCWWGG 1 cut(s) 1077
Eco147I AGGCCT 1 cut(s) 317
Eco31I GGTCTC 1 cut(s) 727
Eco32I GATATC 1 cut(s) 1156
Eco47I GGWCC 1 cut(s) 56
EcoNI CCTNNNNNAGG 1 cut(s) 311
EcoRII CCWGG 2 cut(s) 306, 1057
EcoRV GATATC 1 cut(s) 1156
EcoT14I CCWWGG 1 cut(s) 1077
ErhI CCWWGG 1 cut(s) 1077
FaeI CATG 4 cut(s) 169, 926, 1055, 1081
FaqI GGGAC 1 cut(s) 302
FatI CATG 4 cut(s) 165, 922, 1051, 1077
FbaI TGATCA 1 cut(s) 430
FblI GTMKAC 2 cut(s) 275, 546
Fnu4HI GCNGC 3 cut(s) 22, 241, 852
Fsp4HI GCNGC 3 cut(s) 22, 241, 852
FspBI CTAG 2 cut(s) 285, 885
GlaI GCGC 1 cut(s) 420
GluI GCNGC 3 cut(s) 22, 241, 852
GsuI CTGGAG 1 cut(s) 304
HaeIII GGCC 5 cut(s) 306, 317, 476, 891, 1057
HapII CCGG 1 cut(s) 178
HgaI GACGC 1 cut(s) 18
HhaI GCGC 1 cut(s) 421
Hin1II CATG 4 cut(s) 169, 926, 1055, 1081
Hin6I GCGC 1 cut(s) 419
HinP1I GCGC 1 cut(s) 419
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HindIII AAGCTT 2 cut(s) 1106, 1135
HinfI GANTC 5 cut(s) 150, 413, 839, 846, 968
HpaI GTTAAC 1 cut(s) 76
HpaII CCGG 1 cut(s) 178
HphI GGTGA 6 cut(s) 24, 30, 217, 451, 581, 922
Hpy166II GTNNAC 3 cut(s) 76, 276, 547
Hpy188I TCNGA 4 cut(s) 214, 593, 811, 963
Hpy188III TCNNGA 5 cut(s) 136, 147, 321, 827, 843
Hpy8I GTNNAC 3 cut(s) 76, 276, 547
HpyAV CCTTC 1 cut(s) 910
HpyCH4III ACNGT 4 cut(s) 511, 634, 786, 833
HpyCH4IV ACGT 2 cut(s) 375, 1030
HpyCH4V TGCA 4 cut(s) 112, 189, 243, 390
HpyF10VI GCNNNNNNNGC 3 cut(s) 18, 366, 860
HpyF3I CTNAG 4 cut(s) 211, 670, 810, 990
HpySE526I ACGT 2 cut(s) 375, 1030
Hsp92II CATG 4 cut(s) 169, 926, 1055, 1081
HspAI GCGC 1 cut(s) 419
Ksp22I TGATCA 1 cut(s) 430
KspAI GTTAAC 1 cut(s) 76
Kzo9I GATC 5 cut(s) 138, 430, 919, 935, 976
LguI GCTCTTC 2 cut(s) 75, 646
LmnI GCTCC 3 cut(s) 204, 343, 772
Lsp1109I GCAGC 2 cut(s) 227, 863
LweI GCATC 2 cut(s) 164, 325
MaeI CTAG 2 cut(s) 285, 885
MaeII ACGT 2 cut(s) 375, 1030
MaeIII GTNAC 4 cut(s) 26, 880, 1026, 1031
MalI GATC 5 cut(s) 140, 432, 921, 937, 978
MboI GATC 5 cut(s) 138, 430, 919, 935, 976
MfeI CAATTG 2 cut(s) 113, 1040
MflI RGATCY 2 cut(s) 138, 935
MluCI AATT 5 cut(s) 113, 742, 957, 1001, 1040
MlyI GAGTC 2 cut(s) 840, 977
MmeI TCCRAC 2 cut(s) 321, 805
MseI TTAA 6 cut(s) 75, 498, 564, 708, 930, 1165
MslI CAYNNNNRTG 1 cut(s) 164
MspA1I CMGCKG 1 cut(s) 24
MspI CCGG 1 cut(s) 178
MspR9I CCNGG 2 cut(s) 308, 1059
MunI CAATTG 2 cut(s) 113, 1040
Mva1269I GAATGC 1 cut(s) 94
MvaI CCWGG 2 cut(s) 308, 1059
MvnI CGCG 1 cut(s) 419
