Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0022872

Physical Location & Seq

Genomic Coordinates Forward (+)

30001671 .. 30003087

Gene Structure 1417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008394

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCTATCCTTAGCTCGGACCAAGATGGCGTTTTCAAATCACTTTCAGATTCACTCCCAACGCATTGCACTATAAATATAGAGTCGTTTTCCTTGCTAGCTGAATATCATGGAGTCAACGGATATGAATCAAAAGAGTTCGATGCCGGAGGATACATATGGAAACTGGTGCTGTACCCAAATGGAAACAAGAAGAAGAATGTGGAAGACCACATCTCTGTCTACTTGTGCATAGCCGGAGAAGATTCACTGCAGACTGATGCTTTTACAAAGCAGAAGTGCTTTCATGCAGGGTTGCTTCATGTAGGTTTTGATAAGCTAATTATCTGTCTTAAAGAATTTACTGATGTTTCCAATGGATATCTCTTCGATGACAAGTGTGTATTTGGAGCTGAGGGGAAATTAAGGAACAGCATTTATGACCTTCTCGGAATTCGGATTAAGGTGTGCCCCCTGCCGCCGGAAGTTCCAAAGCCCCCTAAATACGAACTAAAGCCTTTTTTTGTTCGATTCCCCATCGTGCGTGATTTTTCACATGCTTCCCTCAAGGTCACCGGACCTCCCAGAACGATCATACCAGTCTTCAATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

198

Amino Acids

22.08

Weight (kDa)

6.58

Isoelectric Point (pI)

