Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004940.1

Orthogroup ID

OG0022872

Physical Location & Seq

Genomic Coordinates Forward (+)

86195 .. 87628

Gene Structure 1434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004940.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atggctatccttaactcggaccaagacggcgttttcagatcactttcagattcactgccaactcattgcactctaagtatagagtcgtttcccttgctaactgaatatcatggagtcgatggatatgaatcaaaagagtttgaagccggaggatacatatggaaactggtgctgtacccaaatggaaacaagaagaagaatgtggaagaccacatctctgtctacttgcgcatagccggagaagattcacttcagactggtcggggagtatctgttgattttagattgtttttgcttgatcagaataagggaacgattatagtactctatcccgtgggaaatcgcgaggggaaagattctcatctttctctctacttgggattggctgataaacaaacaactcctactgtcactagagtatatgcagagttttccttacgcatagtaaatcaaaaccgtgccagccatcaatctggtccagattcttcttctatagatgagatatgtttcatcactgccgcagagaccactgttcttgggattgctaaagaacccccagaggcagaggacattgtccatacaactggggaggagggttcatgcaggttccccttcaattcgtcttttcttctcatgcccttgtccaccctcgtcattgtgctcaatctacttcggatggccaggttgagccatacaataatcatgagcgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

237

Amino Acids

26.21

Weight (kDa)

5.23

Isoelectric Point (pI)

