Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0022910

Physical Location & Seq

Genomic Coordinates Reverse (-)

67097259 .. 67097853

Gene Structure 595 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG520300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCCCTAGCCTCCATGGGGAACAAAGCCTCCAAGAATTCCGACAAGATCGGAGTTGGGGAGGAAGAAGATGAGGTAGAGACTGAGAAAAAAGAGATTCTTGAAGTGGTTGTGGCCATTGGGGATGATAATGGTTCGATCTTGGAAAAGGAGAGCATGAGTTTTGAGTTGGTGACTGGTGGATTGGAAGATGGCTGGTCGCCGGATTGCTATGTGGTTCGGATTTCGGATTTGGAGGCGTCTCCAGTGGATGCAGCGGCTTTGTCGCCGGAGGGGGGTTTCGATAAGTTCAGTATTGACAGTGAGAAAGAATTGGTTAGGGGGAAGAGGATTAAGGGAAGTTCAGGGAGGGATTGTTGGTGGAAGCAGGACAATGGTGGAGGAGGAGGGTCTGAGTTTGGGAGGAAGGAGGAGTTCTGTGAAGAGCTTAGTAAGAAAAGGAAGAAGAAGAAGAAGAAGAGGGGTTTCGATTCGGTTGTGGTGGCAGAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

164

Amino Acids

17.81

Weight (kDa)

4.86

Isoelectric Point (pI)

