Rw4G014890

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0019409
Physical Location & Seq
Reverse (-)
34418287 .. 34419483
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G014890.1

Sequence Viewer

Length: 1197 bp
ATGAAGAGACGCAAACTCCGCCGCTGTCACTCGCCATCACCAACCAACACTAACGGACCCCTAAAACCAGAAGTTAACGAAGAGCCGAATGCAGAGGAACCCCAACAACAAAATGACCAGCATGCCGAGGAACCCTACATTCTGCAATTGCCAGACTACATCATATTCGAGATCTTGTCCAGAATCCCAATCACAACCATGAACCGATGCCGGTTCGTGTGCAAGTCTTGGCTCCGCTTGTTCTCAGACCCCAGTTTCACCAAAACCCTATGTTGCAGAACACCCACCAGCCTTGTTGTTGTGTCGTCTACCCCATCTAGGGACTACTACTTGGTCGGCCTGGACGAGGCCTCCGGACCAAACGGAGATGTGTTGGAGCTGTGTAGTTATAGCAGGGAGCGCCTTGACATAATCGGTTCTTGCAATGGTTTCCTCTTCCTATATGATTCCGCGCTTATCGATGATCATCGTCTTTACTTATCCAATCCCATCACCAGAGAGCGTTTGGCCTTGCCCAAGTATGATGGTCTTAATATAGACACTAACTTGGGGTTTGGGTTTAGTCCAGCCAGCAATGTCTACAAAGTATTTGTGTTTAAAAGTGAAGAAGAAAATGGAGACTTCCGAGACGAATATAATGAAGAGGAGGTGGTGGTTTTGACGGTTGGCTCTTCGGTTTGGAGAAACATTGGGAAGTATTCAGTCTATTTTGGGAATACAGAATATGGATTTCCTTTTAATGGCTTTCTTCATTGGGTTGGGAGACCCAATAATTTGGTATGGGGATTTGATGTAGAAAGGGAGCTTTTCCAACAGTTTCCACCACTCCCATTGACATCTGAGGATACTATTCTTCTTGACAGTAGTGATTCGAGACTCGCAGCGTTGAGAGCTTCGCTCTGCCTTATAGTTACTAGGGGCCAAATTGTCAGTGTTTGGGTGATGAAGGATCATGGTGCTAAGGGGTCTTGGAATAAGGAGTTTGAAATTCTGAATGAGTCTTTCGATCGATATATTCCTCAGCTACTGAAATTTACAGAGGGGCAGGTCTTGTTGTTACGTGACACTCAATTGGAAACTCATAGTCCTGGAAAAAAGGGCTTTTCCATGGTTGAGGTTGATGGGATACCAATAAAGCTTTATAGTGGATATGTCCATATTCCAAGCTTTGTTTCGCTTGCGGATATCAGGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

398

Amino Acids

45.39

Weight (kDa)

