Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0022910

Physical Location & Seq

Genomic Coordinates Forward (+)

278230 .. 278828

Gene Structure 599 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010290

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGCCCTAGCCTCCATGGGGAACAAAGCCTCCAAGAATTCCGACAAGATCGGAGATTTGGAGGTGTCTCCAATGGATGCAGCGGCTTTGTCTTCGGAAGGGGGTTTCGATAAATTTAGTGTTGACAATGAGAAAGAATTGGTTTGGGGGAAAAGGATTAAGGGAAGTTCAGGGAGGGATTGGTGTGGAAGCAGGACAATGGTGGAGGAGGAGGGTCTGAGTTTGGGAGGGAGGAGAAGTTCTGTGAAGAGCTTAGTAAGAAAAAGAAGAAGAAGAAGAAGCAGAAGAGGGGTTTCGATTCGGGTTGTGGTGGCAGAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

108

Amino Acids

11.67

Weight (kDa)

10.45

Isoelectric Point (pI)

74.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022910)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000010290
rosa_rugosa	Rorug06G0400200
rosa_samantha	Rh6BG529200 Rh6DG520300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	83
AcsI	RAATTY	2 cut(s)	37, 113
AfiI	CCNNNNNNNGG	1 cut(s)	18
AloI	GAACNNNNNNTCC	4 cut(s)	14, 46, 223, 255
AluBI	AGCT	1 cut(s)	252
AluI	AGCT	1 cut(s)	252
Alw26I	GTCTC	1 cut(s)	72
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	80
ApoI	RAATTY	2 cut(s)	37, 113
AspS9I	GGNCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	92
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	1 cut(s)	8
BisI	GCNGC	2 cut(s)	81, 84
BlsI	GCNGC	2 cut(s)	82, 85
BmgT120I	GGNCC	1 cut(s)	4
BmsI	GCATC	1 cut(s)	67
BpiI	GAAGAC	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	15
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 44, 223, 253
Bsc4I	CCNNNNNNNGG	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	209
BseRI	GAGGAG	3 cut(s)	221, 224, 247
BseXI	GCAGC	1 cut(s)	92
BshFI	GGCC	1 cut(s)	5
BslI	CCNNNNNNNGG	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	72
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	48
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	210
BspQI	GCTCTTC	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	15
Bst6I	CTCTTC	2 cut(s)	242, 280
BstDEI	CTNAG	2 cut(s)	218, 253
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	1 cut(s)	82
BstKTI	GATC	1 cut(s)	51
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	92
BstV2I	GAAGAC	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	15
BtsCI	GGATG	1 cut(s)	82
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	1 cut(s)	16
CviJI	RGCY	5 cut(s)	5, 11, 29, 86, 252
CviKI_1	RGCY	5 cut(s)	5, 11, 29, 86, 252
DdeI	CTNAG	2 cut(s)	218, 253
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
Eam1104I	CTCTTC	2 cut(s)	242, 280
EarI	CTCTTC	2 cut(s)	242, 280
Eco130I	CCWWGG	1 cut(s)	15
EcoRI	GAATTC	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	1 cut(s)	19
FaiI	YATR	1 cut(s)	17
FatI	CATG	1 cut(s)	15
Fnu4HI	GCNGC	2 cut(s)	81, 84
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	2 cut(s)	81, 84
FspBI	CTAG	1 cut(s)	8
GluI	GCNGC	2 cut(s)	81, 84
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	19
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	1 cut(s)	298
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	4 cut(s)	43, 53, 97, 219
Hpy8I	GTNNAC	1 cut(s)	124
HpyAV	CCTTC	2 cut(s)	92, 311
HpyCH4V	TGCA	1 cut(s)	80
HpyF3I	CTNAG	2 cut(s)	218, 253
Hsp92II	CATG	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	48
LguI	GCTCTTC	1 cut(s)	242
LpnPI	CCDG	2 cut(s)	156, 178
Lsp1109I	GCAGC	1 cut(s)	92
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	1 cut(s)	8
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	7 cut(s)	84, 259, 279, 282, 285, 288, 297
MluCI	AATT	3 cut(s)	37, 113, 137
MmeI	TCCRAC	1 cut(s)	66
MseI	TTAA	1 cut(s)	159
MspA1I	CMGCKG	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	15
NdeII	GATC	1 cut(s)	48
NlaIII	CATG	1 cut(s)	19
PciSI	GCTCTTC	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	298
PkrI	GCNGC	2 cut(s)	82, 85
PspPI	GGNCC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	2 cut(s)	81, 84
Sau3AI	GATC	1 cut(s)	48
Sau96I	GGNCC	1 cut(s)	4
SetI	ASST	2 cut(s)	66, 254
SfaNI	GCATC	1 cut(s)	67
SgeI	CNNG	7 cut(s)	20, 28, 46, 58, 183, 205, 314
Sse9I	AATT	3 cut(s)	37, 113, 137
SsiI	CCGC	1 cut(s)	83
SspMI	CTAG	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	15
TaqI	TCGA	2 cut(s)	108, 296
TasI	AATT	3 cut(s)	37, 113, 137
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	1 cut(s)	298
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TseI	GCWGC	1 cut(s)	80
XapI	RAATTY	2 cut(s)	37, 113
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.