RNA polymerase II-associated protein
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0169481 RchiOBHm_Chr2g0174901 |
| rosa_laevigata | RLG00000008426 |
| rosa_samantha | Rh2CG409800 Rh6AG075900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 159, 203 |
| AcsI | RAATTY | 1 cut(s) | 250 |
| AcuI | CTGAAG | 2 cut(s) | 45, 80 |
| AdeI | CACNNNGTG | 1 cut(s) | 287 |
| AfaI | GTAC | 1 cut(s) | 238 |
| AgsI | TTSAA | 3 cut(s) | 29, 250, 343 |
| AjiI | CACGTC | 1 cut(s) | 287 |
| AluBI | AGCT | 3 cut(s) | 194, 296, 347 |
| AluI | AGCT | 3 cut(s) | 194, 296, 347 |
| Alw26I | GTCTC | 1 cut(s) | 218 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 188 |
| AoxI | GGCC | 1 cut(s) | 243 |
| ApoI | RAATTY | 1 cut(s) | 250 |
| AsuHPI | GGTGA | 1 cut(s) | 125 |
| BauI | CACGAG | 1 cut(s) | 215 |
| BccI | CCATC | 2 cut(s) | 57, 62 |
| BcoDI | GTCTC | 1 cut(s) | 218 |
| BfaI | CTAG | 1 cut(s) | 297 |
| BfmI | CTRYAG | 2 cut(s) | 85, 189 |
| BglII | AGATCT | 1 cut(s) | 99 |
| BmgBI | CACGTC | 1 cut(s) | 287 |
| BmrI | ACTGGG | 1 cut(s) | 317 |
| BmuI | ACTGGG | 1 cut(s) | 317 |
| BsaI | GGTCTC | 1 cut(s) | 218 |
| Bse1I | ACTGG | 1 cut(s) | 312 |
| Bse3DI | GCAATG | 1 cut(s) | 79 |
| BseGI | GGATG | 2 cut(s) | 49, 262 |
| BseMI | GCAATG | 1 cut(s) | 79 |
| BseMII | CTCAG | 1 cut(s) | 231 |
| BseNI | ACTGG | 1 cut(s) | 312 |
| BshFI | GGCC | 1 cut(s) | 245 |
| BsmAI | GTCTC | 1 cut(s) | 218 |
| BsnI | GGCC | 1 cut(s) | 245 |
| Bso31I | GGTCTC | 1 cut(s) | 218 |
| Bsp143I | GATC | 2 cut(s) | 99, 259 |
| BspACI | CCGC | 2 cut(s) | 159, 203 |
| BspANI | GGCC | 1 cut(s) | 245 |
| BspCNI | CTCAG | 1 cut(s) | 232 |
| BspTNI | GGTCTC | 1 cut(s) | 218 |
| BsrDI | GCAATG | 1 cut(s) | 79 |
| BsrI | ACTGG | 1 cut(s) | 312 |
| BssMI | GATC | 2 cut(s) | 99, 259 |
| BssSI | CACGAG | 1 cut(s) | 215 |
| Bst2BI | CACGAG | 1 cut(s) | 215 |
| Bst4CI | ACNGT | 1 cut(s) | 236 |
| BstDEI | CTNAG | 1 cut(s) | 240 |
| BstF5I | GGATG | 2 cut(s) | 49, 262 |
| BstKTI | GATC | 2 cut(s) | 102, 262 |
| BstMAI | GTCTC | 1 cut(s) | 218 |
| BstMBI | GATC | 2 cut(s) | 99, 259 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 200 |
| BstSFI | CTRYAG | 2 cut(s) | 85, 189 |
| BstX2I | RGATCY | 1 cut(s) | 99 |
| BstYI | RGATCY | 1 cut(s) | 99 |
| BsuRI | GGCC | 1 cut(s) | 245 |
| BtgZI | GCGATG | 1 cut(s) | 40 |
| BtrI | CACGTC | 1 cut(s) | 287 |
| BtsCI | GGATG | 2 cut(s) | 49, 262 |
| BtsI | GCAGTG | 1 cut(s) | 189 |
| BtsIMutI | CAGTG | 1 cut(s) | 189 |
| CaiI | CAGNNNCTG | 1 cut(s) | 188 |
| Csp6I | GTAC | 1 cut(s) | 237 |
| CviJI | RGCY | 9 cut(s) | 143, 153, 171, 188, 194, 224, 245, 296, 347 |