5.27

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 47 - 88 5.1e-09 F-box domain
F-box-like PF12937 47 - 93 1.5e-07 F-box-like
FBA_1 PF07734 134 - 338 2.7e-14 F-box associated beta propeller domain
FBA_3 PF08268 135 - 337 4e-16 F-box associated beta propeller domain
Beta-prop_KIB1-4 PF03478 135 - 325 4.4e-07 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019409)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0413271
rosa_laevigata RLG00000008226
rosa_multiflora Rmu_sc0000717.1_g000002
rosa_rugosa Rorug04G0119100
rosa_samantha Rh4AG179000 Rh4CG189800 Rh4DG174200
rosa_wichuraiana Rw4G014890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1036
AccI GTMKAC 2 cut(s) 308, 579
AccII CGCG 1 cut(s) 452
AccIII TCCGGA 1 cut(s) 353
AciI CCGC 5 cut(s) 19, 22, 235, 450, 1181
AclWI GGATC 1 cut(s) 957
AcsI RAATTY 2 cut(s) 987, 1031
AfiI CCNNNNNNNGG 4 cut(s) 318, 319, 346, 740
AgsI TTSAA 1 cut(s) 986
AjnI CCWGG 2 cut(s) 339, 1087
AjuI GAANNNNNNNTTGG 2 cut(s) 1156, 1188
AluBI AGCT 6 cut(s) 379, 805, 893, 1024, 1138, 1167
AluI AGCT 6 cut(s) 379, 805, 893, 1024, 1138, 1167
Alw26I GTCTC 4 cut(s) 612, 621, 757, 868
AlwI GGATC 1 cut(s) 957
AlwNI CAGNNNCTG 1 cut(s) 1027
Aor13HI TCCGGA 1 cut(s) 353
AoxI GGCC 4 cut(s) 337, 348, 507, 919
ApeKI GCWGC 1 cut(s) 881
ApoI RAATTY 2 cut(s) 987, 1031
AspLEI GCGC 2 cut(s) 402, 454
AspS9I GGNCC 3 cut(s) 56, 356, 919
AsuHPI GGTGA 4 cut(s) 30, 250, 484, 952
AvaII GGWCC 2 cut(s) 56, 356
BbvCI CCTCAGC 1 cut(s) 1020
BbvI GCAGC 1 cut(s) 893
BccI CCATC 5 cut(s) 43, 322, 497, 518, 1115
BciT130I CCWGG 2 cut(s) 341, 1089
BciVI GTATCC 2 cut(s) 838, 1119
BclI TGATCA 1 cut(s) 463
BcoDI GTCTC 4 cut(s) 612, 621, 757, 868
BfaI CTAG 2 cut(s) 318, 915
BfoI RGCGCY 1 cut(s) 403
BfuAI ACCTGC 1 cut(s) 1036
BfuI GTATCC 2 cut(s) 838, 1119
BglII AGATCT 1 cut(s) 171
BisI GCNGC 2 cut(s) 22, 882
BlsI GCNGC 2 cut(s) 23, 883
Bme1390I CCNGG 2 cut(s) 341, 1089
Bme18I GGWCC 2 cut(s) 56, 356
BmgT120I GGNCC 3 cut(s) 56, 356, 919
BmiI GGNNCC 5 cut(s) 58, 99, 132, 233, 920
BmrFI CCNGG 2 cut(s) 341, 1089
BmrI ACTGGG 1 cut(s) 246
BmsI GCATC 1 cut(s) 197
BmuI ACTGGG 1 cut(s) 246
BplI GAGNNNNNCTC 2 cut(s) 882, 914
Bpu10I CCTNAGC 2 cut(s) 960, 1020
Bsa29I ATCGAT 2 cut(s) 459, 1009
BsaAI YACGTR 1 cut(s) 1061
BsaBI GATNNNNATC 1 cut(s) 465
BsaI GGTCTC 1 cut(s) 757
BsaJI CCNNGG 2 cut(s) 126, 1107
BsaWI WCCGGW 1 cut(s) 353
BsaXI ACNNNNNCTCC 3 cut(s) 30, 335, 365
Bsc4I CCNNNNNNNGG 4 cut(s) 318, 319, 346, 740
Bse118I RCCGGY 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 252
Bse3DI GCAATG 2 cut(s) 430, 580
Bse8I GATNNNNATC 1 cut(s) 465
