Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004483.1

Orthogroup ID

OG0020631

Physical Location & Seq

Genomic Coordinates Reverse (-)

10089 .. 10562

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004483.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ctgttcttctctctcctcgtcttcctcgctcgtgctgaagtggacggcgggaatccattgatccgtcaagtcgtggacggtgacaatgaaggccaccaccacagtcacgacggcgagcggatgcacagagccaagcaccacttctcgctgttgaagcgcaaattctgcaagtcatacgcgagcgatgaggagcaagactacaggttcgaggtgttgaagaacaacatgaggaaggcgaagaggcaccagcgattggctcaaacggcccaacatggcgtgcggccggacgggaagcaacacaggtctgggaaaggtaccgggagtgattggatggttggagcgggttttgggcctttgtttgggccgcgtctagagctgaccattgatttcggcttggatatgggcccaactattatgaaagaagaacacatgaaaagttttcggtttttgagcgaaagaatgcatgagaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0070011 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04142 ko04210 map04142 map04210

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

157

Amino Acids

18.1

Weight (kDa)

9.33

Isoelectric Point (pI)

27.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020631)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000009085
rosa_multiflora	Rmu_sc0004191.1_g000053 Rmu_sc0004483.1_g000003
rosa_samantha	Rh1CG191400 Rh4DG005500 Rh7BG356900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	314
AccB1I	GGYRCC	2 cut(s)	243, 314
AccB7I	CCANNNNNTGG	1 cut(s)	253
AccBSI	CCGCTC	2 cut(s)	118, 341
AccII	CGCG	2 cut(s)	179, 367
AciI	CCGC	5 cut(s)	48, 118, 280, 341, 365
AclWI	GGATC	1 cut(s)	55
AcoI	YGGCCR	1 cut(s)	281
AcsI	RAATTY	1 cut(s)	161
AcuI	CTGAAG	1 cut(s)	57
AfaI	GTAC	1 cut(s)	316
AfiI	CCNNNNNNNGG	2 cut(s)	253, 359
AgsI	TTSAA	2 cut(s)	154, 217
AjuI	GAANNNNNNNTTGG	2 cut(s)	125, 157
AluBI	AGCT	1 cut(s)	376
AluI	AGCT	1 cut(s)	376
AlwI	GGATC	1 cut(s)	55
AoxI	GGCC	6 cut(s)	91, 264, 281, 350, 362, 403
ApaI	GGGCCC	1 cut(s)	407
ApoI	RAATTY	1 cut(s)	161
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
Asp718I	GGTACC	1 cut(s)	314
AspLEI	GCGC	1 cut(s)	159
AspS9I	GGNCC	5 cut(s)	265, 350, 362, 403, 404
AsuC2I	CCSGG	1 cut(s)	319
AsuHPI	GGTGA	1 cut(s)	92
BaeGI	GKGCMC	1 cut(s)	407
BanI	GGYRCC	2 cut(s)	243, 314
BanII	GRGCYC	1 cut(s)	407
BauI	CACGAG	1 cut(s)	30
BbsI	GAAGAC	1 cut(s)	13
BccI	CCATC	1 cut(s)	325
BceAI	ACGGC	3 cut(s)	61, 127, 279
BcnI	CCSGG	1 cut(s)	319
BfaI	CTAG	1 cut(s)	371
BfmI	CTRYAG	1 cut(s)	199
BisI	GCNGC	2 cut(s)	281, 365
BlsI	GCNGC	2 cut(s)	282, 366
Bme1390I	CCNGG	1 cut(s)	319
BmgT120I	GGNCC	5 cut(s)	265, 350, 362, 403, 404
BmiI	GGNNCC	3 cut(s)	245, 316, 405
BmrFI	CCNGG	1 cut(s)	319
