Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0020631

Physical Location & Seq

Genomic Coordinates Forward (+)

41571493 .. 41572626

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG191400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCACAGAGCCAAGCACCACTTCTCGCTGTTGAAGCGCAAATTCTGCAAGTCATACGCGAGCGATGAGGAGCAGGACTACAGGTTCGAGGTGTTGAAGAACAACATGAGGAAGGCGAAGAGGCACCAGCGATTGGCTCAAACGGCCCAACACGGCGTGCGGCCGGACGGGAAGCAACACAGGTCTGGGAAAGGTACCGGGAGTGATTGGATGGTTGGAGCGGGTTTTGGGCCTTTGTTTGGGCCGCGTCTAGAGCTGACCATTGATTTCGGCTTGGATATGGGCCCAACTATTATGAAAGAAGAACACATGAGAAGTTTTCGGTTTTTGAGCGAAAGAATGCATGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0070011 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04142 ko04210 map04142 map04210

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

117

Amino Acids

13.69

Weight (kDa)

10.0

Isoelectric Point (pI)

39.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	12 - 50	7.4e-06	Cathepsin propeptide inhibitor domain (I29)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0020631)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000009085
rosa_multiflora	Rmu_sc0004191.1_g000053 Rmu_sc0004483.1_g000003
rosa_samantha	Rh1CG191400 Rh4DG005500 Rh7BG356900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	194
AccB1I	GGYRCC	2 cut(s)	123, 194
AccB7I	CCANNNNNTGG	1 cut(s)	133
AccBSI	CCGCTC	1 cut(s)	221
AccII	CGCG	2 cut(s)	59, 247
AciI	CCGC	3 cut(s)	160, 221, 245
AcoI	YGGCCR	1 cut(s)	161
AcsI	RAATTY	1 cut(s)	41
AdeI	CACNNNGTG	1 cut(s)	157
AfaI	GTAC	1 cut(s)	196
AfiI	CCNNNNNNNGG	2 cut(s)	133, 239
AgsI	TTSAA	2 cut(s)	34, 97
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
AloI	GAACNNNNNNTCC	2 cut(s)	68, 100
AluBI	AGCT	1 cut(s)	256
AluI	AGCT	1 cut(s)	256
AoxI	GGCC	5 cut(s)	144, 161, 230, 242, 283
ApaI	GGGCCC	1 cut(s)	287
ApoI	RAATTY	1 cut(s)	41
ArsI	GACNNNNNNTTYG	2 cut(s)	68, 100
Asp718I	GGTACC	1 cut(s)	194
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	5 cut(s)	145, 230, 242, 283, 284
AsuC2I	CCSGG	1 cut(s)	199
BaeGI	GKGCMC	1 cut(s)	287
BanI	GGYRCC	2 cut(s)	123, 194
BanII	GRGCYC	1 cut(s)	287
BccI	CCATC	1 cut(s)	205
BceAI	ACGGC	2 cut(s)	159, 169
BcnI	CCSGG	1 cut(s)	199
BfaI	CTAG	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	79
BisI	GCNGC	2 cut(s)	161, 245
BlsI	GCNGC	2 cut(s)	162, 246
Bme1390I	CCNGG	1 cut(s)	199
BmgT120I	GGNCC	5 cut(s)	145, 230, 242, 283, 284
BmiI	GGNNCC	3 cut(s)	125, 196, 285
BmrFI	CCNGG	1 cut(s)	199
BpuMI	CCSGG	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 239
BseGI	GGATG	1 cut(s)	216
BseLI	CCNNNNNNNGG	2 cut(s)	133, 239
BseRI	GAGGAG	1 cut(s)	83
BseSI	GKGCMC	1 cut(s)	287
BseX3I	CGGCCG	1 cut(s)	161
Bsh1236I	CGCG	2 cut(s)	59, 247
Bsh1285I	CGRYCG	1 cut(s)	164
BshFI	GGCC	5 cut(s)	146, 163, 232, 244, 285
BshNI	GGYRCC	2 cut(s)	123, 194
BsiEI	CGRYCG	1 cut(s)	164
BsiSI	CCGG	2 cut(s)	164, 198
BslI	CCNNNNNNNGG	2 cut(s)	133, 239
BsmI	GAATGC	1 cut(s)	345
BsnI	GGCC	5 cut(s)	146, 163, 232, 244, 285
Bsp120I	GGGCCC	1 cut(s)	283
Bsp1286I	GDGCHC	1 cut(s)	287
BspACI	CCGC	3 cut(s)	160, 221, 245
BspANI	GGCC	5 cut(s)	146, 163, 232, 244, 285
BspFNI	CGCG	2 cut(s)	59, 247
BspLI	GGNNCC	3 cut(s)	125, 196, 285
BspT107I	GGYRCC	2 cut(s)	123, 194
BsrBI	CCGCTC	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	113
BstAPI	GCANNNNNTGC	1 cut(s)	45
BstC8I	GCNNGC	2 cut(s)	61, 158
