Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0020631

Physical Location & Seq

Genomic Coordinates Forward (+)

46278407 .. 46279087

Gene Structure 681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009085

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGTAAAAACCAAAGAGCTAAATGGGCAATCCGACCCTGTTGCTCAGACCCTGAGAATGGACGGCGGGAATCCATTGATCCGTCAAGTCGTGGACGGCGACAATGAAGGCCGCCACCACGGTCACGACGGCGAGCGGATGCACAGAGCCAAGCACCACTTCTCGCTGTTGAAGCGCAAATTCTACAAGTCGTACGCGAGCGATGAGAAGCAGGACTACAGGTTCGAGGTGTTGAAGAACAACATGAGGAAGGCGAAGAGGCACCAGCGATTGGCTCAAACGGCCCAACACGGCGTGCGGCCGGAAGGGAAGCAACACAGGTCTGGGAAAGGTACTGGGACTGATTGGATGGTTGGAGCAGGTTTTGGGCCTTTGTTTGGGCCGCGTCTAGAGCTGACCATTGATTTCGGCTTGGATATGGGCCCAACTATTATGAAAGAAGAACACATGAGAAGTTTTCGGTTTTTAAGCGAAAGAATGCATGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0070011 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04142 ko04210 map04142 map04210

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

164

Amino Acids

18.82

Weight (kDa)

9.88

Isoelectric Point (pI)