BseAI TCCGGA 1 cut(s) 353
BseBI CCWGG 2 cut(s) 341, 1089
BseCI ATCGAT 2 cut(s) 459, 1009
BseDI CCNNGG 2 cut(s) 126, 1107
BseJI GATNNNNATC 1 cut(s) 465
BseLI CCNNNNNNNGG 4 cut(s) 318, 319, 346, 740
BseMI GCAATG 2 cut(s) 430, 580
BseMII CTCAG 3 cut(s) 258, 831, 1034
BseNI ACTGG 1 cut(s) 252
BseRI GAGGAG 1 cut(s) 659
BseXI GCAGC 1 cut(s) 893
Bsh1236I CGCG 1 cut(s) 452
Bsh1285I CGRYCG 1 cut(s) 1009
BshFI GGCC 4 cut(s) 339, 350, 509, 921
BshVI ATCGAT 2 cut(s) 459, 1009
BsiEI CGRYCG 1 cut(s) 1009
BsiSI CCGG 2 cut(s) 211, 354
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 4 cut(s) 318, 319, 346, 740
BsmAI GTCTC 4 cut(s) 612, 621, 757, 868
BsmBI CGTCTC 1 cut(s) 621
BsmFI GGGAC 1 cut(s) 335
BsmI GAATGC 1 cut(s) 94
BsnI GGCC 4 cut(s) 339, 350, 509, 921
Bso31I GGTCTC 1 cut(s) 757
Bsp13I TCCGGA 1 cut(s) 353
Bsp143I GATC 4 cut(s) 171, 463, 949, 1006
Bsp19I CCATGG 1 cut(s) 1107
BspACI CCGC 5 cut(s) 19, 22, 235, 450, 1181
BspANI GGCC 4 cut(s) 339, 350, 509, 921
BspCNI CTCAG 3 cut(s) 257, 832, 1033
BspDI ATCGAT 2 cut(s) 459, 1009
BspEI TCCGGA 1 cut(s) 353
BspFNI CGCG 1 cut(s) 452
BspLI GGNNCC 5 cut(s) 58, 99, 132, 233, 920
BspMI ACCTGC 1 cut(s) 1036
BspPI GGATC 1 cut(s) 957
BspQI GCTCTTC 2 cut(s) 75, 676
BspTNI GGTCTC 1 cut(s) 757
BsrDI GCAATG 2 cut(s) 430, 580
BsrFI RCCGGY 1 cut(s) 210
BsrI ACTGG 1 cut(s) 252
BssAI RCCGGY 1 cut(s) 210
BssECI CCNNGG 2 cut(s) 126, 1107
BssMI GATC 4 cut(s) 171, 463, 949, 1006
BssT1I CCWWGG 1 cut(s) 1107
Bst2UI CCWGG 2 cut(s) 341, 1089
Bst4CI ACNGT 3 cut(s) 664, 816, 863
Bst6I CTCTTC 4 cut(s) 75, 440, 636, 676
BstBAI YACGTR 1 cut(s) 1061
BstC8I GCNNGC 3 cut(s) 123, 571, 1179
BstDEI CTNAG 4 cut(s) 244, 840, 960, 1020
BstDSI CCRYGG 1 cut(s) 1107
BstENI CCTNNNNNAGG 1 cut(s) 344
BstFNI CGCG 1 cut(s) 452
BstH2I RGCGCY 1 cut(s) 403
BstHHI GCGC 2 cut(s) 402, 454
BstKTI GATC 4 cut(s) 174, 466, 952, 1009
BstMAI GTCTC 4 cut(s) 612, 621, 757, 868
BstMBI GATC 4 cut(s) 171, 463, 949, 1006
BstMCI CGRYCG 1 cut(s) 1009
BstMWI GCNNNNNNNGC 3 cut(s) 18, 399, 890
BstNI CCWGG 2 cut(s) 341, 1089
BstNSI RCATGY 1 cut(s) 125
BstSCI CCNGG 2 cut(s) 339, 1087
BstUI CGCG 1 cut(s) 452
BstV1I GCAGC 1 cut(s) 893
BstX2I RGATCY 1 cut(s) 171
BstXI CCANNNNNNTGG 1 cut(s) 775
BstYI RGATCY 1 cut(s) 171
Bsu15I ATCGAT 2 cut(s) 459, 1009
BsuI GTATCC 2 cut(s) 838, 1119
BsuRI GGCC 4 cut(s) 339, 350, 509, 921
BsuTUI ATCGAT 2 cut(s) 459, 1009
BtgI CCRYGG 1 cut(s) 1107
BtsIMutI CAGTG 1 cut(s) 937
BveI ACCTGC 1 cut(s) 1036
Cac8I GCNNGC 3 cut(s) 123, 571, 1179
CaiI CAGNNNCTG 1 cut(s) 1027
CfoI GCGC 2 cut(s) 402, 454
Cfr10I RCCGGY 1 cut(s) 210