| CviKI_1 | RGCY | 9 cut(s) | 143, 153, 171, 188, 194, 224, 245, 296, 347 |
| CviQI | GTAC | 1 cut(s) | 237 |
| DdeI | CTNAG | 1 cut(s) | 240 |
| DpnI | GATC | 2 cut(s) | 101, 261 |
| DpnII | GATC | 2 cut(s) | 99, 259 |
| DraIII | CACNNNGTG | 1 cut(s) | 287 |
| EciI | GGCGGA | 1 cut(s) | 218 |
| Eco147I | AGGCCT | 1 cut(s) | 245 |
| Eco31I | GGTCTC | 1 cut(s) | 218 |
| Eco57I | CTGAAG | 2 cut(s) | 45, 80 |
| FaiI | YATR | 4 cut(s) | 267, 269, 277, 356 |
| FokI | GGATG | 2 cut(s) | 36, 269 |
| FspBI | CTAG | 1 cut(s) | 297 |
| HaeIII | GGCC | 1 cut(s) | 245 |
| HinfI | GANTC | 2 cut(s) | 176, 323 |
| HphI | GGTGA | 1 cut(s) | 125 |
| Hpy188I | TCNGA | 2 cut(s) | 99, 362 |
| Hpy188III | TCNNGA | 2 cut(s) | 217, 282 |
| Hpy99I | CGWCG | 1 cut(s) | 288 |
| HpyAV | CCTTC | 1 cut(s) | 84 |
| HpyCH4III | ACNGT | 1 cut(s) | 236 |
| HpyCH4IV | ACGT | 1 cut(s) | 286 |
| HpyCH4V | TGCA | 1 cut(s) | 290 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 200 |
| HpyF3I | CTNAG | 1 cut(s) | 240 |
| HpySE526I | ACGT | 1 cut(s) | 286 |
| Kzo9I | GATC | 2 cut(s) | 99, 259 |
| LpnPI | CCDG | 2 cut(s) | 48, 293 |
| MaeI | CTAG | 1 cut(s) | 297 |
| MaeII | ACGT | 1 cut(s) | 286 |
| MaeIII | GTNAC | 1 cut(s) | 119 |
| MalI | GATC | 2 cut(s) | 101, 261 |
| MboI | GATC | 2 cut(s) | 99, 259 |
| MboII | GAAGA | 1 cut(s) | 86 |
| MflI | RGATCY | 1 cut(s) | 99 |
| MluCI | AATT | 1 cut(s) | 250 |
| MnlI | CCTC | 4 cut(s) | 193, 199, 235, 325 |
| MseI | TTAA | 1 cut(s) | 318 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 200 |
| NdeII | GATC | 2 cut(s) | 99, 259 |
| NmeAIII | GCCGAG | 1 cut(s) | 250 |
| PceI | AGGCCT | 1 cut(s) | 245 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 222 |
| PfeI | GAWTC | 2 cut(s) | 176, 323 |
| PstNI | CAGNNNCTG | 1 cut(s) | 188 |
| PsuI | RGATCY | 1 cut(s) | 99 |
| RsaI | GTAC | 1 cut(s) | 238 |
| RsaNI | GTAC | 1 cut(s) | 237 |
| SaqAI | TTAA | 1 cut(s) | 318 |
| Sau3AI | GATC | 2 cut(s) | 99, 259 |
| SetI | ASST | 5 cut(s) | 196, 210, 289, 298, 349 |
| SfcI | CTRYAG | 2 cut(s) | 85, 189 |
| Sse9I | AATT | 1 cut(s) | 250 |
| SseBI | AGGCCT | 1 cut(s) | 245 |
| SsiI | CCGC | 2 cut(s) | 159, 203 |
| SspI | AATATT | 1 cut(s) | 9 |
| SspMI | CTAG | 1 cut(s) | 297 |
| StuI | AGGCCT | 1 cut(s) | 245 |
| TaaI | ACNGT | 1 cut(s) | 236 |
| TaiI | ACGT | 1 cut(s) | 289 |
| TaqI | TCGA | 2 cut(s) | 146, 174 |
| TasI | AATT | 1 cut(s) | 250 |
| TatI | WGTACW | 1 cut(s) | 236 |
| TfiI | GAWTC | 2 cut(s) | 176, 323 |
| Tru1I | TTAA | 1 cut(s) | 318 |
| Tru9I | TTAA | 1 cut(s) | 318 |
| TscAI | CASTG | 1 cut(s) | 189 |
| TspRI | CASTG | 1 cut(s) | 189 |
| XapI | RAATTY | 1 cut(s) | 250 |
| XspI | CTAG | 1 cut(s) | 297 |