36.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020631)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000009085
rosa_multiflora	Rmu_sc0004191.1_g000053 Rmu_sc0004483.1_g000003
rosa_samantha	Rh1CG191400 Rh4DG005500 Rh7BG356900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	350
AccB1I	GGYRCC	1 cut(s)	261
AccB7I	CCANNNNNTGG	1 cut(s)	271
AccBSI	CCGCTC	1 cut(s)	136
AccII	CGCG	2 cut(s)	197, 385
AciI	CCGC	5 cut(s)	66, 112, 136, 298, 383
AclWI	GGATC	1 cut(s)	73
AcoI	YGGCCR	1 cut(s)	299
AcsI	RAATTY	1 cut(s)	179
AdeI	CACNNNGTG	1 cut(s)	295
AfaI	GTAC	2 cut(s)	194, 334
AfiI	CCNNNNNNNGG	3 cut(s)	58, 271, 377
AgsI	TTSAA	2 cut(s)	172, 235
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AloI	GAACNNNNNNTCC	2 cut(s)	206, 238
AluBI	AGCT	2 cut(s)	19, 394
AluI	AGCT	2 cut(s)	19, 394
AlwI	GGATC	1 cut(s)	73
AlwNI	CAGNNNCTG	1 cut(s)	52
AoxI	GGCC	6 cut(s)	109, 282, 299, 368, 380, 421
ApaI	GGGCCC	1 cut(s)	425
ApoI	RAATTY	1 cut(s)	179
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
AspLEI	GCGC	1 cut(s)	177
AspS9I	GGNCC	5 cut(s)	283, 368, 380, 421, 422
BaeGI	GKGCMC	1 cut(s)	425
BanI	GGYRCC	1 cut(s)	261
BanII	GRGCYC	1 cut(s)	425
BarI	GAAGNNNNNNTAC	2 cut(s)	200, 232
BccI	CCATC	1 cut(s)	343
BceAI	ACGGC	5 cut(s)	79, 112, 145, 297, 307
BcgI	CGANNNNNNTGC	2 cut(s)	23, 57
BfaI	CTAG	1 cut(s)	389
BfmI	CTRYAG	1 cut(s)	217
BfuAI	ACCTGC	1 cut(s)	350
BisI	GCNGC	3 cut(s)	112, 299, 383
BlsI	GCNGC	3 cut(s)	113, 300, 384
BmgT120I	GGNCC	5 cut(s)	283, 368, 380, 421, 422
BmiI	GGNNCC	2 cut(s)	263, 423
BmrI	ACTGGG	1 cut(s)	345
BmsI	GCATC	1 cut(s)	129
BmuI	ACTGGG	1 cut(s)	345
BsaJI	CCNNGG	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 271, 377
Bse1I	ACTGG	1 cut(s)	340
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	2 cut(s)	144, 354
BseLI	CCNNNNNNNGG	3 cut(s)	58, 271, 377
BseMII	CTCAG	2 cut(s)	44, 59
BseNI	ACTGG	1 cut(s)	340
BseSI	GKGCMC	1 cut(s)	425
BseX3I	CGGCCG	1 cut(s)	299
Bsh1236I	CGCG	2 cut(s)	197, 385
Bsh1285I	CGRYCG	1 cut(s)	302
BshFI	GGCC	6 cut(s)	111, 284, 301, 370, 382, 423
BshNI	GGYRCC	1 cut(s)	261
BsiEI	CGRYCG	1 cut(s)	302
BsiSI	CCGG	1 cut(s)	302
BsiWI	CGTACG	1 cut(s)	192
BslFI	GGGAC	1 cut(s)	352
BslI	CCNNNNNNNGG	3 cut(s)	58, 271, 377
BsmFI	GGGAC	1 cut(s)	352
BsmI	GAATGC	1 cut(s)	483
BsnI	GGCC	6 cut(s)	111, 284, 301, 370, 382, 423
Bsp120I	GGGCCC	1 cut(s)	421
Bsp1286I	GDGCHC	1 cut(s)	425
Bsp143I	GATC	1 cut(s)	78
BspACI	CCGC	5 cut(s)	66, 112, 136, 298, 383
BspANI	GGCC	6 cut(s)	111, 284, 301, 370, 382, 423
BspCNI	CTCAG	2 cut(s)	45, 58
BspFNI	CGCG	2 cut(s)	197, 385
BspLI	GGNNCC	2 cut(s)	263, 423
BspMI	ACCTGC	1 cut(s)	350
BspPI	GGATC	1 cut(s)	73
BspT107I	GGYRCC	1 cut(s)	261
BsrBI	CCGCTC	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	340
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	122
Bst6I	CTCTTC	1 cut(s)	251
BstC8I	GCNNGC	3 cut(s)	134, 199, 296
BstDEI	CTNAG	2 cut(s)	45, 53
BstDSI	CCRYGG	1 cut(s)	118
BstF5I	GGATG	2 cut(s)	144, 354
BstFNI	CGCG	2 cut(s)	197, 385
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	1 cut(s)	81
BstMBI	GATC	1 cut(s)	78
BstMCI	CGRYCG	1 cut(s)	302
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 172, 281, 391
BstSFI	CTRYAG	1 cut(s)	217
BstSLI	GKGCMC	1 cut(s)	425
BstUI	CGCG	2 cut(s)	197, 385
BstZI	CGGCCG	1 cut(s)	299
BsuRI	GGCC	6 cut(s)	111, 284, 301, 370, 382, 423
BtgI	CCRYGG	1 cut(s)	118
BtgZI	GCGATG	1 cut(s)	216
BtsCI	GGATG	2 cut(s)	144, 354
BveI	ACCTGC	1 cut(s)	350
Cac8I	GCNNGC	3 cut(s)	134, 199, 296
CaiI	CAGNNNCTG	1 cut(s)	52
CfoI	GCGC	1 cut(s)	177
Cfr13I	GGNCC	5 cut(s)	283, 368, 380, 421, 422