42.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022872)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008394
rosa_multiflora	Rmu_sc0004940.1_g000017 Rmu_sc0009599.1_g000018
rosa_samantha	Rh4CG300600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	230
Acc36I	ACCTGC	1 cut(s)	594
AccI	GTMKAC	1 cut(s)	222
AccII	CGCG	1 cut(s)	345
AciI	CCGC	1 cut(s)	519
AcoI	YGGCCR	1 cut(s)	678
AcuI	CTGAAG	1 cut(s)	236
AfaI	GTAC	2 cut(s)	176, 324
AfiI	CCNNNNNNNGG	1 cut(s)	16
AgsI	TTSAA	2 cut(s)	143, 616
AjnI	CCWGG	1 cut(s)	680
Alw21I	GWGCWC	1 cut(s)	663
Alw26I	GTCTC	1 cut(s)	518
AoxI	GGCC	1 cut(s)	678
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	2 cut(s)	19, 476
AvaII	GGWCC	2 cut(s)	19, 476
BalI	TGGCCA	1 cut(s)	680
BbsI	GAAGAC	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	663
BccI	CCATC	3 cut(s)	113, 474, 670
BceAI	ACGGC	1 cut(s)	43
BciT130I	CCWGG	1 cut(s)	682
BciVI	GTATCC	1 cut(s)	146
BclI	TGATCA	1 cut(s)	298
BcoDI	GTCTC	1 cut(s)	518
BfaI	CTAG	2 cut(s)	414, 712
BfmI	CTRYAG	1 cut(s)	492
BfuAI	ACCTGC	1 cut(s)	594
BfuI	GTATCC	1 cut(s)	146
BisI	GCNGC	1 cut(s)	519
BlsI	GCNGC	1 cut(s)	520
BmcAI	AGTACT	1 cut(s)	324
Bme1390I	CCNGG	1 cut(s)	682
Bme18I	GGWCC	2 cut(s)	19, 476
BmgT120I	GGNCC	2 cut(s)	19, 476
BmiI	GGNNCC	1 cut(s)	608
BmrFI	CCNGG	1 cut(s)	682
BmrI	ACTGGG	1 cut(s)	594
BmuI	ACTGGG	1 cut(s)	594
BpiI	GAAGAC	1 cut(s)	213
BsaBI	GATNNNNATC	2 cut(s)	127, 360
BsaI	GGTCTC	1 cut(s)	518
BsaJI	CCNNGG	1 cut(s)	333
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse1I	ACTGG	3 cut(s)	171, 262, 589
Bse3DI	GCAATG	1 cut(s)	64
Bse8I	GATNNNNATC	2 cut(s)	127, 360
BseBI	CCWGG	1 cut(s)	682
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	1 cut(s)	681
BseJI	GATNNNNATC	2 cut(s)	127, 360
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMI	GCAATG	1 cut(s)	64
BseNI	ACTGG	3 cut(s)	171, 262, 589
BseRI	GAGGAG	1 cut(s)	605
Bsh1236I	CGCG	1 cut(s)	345
BshFI	GGCC	1 cut(s)	680
BsiHKAI	GWGCWC	1 cut(s)	663
BsiSI	CCGG	2 cut(s)	147, 237
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	1 cut(s)	518
BsnI	GGCC	1 cut(s)	680
Bso31I	GGTCTC	1 cut(s)	518
Bsp1286I	GDGCHC	1 cut(s)	663
Bsp143I	GATC	2 cut(s)	38, 298
Bsp68I	TCGCGA	1 cut(s)	345
BspACI	CCGC	1 cut(s)	519
BspANI	GGCC	1 cut(s)	680
BspFNI	CGCG	1 cut(s)	345
BspHI	TCATGA	1 cut(s)	702
BspLI	GGNNCC	1 cut(s)	608
BspMI	ACCTGC	1 cut(s)	594
BspTNI	GGTCTC	1 cut(s)	518
BsrDI	GCAATG	1 cut(s)	64
BsrI	ACTGG	3 cut(s)	171, 262, 589
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	2 cut(s)	38, 298
Bst2UI	CCWGG	1 cut(s)	682
Bst4CI	ACNGT	3 cut(s)	409, 458, 532
BstC8I	GCNNGC	1 cut(s)	463
BstDEI	CTNAG	1 cut(s)	74
BstDSI	CCRYGG	1 cut(s)	333
BstF5I	GGATG	1 cut(s)	681
BstFNI	CGCG	1 cut(s)	345
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	2 cut(s)	41, 301
BstMAI	GTCTC	1 cut(s)	518
BstMBI	GATC	2 cut(s)	38, 298
BstNI	CCWGG	1 cut(s)	682
BstSCI	CCNGG	1 cut(s)	680
BstSFI	CTRYAG	1 cut(s)	492
BstUI	CGCG	1 cut(s)	345
BstV2I	GAAGAC	1 cut(s)	213
BstXI	CCANNNNNNTGG	2 cut(s)	473, 584
BsuI	GTATCC	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	680
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	1 cut(s)	681
BtsI	GCAGTG	2 cut(s)	53, 513
BtsIMutI	CAGTG	3 cut(s)	53, 513, 528
BtuMI	TCGCGA	1 cut(s)	345
BveI	ACCTGC	1 cut(s)	594
Cac8I	GCNNGC	1 cut(s)	463
CciI	TCATGA	1 cut(s)	702
CfoI	GCGC	1 cut(s)	231
Cfr13I	GGNCC	2 cut(s)	19, 476
CseI	GACGC	1 cut(s)	697
Csp6I	GTAC	2 cut(s)	175, 323
CspCI	CAANNNNNGTGG	2 cut(s)	517, 552
CviAII	CATG	4 cut(s)	110, 600, 634, 703
CviJI	RGCY	7 cut(s)	5, 146, 236, 386, 465, 680, 690
CviKI_1	RGCY	7 cut(s)	5, 146, 236, 386, 465, 680, 690