MwoI GCNNNNNNNGC 3 cut(s) 18, 366, 860
NcoI CCATGG 1 cut(s) 1077
NdeII GATC 5 cut(s) 138, 430, 919, 935, 976
NlaIII CATG 4 cut(s) 169, 926, 1055, 1081
NlaIV GGNNCC 4 cut(s) 58, 99, 200, 890
NmeAIII GCCGAG 1 cut(s) 118
NmuCI GTSAC 2 cut(s) 26, 1031
PceI AGGCCT 1 cut(s) 317
PciSI GCTCTTC 2 cut(s) 75, 646
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PctI GAATGC 1 cut(s) 94
PfeI GAWTC 3 cut(s) 150, 413, 839
PflFI GACNNNGTC 1 cut(s) 509
PkrI GCNGC 3 cut(s) 23, 242, 853
Ple19I CGATCG 1 cut(s) 979
PleI GAGTC 2 cut(s) 840, 976
PpsI GAGTC 2 cut(s) 840, 976
Ppu21I YACGTR 1 cut(s) 1031
Psp6I CCWGG 2 cut(s) 306, 1057
PspGI CCWGG 2 cut(s) 306, 1057
PspN4I GGNNCC 4 cut(s) 58, 99, 200, 890
PspPI GGNCC 3 cut(s) 56, 889, 1055
PstI CTGCAG 1 cut(s) 245
PstNI CAGNNNCTG 1 cut(s) 997
PsuI RGATCY 2 cut(s) 138, 935
PsyI GACNNNGTC 1 cut(s) 509
PvuI CGATCG 1 cut(s) 979
RsaI GTAC 2 cut(s) 488, 668
RsaNI GTAC 2 cut(s) 487, 667
RseI CAYNNNNRTG 1 cut(s) 164
SapI GCTCTTC 2 cut(s) 75, 646
SaqAI TTAA 6 cut(s) 75, 498, 564, 708, 930, 1165
SatI GCNGC 3 cut(s) 22, 241, 852
Sau3AI GATC 5 cut(s) 138, 430, 919, 935, 976
Sau96I GGNCC 3 cut(s) 56, 889, 1055
ScaI AGTACT 1 cut(s) 668
SchI GAGTC 2 cut(s) 840, 977
ScrFI CCNGG 2 cut(s) 308, 1059
SfaNI GCATC 2 cut(s) 164, 325
SfcI CTRYAG 1 cut(s) 241
SinI GGWCC 1 cut(s) 56
SmiMI CAYNNNNRTG 1 cut(s) 164
Sse9I AATT 5 cut(s) 113, 742, 957, 1001, 1040
SseBI AGGCCT 1 cut(s) 317
SsiI CCGC 5 cut(s) 19, 22, 202, 417, 1151
SspMI CTAG 2 cut(s) 285, 885
StuI AGGCCT 1 cut(s) 317
StyD4I CCNGG 2 cut(s) 306, 1057
StyI CCWWGG 1 cut(s) 1077
TaaI ACNGT 4 cut(s) 511, 634, 786, 833
TaiI ACGT 2 cut(s) 378, 1033
TaqI TCGA 5 cut(s) 135, 426, 842, 975, 979
TasI AATT 5 cut(s) 113, 742, 957, 1001, 1040
TatI WGTACW 1 cut(s) 666
TauI GCSGC 1 cut(s) 24
TfiI GAWTC 3 cut(s) 150, 413, 839
Tru1I TTAA 6 cut(s) 75, 498, 564, 708, 930, 1165
Tru9I TTAA 6 cut(s) 75, 498, 564, 708, 930, 1165
TscAI CASTG 2 cut(s) 514, 907
TseFI GTSAC 2 cut(s) 26, 1031
TseI GCWGC 2 cut(s) 240, 851
Tsp45I GTSAC 2 cut(s) 26, 1031
TspDTI ATGAA 6 cut(s) 17, 182, 615, 624, 710, 929
TspGWI ACGGA 3 cut(s) 69, 345, 1022
TspRI CASTG 2 cut(s) 514, 907
Tth111I GACNNNGTC 1 cut(s) 509
VpaK11BI GGWCC 1 cut(s) 56
XagI CCTNNNNNAGG 1 cut(s) 311
XapI RAATTY 2 cut(s) 957, 1001
XcmI CCANNNNNNNNNTGG 1 cut(s) 469
XmiI GTMKAC 2 cut(s) 275, 546
XspI CTAG 2 cut(s) 285, 885
ZrmI AGTACT 1 cut(s) 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.