BmsI	GCATC	1 cut(s)	111
BpiI	GAAGAC	1 cut(s)	13
BpuMI	CCSGG	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 359
BseGI	GGATG	2 cut(s)	126, 336
BseLI	CCNNNNNNNGG	2 cut(s)	253, 359
BseRI	GAGGAG	2 cut(s)	5, 203
BseSI	GKGCMC	1 cut(s)	407
BseX3I	CGGCCG	1 cut(s)	281
Bsh1236I	CGCG	2 cut(s)	179, 367
Bsh1285I	CGRYCG	1 cut(s)	284
BshFI	GGCC	6 cut(s)	93, 266, 283, 352, 364, 405
BshNI	GGYRCC	2 cut(s)	243, 314
BsiEI	CGRYCG	1 cut(s)	284
BsiSI	CCGG	2 cut(s)	284, 318
BslI	CCNNNNNNNGG	2 cut(s)	253, 359
BsmI	GAATGC	1 cut(s)	465
BsnI	GGCC	6 cut(s)	93, 266, 283, 352, 364, 405
Bsp120I	GGGCCC	1 cut(s)	403
Bsp1286I	GDGCHC	1 cut(s)	407
Bsp143I	GATC	1 cut(s)	60
BspACI	CCGC	5 cut(s)	48, 118, 280, 341, 365
BspANI	GGCC	6 cut(s)	93, 266, 283, 352, 364, 405
BspFNI	CGCG	2 cut(s)	179, 367
BspLI	GGNNCC	3 cut(s)	245, 316, 405
BspPI	GGATC	1 cut(s)	55
BspT107I	GGYRCC	2 cut(s)	243, 314
BsrBI	CCGCTC	2 cut(s)	118, 341
BssMI	GATC	1 cut(s)	60
BssSI	CACGAG	1 cut(s)	30
Bst2BI	CACGAG	1 cut(s)	30
Bst4CI	ACNGT	2 cut(s)	80, 104
Bst6I	CTCTTC	1 cut(s)	233
BstAPI	GCANNNNNTGC	1 cut(s)	165
BstC8I	GCNNGC	3 cut(s)	116, 181, 278
BstF5I	GGATG	2 cut(s)	126, 336
BstFNI	CGCG	2 cut(s)	179, 367
BstHHI	GCGC	1 cut(s)	159
BstKTI	GATC	1 cut(s)	63
BstMBI	GATC	1 cut(s)	60
BstMCI	CGRYCG	1 cut(s)	284
BstMWI	GCNNNNNNNGC	4 cut(s)	154, 165, 263, 373
BstSCI	CCNGG	1 cut(s)	317
BstSFI	CTRYAG	1 cut(s)	199
BstSLI	GKGCMC	1 cut(s)	407
BstUI	CGCG	2 cut(s)	179, 367
BstV2I	GAAGAC	1 cut(s)	13
BstZI	CGGCCG	1 cut(s)	281
BsuRI	GGCC	6 cut(s)	93, 266, 283, 352, 364, 405
BtgZI	GCGATG	1 cut(s)	198
BtsCI	GGATG	2 cut(s)	126, 336
Cac8I	GCNNGC	3 cut(s)	116, 181, 278
CfoI	GCGC	1 cut(s)	159
Cfr13I	GGNCC	5 cut(s)	265, 350, 362, 403, 404
CseI	GACGC	1 cut(s)	356
Csp6I	GTAC	1 cut(s)	315
CviAII	CATG	4 cut(s)	226, 272, 430, 464
CviQI	GTAC	1 cut(s)	315
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
EaeI	YGGCCR	1 cut(s)	281
EagI	CGGCCG	1 cut(s)	281
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
EclXI	CGGCCG	1 cut(s)	281
Eco24I	GRGCYC	1 cut(s)	407
Eco52I	CGGCCG	1 cut(s)	281
Eco57I	CTGAAG	1 cut(s)	57
EcoT22I	ATGCAT	1 cut(s)	465
EcoT38I	GRGCYC	1 cut(s)	407
FaeI	CATG	4 cut(s)	229, 275, 433, 467
FaiI	YATR	7 cut(s)	175, 227, 273, 401, 416, 431, 465
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FatI	CATG	4 cut(s)	225, 271, 429, 463
FauI	CCCGC	2 cut(s)	41, 334
Fnu4HI	GCNGC	2 cut(s)	281, 365
FokI	GGATG	2 cut(s)	133, 343
FriOI	GRGCYC	1 cut(s)	407
Fsp4HI	GCNGC	2 cut(s)	281, 365
FspBI	CTAG	1 cut(s)	371
GlaI	GCGC	1 cut(s)	158
GluI	GCNGC	2 cut(s)	281, 365