54.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022910)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000010290
rosa_rugosa	Rorug06G0400200
rosa_samantha	Rh6BG529200 Rh6DG520300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	257
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	1 cut(s)	37
AcyI	GRCGYC	1 cut(s)	239
AfiI	CCNNNNNNNGG	2 cut(s)	18, 275
AgsI	TTSAA	1 cut(s)	104
AloI	GAACNNNNNNTCC	2 cut(s)	14, 46
AluBI	AGCT	1 cut(s)	427
AluI	AGCT	1 cut(s)	427
Alw26I	GTCTC	2 cut(s)	74, 246
AoxI	GGCC	2 cut(s)	3, 114
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	1 cut(s)	37
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	184
BalI	TGGCCA	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	266
BccI	CCATC	1 cut(s)	185
BcoDI	GTCTC	2 cut(s)	74, 246
BfaI	CTAG	1 cut(s)	8
BisI	GCNGC	2 cut(s)	255, 258
BlsI	GCNGC	2 cut(s)	256, 259
BmgT120I	GGNCC	1 cut(s)	4
BmsI	GCATC	1 cut(s)	241
BpmI	CTGGAG	1 cut(s)	228
BsaHI	GRCGYC	1 cut(s)	239
BsaJI	CCNNGG	1 cut(s)	15
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 44, 340, 370
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 275
Bse1I	ACTGG	2 cut(s)	181, 245
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	2 cut(s)	130, 256
BseLI	CCNNNNNNNGG	2 cut(s)	18, 275
BseMII	CTCAG	2 cut(s)	75, 384
BseNI	ACTGG	2 cut(s)	181, 245
BseRI	GAGGAG	3 cut(s)	396, 399, 425
BseXI	GCAGC	1 cut(s)	266
BshFI	GGCC	2 cut(s)	5, 116
BsiSI	CCGG	2 cut(s)	203, 269
BslI	CCNNNNNNNGG	2 cut(s)	18, 275
BsmAI	GTCTC	2 cut(s)	74, 246
BsmBI	CGTCTC	1 cut(s)	246
BsnI	GGCC	2 cut(s)	5, 116
Bsp143I	GATC	2 cut(s)	48, 138
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	2 cut(s)	5, 116
BspCNI	CTCAG	2 cut(s)	76, 385
BspQI	GCTCTTC	1 cut(s)	417
BsrI	ACTGG	2 cut(s)	181, 245
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	2 cut(s)	48, 138
BssNI	GRCGYC	1 cut(s)	239
BssT1I	CCWWGG	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	302
Bst6I	CTCTTC	3 cut(s)	320, 417, 452
BstACI	GRCGYC	1 cut(s)	239
BstDEI	CTNAG	3 cut(s)	84, 393, 428
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	2 cut(s)	130, 256
BstKTI	GATC	2 cut(s)	51, 141
BstMAI	GTCTC	2 cut(s)	74, 246
BstMBI	GATC	2 cut(s)	48, 138
BstV1I	GCAGC	1 cut(s)	266
BsuRI	GGCC	2 cut(s)	5, 116
BtgI	CCRYGG	1 cut(s)	15
BtsCI	GGATG	2 cut(s)	130, 256
BtsIMutI	CAGTG	2 cut(s)	252, 307
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	228
CviAII	CATG	2 cut(s)	16, 157
CviJI	RGCY	7 cut(s)	5, 11, 29, 116, 195, 260, 427
CviKI_1	RGCY	7 cut(s)	5, 11, 29, 116, 195, 260, 427
DdeI	CTNAG	3 cut(s)	84, 393, 428
DpnI	GATC	2 cut(s)	50, 140
DpnII	GATC	2 cut(s)	48, 138
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	3 cut(s)	320, 417, 452
EarI	CTCTTC	3 cut(s)	320, 417, 452
Eco130I	CCWWGG	1 cut(s)	15
EcoRI	GAATTC	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	15
Esp3I	CGTCTC	1 cut(s)	246
FaeI	CATG	2 cut(s)	19, 160
FaiI	YATR	3 cut(s)	17, 158, 213
FalI	AAGNNNNNCTT	2 cut(s)	84, 116
FatI	CATG	2 cut(s)	15, 156
Fnu4HI	GCNGC	2 cut(s)	255, 258
FokI	GGATG	2 cut(s)	137, 263
Fsp4HI	GCNGC	2 cut(s)	255, 258
FspBI	CTAG	1 cut(s)	8
GluI	GCNGC	2 cut(s)	255, 258
GsuI	CTGGAG	1 cut(s)	228
HaeIII	GGCC	2 cut(s)	5, 116
HapII	CCGG	2 cut(s)	203, 269
HgaI	GACGC	1 cut(s)	228
Hin1I	GRCGYC	1 cut(s)	239
Hin1II	CATG	2 cut(s)	19, 160
HinfI	GANTC	2 cut(s)	97, 470
HpaII	CCGG	2 cut(s)	203, 269
HphI	GGTGA	1 cut(s)	184
Hpy188I	TCNGA	5 cut(s)	43, 53, 222, 229, 394
Hpy188III	TCNNGA	1 cut(s)	101
HpyAV	CCTTC	2 cut(s)	400, 482
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4V	TGCA	1 cut(s)	254
HpyF3I	CTNAG	3 cut(s)	84, 393, 428
Hsp92I	GRCGYC	1 cut(s)	239
Hsp92II	CATG	2 cut(s)	19, 160
Kzo9I	GATC	2 cut(s)	48, 138
LguI	GCTCTTC	1 cut(s)	417
LpnPI	CCDG	7 cut(s)	162, 181, 216, 258, 282, 330, 353
Lsp1109I	GCAGC	1 cut(s)	266
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	1 cut(s)	8
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	2 cut(s)	50, 140
MboI	GATC	2 cut(s)	48, 138
MlsI	TGGCCA	1 cut(s)	116
MluCI	AATT	2 cut(s)	37, 311
MluNI	TGGCCA	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	66
Mox20I	TGGCCA	1 cut(s)	116
MscI	TGGCCA	1 cut(s)	116
MseI	TTAA	1 cut(s)	333
Msp20I	TGGCCA	1 cut(s)	116
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	2 cut(s)	203, 269
NcoI	CCATGG	1 cut(s)	15
NdeII	GATC	2 cut(s)	48, 138
NlaIII	CATG	2 cut(s)	19, 160
NmuCI	GTSAC	1 cut(s)	172
PciSI	GCTCTTC	1 cut(s)	417
PfeI	GAWTC	2 cut(s)	97, 470
PkrI	GCNGC	2 cut(s)	256, 259
PspPI	GGNCC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	417
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	2 cut(s)	255, 258
Sau3AI	GATC	2 cut(s)	48, 138
Sau96I	GGNCC	1 cut(s)	4
SetI	ASST	2 cut(s)	78, 429
SfaNI	GCATC	1 cut(s)	241
Sse9I	AATT	2 cut(s)	37, 311
SsiI	CCGC	1 cut(s)	257
SspMI	CTAG	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	1 cut(s)	302
TaqI	TCGA	3 cut(s)	137, 282, 468
TasI	AATT	2 cut(s)	37, 311
TauI	GCSGC	1 cut(s)	260
TfiI	GAWTC	2 cut(s)	97, 470
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TscAI	CASTG	2 cut(s)	252, 307
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	172
TspRI	CASTG	2 cut(s)	252, 307
XapI	RAATTY	1 cut(s)	37
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.