BstF5I	GGATG	1 cut(s)	216
BstFNI	CGCG	2 cut(s)	59, 247
BstHHI	GCGC	1 cut(s)	39
BstMCI	CGRYCG	1 cut(s)	164
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 45, 143, 253
BstSCI	CCNGG	1 cut(s)	197
BstSFI	CTRYAG	1 cut(s)	79
BstSLI	GKGCMC	1 cut(s)	287
BstUI	CGCG	2 cut(s)	59, 247
BstZI	CGGCCG	1 cut(s)	161
BsuRI	GGCC	5 cut(s)	146, 163, 232, 244, 285
BtgZI	GCGATG	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	216
Cac8I	GCNNGC	2 cut(s)	61, 158
CfoI	GCGC	1 cut(s)	39
Cfr13I	GGNCC	5 cut(s)	145, 230, 242, 283, 284
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	3 cut(s)	106, 310, 344
CviJI	RGCY	9 cut(s)	11, 137, 146, 163, 232, 244, 256, 273, 285
CviKI_1	RGCY	9 cut(s)	11, 137, 146, 163, 232, 244, 256, 273, 285
CviQI	GTAC	1 cut(s)	195
DraIII	CACNNNGTG	1 cut(s)	157
EaeI	YGGCCR	1 cut(s)	161
EagI	CGGCCG	1 cut(s)	161
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
EclXI	CGGCCG	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	287
Eco52I	CGGCCG	1 cut(s)	161
EcoT22I	ATGCAT	1 cut(s)	345
EcoT38I	GRGCYC	1 cut(s)	287
FaeI	CATG	3 cut(s)	109, 313, 347
FaiI	YATR	6 cut(s)	55, 107, 281, 296, 311, 345
FalI	AAGNNNNNCTT	1 cut(s)	37
FatI	CATG	3 cut(s)	105, 309, 343
FauI	CCCGC	1 cut(s)	214
Fnu4HI	GCNGC	2 cut(s)	161, 245
FokI	GGATG	1 cut(s)	223
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	2 cut(s)	161, 245
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	2 cut(s)	161, 245
HaeIII	GGCC	5 cut(s)	146, 163, 232, 244, 285
HapII	CCGG	2 cut(s)	164, 198
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	3 cut(s)	109, 313, 347
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HpaII	CCGG	2 cut(s)	164, 198
Hpy188III	TCNNGA	1 cut(s)	251
HpyAV	CCTTC	1 cut(s)	106
HpyCH4V	TGCA	3 cut(s)	4, 48, 343
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 45, 143, 253
Hsp92II	CATG	3 cut(s)	109, 313, 347
HspAI	GCGC	1 cut(s)	37
KpnI	GGTACC	1 cut(s)	198
LmnI	GCTCC	2 cut(s)	70, 218
LpnPI	CCDG	7 cut(s)	59, 67, 140, 166, 171, 177, 211
MaeI	CTAG	1 cut(s)	251
MbiI	CCGCTC	1 cut(s)	221
MboII	GAAGA	3 cut(s)	109, 130, 314
MhlI	GDGCHC	1 cut(s)	287
MluCI	AATT	2 cut(s)	41, 349
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	4 cut(s)	61, 82, 102, 114
Mph1103I	ATGCAT	1 cut(s)	345
MspI	CCGG	2 cut(s)	164, 198
MspR9I	CCNGG	1 cut(s)	199
Mva1269I	GAATGC	1 cut(s)	345
MvnI	CGCG	2 cut(s)	59, 247
MwoI	GCNNNNNNNGC	4 cut(s)	34, 45, 143, 253
NciI	CCSGG	1 cut(s)	199
NlaIII	CATG	3 cut(s)	109, 313, 347
NlaIV	GGNNCC	3 cut(s)	125, 196, 285
NsiI	ATGCAT	1 cut(s)	345
PctI	GAATGC	1 cut(s)	345
PflMI	CCANNNNNTGG	1 cut(s)	133
PkrI	GCNGC	2 cut(s)	162, 246
PspN4I	GGNNCC	3 cut(s)	125, 196, 285
PspOMI	GGGCCC	1 cut(s)	283
PspPI	GGNCC	5 cut(s)	145, 230, 242, 283, 284
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
SatI	GCNGC	2 cut(s)	161, 245
Sau96I	GGNCC	5 cut(s)	145, 230, 242, 283, 284
ScrFI	CCNGG	1 cut(s)	199
SduI	GDGCHC	1 cut(s)	287
SetI	ASST	5 cut(s)	86, 93, 185, 196, 258
SfcI	CTRYAG	1 cut(s)	79
Sse9I	AATT	2 cut(s)	41, 349
SsiI	CCGC	3 cut(s)	160, 221, 245
SspMI	CTAG	1 cut(s)	251
StyD4I	CCNGG	1 cut(s)	197
TaqI	TCGA	1 cut(s)	87
TasI	AATT	2 cut(s)	41, 349
TauI	GCSGC	2 cut(s)	163, 247
TspDTI	ATGAA	1 cut(s)	311
Van91I	CCANNNNNTGG	1 cut(s)	133
XapI	RAATTY	1 cut(s)	41
XbaI	TCTAGA	1 cut(s)	250
XspI	CTAG	1 cut(s)	251
Zsp2I	ATGCAT	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.