33.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	22 - 84	5e-14	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0022872)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008394
rosa_multiflora	Rmu_sc0004940.1_g000017 Rmu_sc0009599.1_g000018
rosa_samantha	Rh4CG300600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	222
AciI	CCGC	1 cut(s)	458
AcsI	RAATTY	2 cut(s)	338, 432
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	16, 460
AgsI	TTSAA	2 cut(s)	37, 586
AluBI	AGCT	4 cut(s)	15, 101, 319, 392
AluI	AGCT	4 cut(s)	15, 101, 319, 392
ApoI	RAATTY	2 cut(s)	338, 432
AspS9I	GGNCC	2 cut(s)	19, 557
AsuHPI	GGTGA	1 cut(s)	544
AsuNHI	GCTAGC	1 cut(s)	97
AvaII	GGWCC	2 cut(s)	19, 557
BaeGI	GKGCMC	1 cut(s)	452
BbsI	GAAGAC	2 cut(s)	213, 574
BbvCI	CCTCAGC	1 cut(s)	393
BccI	CCATC	2 cut(s)	20, 524
BciVI	GTATCC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	98
BfmI	CTRYAG	1 cut(s)	251
BfuI	GTATCC	1 cut(s)	146
BisI	GCNGC	1 cut(s)	458
BlsI	GCNGC	1 cut(s)	459
Bme18I	GGWCC	2 cut(s)	19, 557
BmgT120I	GGNCC	2 cut(s)	19, 557
BmsI	GCATC	2 cut(s)	133, 250
BmtI	GCTAGC	1 cut(s)	101
BpiI	GAAGAC	2 cut(s)	213, 574
Bpu10I	CCTNAGC	2 cut(s)	11, 393
BpuEI	CTTGAG	1 cut(s)	530
BsaBI	GATNNNNATC	1 cut(s)	127
BsaWI	WCCGGW	1 cut(s)	554
BsaXI	ACNNNNNCTCC	2 cut(s)	544, 574
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 460
Bse1I	ACTGG	2 cut(s)	171, 578
Bse3DI	GCAATG	1 cut(s)	64
Bse8I	GATNNNNATC	1 cut(s)	127
BseJI	GATNNNNATC	1 cut(s)	127
BseLI	CCNNNNNNNGG	2 cut(s)	16, 460
BseMI	GCAATG	1 cut(s)	64
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	2 cut(s)	171, 578
BseSI	GKGCMC	1 cut(s)	452
BsiSI	CCGG	4 cut(s)	147, 237, 461, 555
BslI	CCNNNNNNNGG	2 cut(s)	16, 460
Bsp1286I	GDGCHC	1 cut(s)	452
Bsp143I	GATC	1 cut(s)	570
BspACI	CCGC	1 cut(s)	458
BspCNI	CTCAG	1 cut(s)	385
BspMAI	CTGCAG	1 cut(s)	255
BspOI	GCTAGC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	64
BsrI	ACTGG	2 cut(s)	171, 578
BssMI	GATC	1 cut(s)	570
Bst6I	CTCTTC	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	99
BstDEI	CTNAG	2 cut(s)	11, 393
BstEII	GGTNACC	1 cut(s)	550
BstKTI	GATC	1 cut(s)	573
BstMBI	GATC	1 cut(s)	570
BstNSI	RCATGY	1 cut(s)	539
BstPI	GGTNACC	1 cut(s)	550
BstSFI	CTRYAG	1 cut(s)	251
BstSLI	GKGCMC	1 cut(s)	452
BstV2I	GAAGAC	2 cut(s)	213, 574
BsuI	GTATCC	1 cut(s)	146
BtsI	GCAGTG	1 cut(s)	248
BtsIMutI	CAGTG	1 cut(s)	248
Cac8I	GCNNGC	1 cut(s)	99
Cfr13I	GGNCC	2 cut(s)	19, 557
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	4 cut(s)	110, 287, 302, 536
CviJI	RGCY	8 cut(s)	5, 15, 101, 236, 319, 392, 475, 496
CviKI_1	RGCY	8 cut(s)	5, 15, 101, 236, 319, 392, 475, 496
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	2 cut(s)	11, 393
DpnI	GATC	1 cut(s)	572
DpnII	GATC	1 cut(s)	570
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
Eco32I	GATATC	1 cut(s)	362
Eco47I	GGWCC	2 cut(s)	19, 557
Eco91I	GGTNACC	1 cut(s)	550
EcoO65I	GGTNACC	1 cut(s)	550
EcoRI	GAATTC	1 cut(s)	432
EcoRV	GATATC	1 cut(s)	362
FaeI	CATG	4 cut(s)	113, 290, 305, 539
FatI	CATG	4 cut(s)	109, 286, 301, 535
FauNDI	CATATG	1 cut(s)	158
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	1 cut(s)	458
Fsp4HI	GCNGC	1 cut(s)	458
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	1 cut(s)	458
HapII	CCGG	4 cut(s)	147, 237, 461, 555
Hin1II	CATG	4 cut(s)	113, 290, 305, 539
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	6 cut(s)	50, 83, 114, 128, 245, 510
HpaII	CCGG	4 cut(s)	147, 237, 461, 555
HphI	GGTGA	1 cut(s)	544
Hpy166II	GTNNAC	2 cut(s)	118, 223
Hpy188I	TCNGA	4 cut(s)	19, 49, 431, 438
Hpy8I	GTNNAC	2 cut(s)	118, 223
HpyAV	CCTTC	1 cut(s)	434
HpyCH4V	TGCA	4 cut(s)	69, 231, 253, 290
HpyF3I	CTNAG	2 cut(s)	11, 393
Hsp92II	CATG	4 cut(s)	113, 290, 305, 539
Kzo9I	GATC	1 cut(s)	570
LmnI	GCTCC	1 cut(s)	389
LpnPI	CCDG	8 cut(s)	152, 160, 250, 276, 467, 474, 568, 577
LweI	GCATC	2 cut(s)	133, 250
MaeI	CTAG	1 cut(s)	98
MaeIII	GTNAC	1 cut(s)	550
MalI	GATC	1 cut(s)	572
MboI	GATC	1 cut(s)	570
MboII	GAAGA	6 cut(s)	205, 208, 218, 254, 358, 574
MhlI	GDGCHC	1 cut(s)	452
MluCI	AATT	4 cut(s)	321, 338, 401, 432
MlyI	GAGTC	2 cut(s)	92, 123
MnlI	CCTC	4 cut(s)	143, 388, 554, 570
MseI	TTAA	3 cut(s)	333, 404, 441
MspI	CCGG	4 cut(s)	147, 237, 461, 555
NdeI	CATATG	1 cut(s)	158
NdeII	GATC	1 cut(s)	570
NheI	GCTAGC	1 cut(s)	97
NlaIII	CATG	4 cut(s)	113, 290, 305, 539
NmuCI	GTSAC	1 cut(s)	550
NspI	RCATGY	1 cut(s)	539
PfeI	GAWTC	4 cut(s)	50, 128, 245, 510
PkrI	GCNGC	1 cut(s)	459
PleI	GAGTC	2 cut(s)	91, 122
PpsI	GAGTC	2 cut(s)	91, 122
PspEI	GGTNACC	1 cut(s)	550
PspPI	GGNCC	2 cut(s)	19, 557
PstI	CTGCAG	1 cut(s)	255
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SaqAI	TTAA	3 cut(s)	333, 404, 441
SatI	GCNGC	1 cut(s)	458
Sau3AI	GATC	1 cut(s)	570
Sau96I	GGNCC	2 cut(s)	19, 557
SchI	GAGTC	2 cut(s)	92, 123
SduI	GDGCHC	1 cut(s)	452
SetI	ASST	9 cut(s)	17, 103, 310, 321, 394, 426, 447, 552, 562
SfaNI	GCATC	2 cut(s)	133, 250
SfcI	CTRYAG	1 cut(s)	251
SinI	GGWCC	2 cut(s)	19, 557
SmlI	CTYRAG	1 cut(s)	545
SmoI	CTYRAG	1 cut(s)	545
Sse9I	AATT	4 cut(s)	321, 338, 401, 432
SsiI	CCGC	1 cut(s)	458
SspMI	CTAG	1 cut(s)	98
TaqI	TCGA	3 cut(s)	141, 369, 508
TasI	AATT	4 cut(s)	321, 338, 401, 432
TauI	GCSGC	1 cut(s)	460
TfiI	GAWTC	4 cut(s)	50, 128, 245, 510
Tru1I	TTAA	3 cut(s)	333, 404, 441
Tru9I	TTAA	3 cut(s)	333, 404, 441
TscAI	CASTG	1 cut(s)	255
TseFI	GTSAC	1 cut(s)	550
Tsp45I	GTSAC	1 cut(s)	550
TspDTI	ATGAA	3 cut(s)	141, 275, 290
TspGWI	ACGGA	1 cut(s)	135
TspRI	CASTG	1 cut(s)	255
VpaK11BI	GGWCC	2 cut(s)	19, 557
XapI	RAATTY	2 cut(s)	338, 432
XceI	RCATGY	1 cut(s)	539
XmiI	GTMKAC	1 cut(s)	222
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.