Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0022872

Physical Location & Seq

Genomic Coordinates Reverse (-)

56098506 .. 56099150

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG300600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGCTATCCTTAACTCGGACCAAGACGGCGTTTTCAGATCACTTTCAGATTCACTGCCAACTTATTGCAGTCTAAGTATAGAGTCGTTTCCCTTGCTAACTGAATATCATGGAGTCGATGGATATGAATCAAAAGAGTTTGAAGCCGGAGGATACATATGGAAACTGGTGCTGTACCCAAATGGAAACAAGAAGAAGAATGTGGAAGACCACATCTCTGTCTACTTTCGCATAGCCGGAGAAGATTCACTTCAGACTGGTCGGGGAATCAAGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

92

Amino Acids

10.31

Weight (kDa)

5.0

Isoelectric Point (pI)

44.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	25 - 83	1.2e-12	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0022872)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008394
rosa_multiflora	Rmu_sc0004940.1_g000017 Rmu_sc0009599.1_g000018
rosa_samantha	Rh4CG300600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	222
AcuI	CTGAAG	1 cut(s)	236
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	1 cut(s)	16
AgsI	TTSAA	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	19
AvaII	GGWCC	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	213
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	1 cut(s)	43
BciVI	GTATCC	1 cut(s)	146
BfuI	GTATCC	1 cut(s)	146
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	19
BpiI	GAAGAC	1 cut(s)	213
BsaBI	GATNNNNATC	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse1I	ACTGG	2 cut(s)	171, 262
Bse8I	GATNNNNATC	1 cut(s)	127
BseJI	GATNNNNATC	1 cut(s)	127
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseNI	ACTGG	2 cut(s)	171, 262
BsiSI	CCGG	2 cut(s)	147, 237
BslI	CCNNNNNNNGG	1 cut(s)	16
Bsp143I	GATC	1 cut(s)	38
BsrI	ACTGG	2 cut(s)	171, 262
BssMI	GATC	1 cut(s)	38
BstDEI	CTNAG	1 cut(s)	74
BstKTI	GATC	1 cut(s)	41
BstMBI	GATC	1 cut(s)	38
BstV2I	GAAGAC	1 cut(s)	213
BsuI	GTATCC	1 cut(s)	146
BtsI	GCAGTG	1 cut(s)	53
BtsIMutI	CAGTG	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	19
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	1 cut(s)	110
CviJI	RGCY	3 cut(s)	5, 146, 236
CviKI_1	RGCY	3 cut(s)	5, 146, 236
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	1 cut(s)	40
DpnII	GATC	1 cut(s)	38
Eco47I	GGWCC	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	236
FaeI	CATG	1 cut(s)	113
FaiI	YATR	7 cut(s)	80, 111, 126, 158, 160, 233, 277
FalI	AAGNNNNNCTT	2 cut(s)	234, 266
FatI	CATG	1 cut(s)	109
FauNDI	CATATG	1 cut(s)	158
FblI	GTMKAC	1 cut(s)	222
HapII	CCGG	2 cut(s)	147, 237
Hin1II	CATG	1 cut(s)	113
HinfI	GANTC	6 cut(s)	50, 83, 114, 128, 245, 267
HpaII	CCGG	2 cut(s)	147, 237
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	4 cut(s)	19, 38, 49, 255
Hpy188III	TCNNGA	1 cut(s)	271
Hpy8I	GTNNAC	1 cut(s)	223
HpyCH4V	TGCA	1 cut(s)	69
HpyF3I	CTNAG	1 cut(s)	74
Hsp92II	CATG	1 cut(s)	113
Kzo9I	GATC	1 cut(s)	38
LpnPI	CCDG	4 cut(s)	152, 160, 243, 250
MalI	GATC	1 cut(s)	40
MboI	GATC	1 cut(s)	38
MboII	GAAGA	4 cut(s)	205, 208, 218, 254
MlyI	GAGTC	2 cut(s)	92, 123
MnlI	CCTC	1 cut(s)	143
MseI	TTAA	1 cut(s)	12
MspI	CCGG	2 cut(s)	147, 237
NdeI	CATATG	1 cut(s)	158
NdeII	GATC	1 cut(s)	38
NlaIII	CATG	1 cut(s)	113
PfeI	GAWTC	4 cut(s)	50, 128, 245, 267
PleI	GAGTC	2 cut(s)	91, 122
PpsI	GAGTC	2 cut(s)	91, 122
PspPI	GGNCC	1 cut(s)	19
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SaqAI	TTAA	1 cut(s)	12
Sau3AI	GATC	1 cut(s)	38
Sau96I	GGNCC	1 cut(s)	19
SchI	GAGTC	2 cut(s)	92, 123
SinI	GGWCC	1 cut(s)	19
TaqI	TCGA	1 cut(s)	117
TfiI	GAWTC	4 cut(s)	50, 128, 245, 267
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	1 cut(s)	60
TspDTI	ATGAA	1 cut(s)	141
TspRI	CASTG	1 cut(s)	60
VpaK11BI	GGWCC	1 cut(s)	19
XmiI	GTMKAC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.