CviQI	GTAC	2 cut(s)	175, 323
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	2 cut(s)	40, 300
DpnII	GATC	2 cut(s)	38, 298
EaeI	YGGCCR	1 cut(s)	678
Eco31I	GGTCTC	1 cut(s)	518
Eco47I	GGWCC	2 cut(s)	19, 476
Eco57I	CTGAAG	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	680
FaeI	CATG	4 cut(s)	113, 603, 637, 706
FalI	AAGNNNNNCTT	2 cut(s)	234, 266
FatI	CATG	4 cut(s)	109, 599, 633, 702
FauNDI	CATATG	1 cut(s)	158
FbaI	TGATCA	1 cut(s)	298
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	1 cut(s)	519
FokI	GGATG	1 cut(s)	688
Fsp4HI	GCNGC	1 cut(s)	519
FspBI	CTAG	2 cut(s)	414, 712
FspI	TGCGCA	1 cut(s)	230
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	1 cut(s)	519
HaeIII	GGCC	1 cut(s)	680
HapII	CCGG	2 cut(s)	147, 237
HgaI	GACGC	1 cut(s)	697
HhaI	GCGC	1 cut(s)	231
Hin1II	CATG	4 cut(s)	113, 603, 637, 706
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HinfI	GANTC	7 cut(s)	50, 83, 114, 128, 245, 356, 482
HpaII	CCGG	2 cut(s)	147, 237
Hpy166II	GTNNAC	2 cut(s)	223, 645
Hpy188I	TCNGA	6 cut(s)	19, 38, 49, 255, 303, 675
Hpy188III	TCNNGA	3 cut(s)	344, 479, 703
Hpy8I	GTNNAC	2 cut(s)	223, 645
HpyAV	CCTTC	1 cut(s)	622
HpyCH4III	ACNGT	3 cut(s)	409, 458, 532
HpyCH4V	TGCA	3 cut(s)	69, 425, 603
HpyF3I	CTNAG	1 cut(s)	74
Hsp92II	CATG	4 cut(s)	113, 603, 637, 706
HspAI	GCGC	1 cut(s)	229
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	2 cut(s)	38, 298
MaeI	CTAG	2 cut(s)	414, 712
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	2 cut(s)	40, 300
MboI	GATC	2 cut(s)	38, 298
MboII	GAAGA	7 cut(s)	205, 208, 218, 254, 477, 480, 620
MhlI	GDGCHC	1 cut(s)	663
MlsI	TGGCCA	1 cut(s)	680
MluCI	AATT	1 cut(s)	616
MluNI	TGGCCA	1 cut(s)	680
MlyI	GAGTC	2 cut(s)	92, 123
MnlI	CCTC	7 cut(s)	143, 340, 553, 559, 583, 586, 659
Mox20I	TGGCCA	1 cut(s)	680
MscI	TGGCCA	1 cut(s)	680
MseI	TTAA	1 cut(s)	12
Msp20I	TGGCCA	1 cut(s)	680
MspI	CCGG	2 cut(s)	147, 237
MspR9I	CCNGG	1 cut(s)	682
MvaI	CCWGG	1 cut(s)	682
MvnI	CGCG	1 cut(s)	345
NdeI	CATATG	1 cut(s)	158
NdeII	GATC	2 cut(s)	38, 298
NlaIII	CATG	4 cut(s)	113, 603, 637, 706
NlaIV	GGNNCC	1 cut(s)	608
NmuCI	GTSAC	1 cut(s)	409
NruI	TCGCGA	1 cut(s)	345
NsbI	TGCGCA	1 cut(s)	230
PagI	TCATGA	1 cut(s)	702
PfeI	GAWTC	5 cut(s)	50, 128, 245, 356, 482
PflFI	GACNNNGTC	1 cut(s)	572
PkrI	GCNGC	1 cut(s)	520
PleI	GAGTC	2 cut(s)	91, 122
PpsI	GAGTC	2 cut(s)	91, 122
Psp6I	CCWGG	1 cut(s)	680
PspGI	CCWGG	1 cut(s)	680
PspN4I	GGNNCC	1 cut(s)	608
PspPI	GGNCC	2 cut(s)	19, 476
PsyI	GACNNNGTC	1 cut(s)	572
RruI	TCGCGA	1 cut(s)	345
RsaI	GTAC	2 cut(s)	176, 324
RsaNI	GTAC	2 cut(s)	175, 323
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	1 cut(s)	519
Sau3AI	GATC	2 cut(s)	38, 298
Sau96I	GGNCC	2 cut(s)	19, 476
ScaI	AGTACT	1 cut(s)	324
SchI	GAGTC	2 cut(s)	92, 123
ScrFI	CCNGG	1 cut(s)	682
SduI	GDGCHC	1 cut(s)	663
SetI	ASST	2 cut(s)	608, 686
SfcI	CTRYAG	1 cut(s)	492
SinI	GGWCC	2 cut(s)	19, 476
Sse9I	AATT	1 cut(s)	616
SsiI	CCGC	1 cut(s)	519
SspMI	CTAG	2 cut(s)	414, 712
StyD4I	CCNGG	1 cut(s)	680
TaaI	ACNGT	3 cut(s)	409, 458, 532
TaqI	TCGA	1 cut(s)	117
TasI	AATT	1 cut(s)	616
TatI	WGTACW	1 cut(s)	322
TauI	GCSGC	1 cut(s)	521
TfiI	GAWTC	5 cut(s)	50, 128, 245, 356, 482
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	3 cut(s)	60, 520, 535
TseFI	GTSAC	1 cut(s)	409
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	3 cut(s)	141, 499, 588
TspRI	CASTG	3 cut(s)	60, 520, 535
Tth111I	GACNNNGTC	1 cut(s)	572
VpaK11BI	GGWCC	2 cut(s)	19, 476
XmiI	GTMKAC	1 cut(s)	222
XspI	CTAG	2 cut(s)	414, 712
ZrmI	AGTACT	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.