Cfr13I GGNCC 3 cut(s) 56, 356, 919
ClaI ATCGAT 2 cut(s) 459, 1009
CseI GACGC 1 cut(s) 18
CspCI CAANNNNNGTGG 4 cut(s) 274, 309, 813, 848
CviAII CATG 4 cut(s) 122, 199, 953, 1108
DdeI CTNAG 4 cut(s) 244, 840, 960, 1020
DpnI GATC 4 cut(s) 173, 465, 951, 1008
DpnII GATC 4 cut(s) 171, 463, 949, 1006
DraI TTTAAA 1 cut(s) 598
Eam1104I CTCTTC 4 cut(s) 75, 440, 636, 676
EarI CTCTTC 4 cut(s) 75, 440, 636, 676
EciI GGCGGA 1 cut(s) 8
Eco130I CCWWGG 1 cut(s) 1107
Eco147I AGGCCT 1 cut(s) 350
Eco31I GGTCTC 1 cut(s) 757
Eco32I GATATC 1 cut(s) 1186
Eco47I GGWCC 2 cut(s) 56, 356
EcoNI CCTNNNNNAGG 1 cut(s) 344
EcoRII CCWGG 2 cut(s) 339, 1087
EcoRV GATATC 1 cut(s) 1186
EcoT14I CCWWGG 1 cut(s) 1107
ErhI CCWWGG 1 cut(s) 1107
Esp3I CGTCTC 1 cut(s) 621
FaeI CATG 4 cut(s) 125, 202, 956, 1111
FaqI GGGAC 1 cut(s) 335
FatI CATG 4 cut(s) 121, 198, 952, 1107
FbaI TGATCA 1 cut(s) 463
FblI GTMKAC 2 cut(s) 308, 579
Fnu4HI GCNGC 2 cut(s) 22, 882
Fsp4HI GCNGC 2 cut(s) 22, 882
FspBI CTAG 2 cut(s) 318, 915
GlaI GCGC 2 cut(s) 401, 453
GluI GCNGC 2 cut(s) 22, 882
HaeII RGCGCY 1 cut(s) 403
HaeIII GGCC 4 cut(s) 339, 350, 509, 921
HapII CCGG 2 cut(s) 211, 354
HgaI GACGC 1 cut(s) 18
HhaI GCGC 2 cut(s) 402, 454
Hin1II CATG 4 cut(s) 125, 202, 956, 1111
Hin6I GCGC 2 cut(s) 400, 452
HinP1I GCGC 2 cut(s) 400, 452
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HindIII AAGCTT 2 cut(s) 1136, 1165
HinfI GANTC 5 cut(s) 183, 446, 869, 876, 998
HpaI GTTAAC 1 cut(s) 76
HpaII CCGG 2 cut(s) 211, 354
HphI GGTGA 4 cut(s) 30, 250, 484, 952
Hpy166II GTNNAC 3 cut(s) 76, 309, 580
Hpy188I TCNGA 4 cut(s) 247, 626, 841, 993
Hpy188III TCNNGA 5 cut(s) 169, 180, 354, 857, 873
Hpy8I GTNNAC 3 cut(s) 76, 309, 580
HpyAV CCTTC 1 cut(s) 940
HpyCH4III ACNGT 3 cut(s) 664, 816, 863
HpyCH4IV ACGT 1 cut(s) 1060
HpyCH4V TGCA 5 cut(s) 92, 145, 222, 276, 423
HpyF10VI GCNNNNNNNGC 3 cut(s) 18, 399, 890
HpyF3I CTNAG 4 cut(s) 244, 840, 960, 1020
HpySE526I ACGT 1 cut(s) 1060
Hsp92II CATG 4 cut(s) 125, 202, 956, 1111
HspAI GCGC 2 cut(s) 400, 452
Kpn2I TCCGGA 1 cut(s) 353
Ksp22I TGATCA 1 cut(s) 463
KspAI GTTAAC 1 cut(s) 76
Kzo9I GATC 4 cut(s) 171, 463, 949, 1006
LguI GCTCTTC 2 cut(s) 75, 676
LmnI GCTCC 4 cut(s) 237, 376, 397, 802
Lsp1109I GCAGC 1 cut(s) 893
LweI GCATC 1 cut(s) 197
MaeI CTAG 2 cut(s) 318, 915
MaeII ACGT 1 cut(s) 1060
MaeIII GTNAC 4 cut(s) 26, 910, 1056, 1061
MalI GATC 4 cut(s) 173, 465, 951, 1008
MboI GATC 4 cut(s) 171, 463, 949, 1006
MboII GAAGA 9 cut(s) 16, 92, 427, 617, 620, 653, 663, 740, 845
MfeI CAATTG 2 cut(s) 146, 1070
MflI RGATCY 1 cut(s) 171
MluCI AATT 6 cut(s) 146, 772, 924, 987, 1031, 1070