CseI	GACGC	1 cut(s)	374
Csp6I	GTAC	2 cut(s)	193, 333
CviAII	CATG	3 cut(s)	244, 448, 482
CviQI	GTAC	2 cut(s)	193, 333
DdeI	CTNAG	2 cut(s)	45, 53
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
DraIII	CACNNNGTG	1 cut(s)	295
EaeI	YGGCCR	1 cut(s)	299
EagI	CGGCCG	1 cut(s)	299
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
EclXI	CGGCCG	1 cut(s)	299
Eco24I	GRGCYC	1 cut(s)	425
Eco52I	CGGCCG	1 cut(s)	299
EcoT22I	ATGCAT	1 cut(s)	483
EcoT38I	GRGCYC	1 cut(s)	425
FaeI	CATG	3 cut(s)	247, 451, 485
FaiI	YATR	5 cut(s)	245, 419, 434, 449, 483
FalI	AAGNNNNNCTT	2 cut(s)	143, 175
FaqI	GGGAC	1 cut(s)	352
FatI	CATG	3 cut(s)	243, 447, 481
FauI	CCCGC	1 cut(s)	59
Fnu4HI	GCNGC	3 cut(s)	112, 299, 383
FokI	GGATG	2 cut(s)	151, 361
FriOI	GRGCYC	1 cut(s)	425
Fsp4HI	GCNGC	3 cut(s)	112, 299, 383
FspBI	CTAG	1 cut(s)	389
GlaI	GCGC	1 cut(s)	176
GluI	GCNGC	3 cut(s)	112, 299, 383
HaeIII	GGCC	6 cut(s)	111, 284, 301, 370, 382, 423
HapII	CCGG	1 cut(s)	302
HgaI	GACGC	1 cut(s)	374
HhaI	GCGC	1 cut(s)	177
Hin1II	CATG	3 cut(s)	247, 451, 485
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HinfI	GANTC	1 cut(s)	70
HpaII	CCGG	1 cut(s)	302
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	2 cut(s)	34, 48
Hpy188III	TCNNGA	2 cut(s)	125, 389
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	3 cut(s)	101, 244, 299
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4V	TGCA	2 cut(s)	142, 481
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 172, 281, 391
HpyF3I	CTNAG	2 cut(s)	45, 53
Hsp92II	CATG	3 cut(s)	247, 451, 485
HspAI	GCGC	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	78
LmnI	GCTCC	1 cut(s)	356
LweI	GCATC	1 cut(s)	129
MaeI	CTAG	1 cut(s)	389
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	1 cut(s)	80
MbiI	CCGCTC	1 cut(s)	136
MboI	GATC	1 cut(s)	78
MboII	GAAGA	3 cut(s)	247, 268, 452
MhlI	GDGCHC	1 cut(s)	425
MluCI	AATT	2 cut(s)	179, 487
MmeI	TCCRAC	2 cut(s)	57, 334
MnlI	CCTC	3 cut(s)	220, 240, 252
Mph1103I	ATGCAT	1 cut(s)	483
MseI	TTAA	1 cut(s)	467
MspI	CCGG	1 cut(s)	302
Mva1269I	GAATGC	1 cut(s)	483
MvnI	CGCG	2 cut(s)	197, 385
MwoI	GCNNNNNNNGC	4 cut(s)	25, 172, 281, 391
NdeII	GATC	1 cut(s)	78
NlaIII	CATG	3 cut(s)	247, 451, 485
NlaIV	GGNNCC	2 cut(s)	263, 423
NmuCI	GTSAC	1 cut(s)	122
NsiI	ATGCAT	1 cut(s)	483
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PctI	GAATGC	1 cut(s)	483
PfeI	GAWTC	1 cut(s)	70
Pfl23II	CGTACG	1 cut(s)	192
PflMI	CCANNNNNTGG	1 cut(s)	271
PkrI	GCNGC	3 cut(s)	113, 300, 384
PspLI	CGTACG	1 cut(s)	192
PspN4I	GGNNCC	2 cut(s)	263, 423
PspOMI	GGGCCC	1 cut(s)	421
PspPI	GGNCC	5 cut(s)	283, 368, 380, 421, 422
PstNI	CAGNNNCTG	1 cut(s)	52
RsaI	GTAC	2 cut(s)	194, 334
RsaNI	GTAC	2 cut(s)	193, 333
SaqAI	TTAA	1 cut(s)	467
SatI	GCNGC	3 cut(s)	112, 299, 383
Sau3AI	GATC	1 cut(s)	78
Sau96I	GGNCC	5 cut(s)	283, 368, 380, 421, 422
SduI	GDGCHC	1 cut(s)	425
SetI	ASST	7 cut(s)	21, 224, 231, 323, 334, 364, 396
SfaNI	GCATC	1 cut(s)	129
SfcI	CTRYAG	1 cut(s)	217
Sse9I	AATT	2 cut(s)	179, 487
SsiI	CCGC	5 cut(s)	66, 112, 136, 298, 383
SspMI	CTAG	1 cut(s)	389
TaaI	ACNGT	1 cut(s)	122
TaqI	TCGA	1 cut(s)	225
TasI	AATT	2 cut(s)	179, 487
TauI	GCSGC	3 cut(s)	114, 301, 385
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	467
Tru9I	TTAA	1 cut(s)	467
TseFI	GTSAC	1 cut(s)	122
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	2 cut(s)	120, 449
TspGWI	ACGGA	1 cut(s)	71
Van91I	CCANNNNNTGG	1 cut(s)	271
XapI	RAATTY	1 cut(s)	179
XbaI	TCTAGA	1 cut(s)	388
XspI	CTAG	1 cut(s)	389
Zsp2I	ATGCAT	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.