HaeIII	GGCC	6 cut(s)	93, 266, 283, 352, 364, 405
HapII	CCGG	2 cut(s)	284, 318
HgaI	GACGC	1 cut(s)	356
HhaI	GCGC	1 cut(s)	159
Hin1II	CATG	4 cut(s)	229, 275, 433, 467
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HinfI	GANTC	1 cut(s)	52
HpaII	CCGG	2 cut(s)	284, 318
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	2 cut(s)	43, 76
Hpy188III	TCNNGA	2 cut(s)	107, 371
Hpy8I	GTNNAC	2 cut(s)	43, 76
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	2 cut(s)	83, 226
HpyCH4III	ACNGT	2 cut(s)	80, 104
HpyCH4V	TGCA	3 cut(s)	124, 168, 463
HpyF10VI	GCNNNNNNNGC	4 cut(s)	154, 165, 263, 373
Hsp92II	CATG	4 cut(s)	229, 275, 433, 467
HspAI	GCGC	1 cut(s)	157
KpnI	GGTACC	1 cut(s)	318
Kzo9I	GATC	1 cut(s)	60
LmnI	GCTCC	2 cut(s)	190, 338
LpnPI	CCDG	6 cut(s)	187, 260, 286, 291, 297, 331
LweI	GCATC	1 cut(s)	111
MaeI	CTAG	1 cut(s)	371
MaeIII	GTNAC	2 cut(s)	80, 104
MalI	GATC	1 cut(s)	62
MbiI	CCGCTC	2 cut(s)	118, 341
MboI	GATC	1 cut(s)	60
MboII	GAAGA	4 cut(s)	13, 229, 250, 434
MhlI	GDGCHC	1 cut(s)	407
MluCI	AATT	2 cut(s)	161, 469
MmeI	TCCRAC	1 cut(s)	316
MnlI	CCTC	6 cut(s)	26, 35, 181, 202, 222, 234
Mph1103I	ATGCAT	1 cut(s)	465
MspI	CCGG	2 cut(s)	284, 318
MspR9I	CCNGG	1 cut(s)	319
Mva1269I	GAATGC	1 cut(s)	465
MvnI	CGCG	2 cut(s)	179, 367
MwoI	GCNNNNNNNGC	4 cut(s)	154, 165, 263, 373
NciI	CCSGG	1 cut(s)	319
NdeII	GATC	1 cut(s)	60
NlaIII	CATG	4 cut(s)	229, 275, 433, 467
NlaIV	GGNNCC	3 cut(s)	245, 316, 405
NmuCI	GTSAC	2 cut(s)	80, 104
NsiI	ATGCAT	1 cut(s)	465
PctI	GAATGC	1 cut(s)	465
PfeI	GAWTC	1 cut(s)	52
PflMI	CCANNNNNTGG	1 cut(s)	253
PkrI	GCNGC	2 cut(s)	282, 366
PspN4I	GGNNCC	3 cut(s)	245, 316, 405
PspOMI	GGGCCC	1 cut(s)	403
PspPI	GGNCC	5 cut(s)	265, 350, 362, 403, 404
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
SatI	GCNGC	2 cut(s)	281, 365
Sau3AI	GATC	1 cut(s)	60
Sau96I	GGNCC	5 cut(s)	265, 350, 362, 403, 404
ScrFI	CCNGG	1 cut(s)	319
SduI	GDGCHC	1 cut(s)	407
SetI	ASST	5 cut(s)	206, 213, 305, 316, 378
SfaNI	GCATC	1 cut(s)	111
SfcI	CTRYAG	1 cut(s)	199
Sse9I	AATT	2 cut(s)	161, 469
SsiI	CCGC	5 cut(s)	48, 118, 280, 341, 365
SspMI	CTAG	1 cut(s)	371
StyD4I	CCNGG	1 cut(s)	317
TaaI	ACNGT	2 cut(s)	80, 104
TaqI	TCGA	1 cut(s)	207
TasI	AATT	2 cut(s)	161, 469
TauI	GCSGC	2 cut(s)	283, 367
TfiI	GAWTC	1 cut(s)	52
TseFI	GTSAC	2 cut(s)	80, 104
Tsp45I	GTSAC	2 cut(s)	80, 104
TspDTI	ATGAA	3 cut(s)	102, 431, 446
TspGWI	ACGGA	1 cut(s)	53
Van91I	CCANNNNNTGG	1 cut(s)	253
XapI	RAATTY	1 cut(s)	161
XbaI	TCTAGA	1 cut(s)	370
XspI	CTAG	1 cut(s)	371
Zsp2I	ATGCAT	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.