MlyI GAGTC 2 cut(s) 870, 1007
MmeI TCCRAC 2 cut(s) 354, 835
MroI TCCGGA 1 cut(s) 353
MseI TTAA 5 cut(s) 75, 531, 597, 738, 1195
MslI CAYNNNNRTG 1 cut(s) 197
MspA1I CMGCKG 1 cut(s) 24
MspI CCGG 2 cut(s) 211, 354
MspR9I CCNGG 2 cut(s) 341, 1089
MunI CAATTG 2 cut(s) 146, 1070
Mva1269I GAATGC 1 cut(s) 94
MvaI CCWGG 2 cut(s) 341, 1089
MvnI CGCG 1 cut(s) 452
MwoI GCNNNNNNNGC 3 cut(s) 18, 399, 890
NcoI CCATGG 1 cut(s) 1107
NdeII GATC 4 cut(s) 171, 463, 949, 1006
NlaIII CATG 4 cut(s) 125, 202, 956, 1111
NlaIV GGNNCC 5 cut(s) 58, 99, 132, 233, 920
NmeAIII GCCGAG 1 cut(s) 151
NmuCI GTSAC 2 cut(s) 26, 1061
NspI RCATGY 1 cut(s) 125
PaeI GCATGC 1 cut(s) 125
PceI AGGCCT 1 cut(s) 350
PciSI GCTCTTC 2 cut(s) 75, 676
PcsI WCGNNNNNNNCGW 1 cut(s) 342
PctI GAATGC 1 cut(s) 94
PfeI GAWTC 3 cut(s) 183, 446, 869
PfoI TCCNGGA 1 cut(s) 1087
PkrI GCNGC 2 cut(s) 23, 883
Ple19I CGATCG 1 cut(s) 1009
PleI GAGTC 2 cut(s) 870, 1006
PpsI GAGTC 2 cut(s) 870, 1006
Ppu21I YACGTR 1 cut(s) 1061
Psp6I CCWGG 2 cut(s) 339, 1087
PspGI CCWGG 2 cut(s) 339, 1087
PspN4I GGNNCC 5 cut(s) 58, 99, 132, 233, 920
PspPI GGNCC 3 cut(s) 56, 356, 919
PstNI CAGNNNCTG 1 cut(s) 1027
PsuI RGATCY 1 cut(s) 171
PvuI CGATCG 1 cut(s) 1009
RseI CAYNNNNRTG 1 cut(s) 197
SapI GCTCTTC 2 cut(s) 75, 676
SaqAI TTAA 5 cut(s) 75, 531, 597, 738, 1195
SatI GCNGC 2 cut(s) 22, 882
Sau3AI GATC 4 cut(s) 171, 463, 949, 1006
Sau96I GGNCC 3 cut(s) 56, 356, 919
SchI GAGTC 2 cut(s) 870, 1007
ScrFI CCNGG 2 cut(s) 341, 1089
SfaNI GCATC 1 cut(s) 197
SinI GGWCC 2 cut(s) 56, 356
SmiMI CAYNNNNRTG 1 cut(s) 197
SphI GCATGC 1 cut(s) 125
Sse9I AATT 6 cut(s) 146, 772, 924, 987, 1031, 1070
SseBI AGGCCT 1 cut(s) 350
SsiI CCGC 5 cut(s) 19, 22, 235, 450, 1181
SspMI CTAG 2 cut(s) 318, 915
StuI AGGCCT 1 cut(s) 350
StyD4I CCNGG 2 cut(s) 339, 1087
StyI CCWWGG 1 cut(s) 1107
TaaI ACNGT 3 cut(s) 664, 816, 863
TaiI ACGT 1 cut(s) 1063
TaqI TCGA 5 cut(s) 168, 459, 872, 1005, 1009
TasI AATT 6 cut(s) 146, 772, 924, 987, 1031, 1070
TauI GCSGC 1 cut(s) 24
TfiI GAWTC 3 cut(s) 183, 446, 869
Tru1I TTAA 5 cut(s) 75, 531, 597, 738, 1195
Tru9I TTAA 5 cut(s) 75, 531, 597, 738, 1195
TscAI CASTG 1 cut(s) 937
TseFI GTSAC 2 cut(s) 26, 1061
TseI GCWGC 1 cut(s) 881
Tsp45I GTSAC 2 cut(s) 26, 1061
TspDTI ATGAA 5 cut(s) 17, 215, 654, 740, 959
TspGWI ACGGA 2 cut(s) 69, 378
TspRI CASTG 1 cut(s) 937
VpaK11BI GGWCC 2 cut(s) 56, 356
XagI CCTNNNNNAGG 1 cut(s) 344
XapI RAATTY 2 cut(s) 987, 1031
XceI RCATGY 1 cut(s) 125
XcmI CCANNNNNNNNNTGG 1 cut(s) 502
XmiI GTMKAC 2 cut(s) 308, 579
XspI CTAG 2 cut(s) 318, 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.