Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0022910

Physical Location & Seq

Genomic Coordinates Reverse (-)

71989336 .. 71990446

Gene Structure 1111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG529200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCCCTAGCCTCCATGGGGAACAAAGCCTCCAAGAATTCCGACAAGATCGGAGGTTTCATGCCATCATCGAAGCCCCTATACAACGCAAAAAATAGTAAAAGATTCAAGAAAAGTAGAAAAGAGTTGAAATTGAATAAAAAAAATGTCACAGTTGGGGAGGAAGAAGATGAGGTAGAGACTGAGAAAAAAGAGATTCTTGAAGTGGTTGTGGCCATTGGGGATGATAATGGTTCGATCTTGGAAAAGGAGAGCATGAGTTTTGAGTTGGTGACTGGTGGATTGGAAGATGGCTGGTCGCCGGATTGCTATGTGGTTCGGATTTCGGATTTGGAGGCGTCTCCAGTGGATGCAGCGGCTTTGTCGCTGGAGGGGGGTTTCGATAAGTTTAGTATTGACAGTGAGAAAGAATTGGTTAGGGGGAAGAGGATTAAGGGAAGTTCAGGGAGGGATTGTTGGTGGAAGCAGGACAATGGTGGAGGAGGAGGGTCTGAGTTTGGGAGGAAGGAGGAGTTCTGTGAAGAGCTTAGTAAGAAAAGGAAGAAGAAGAAGAAGAAGAGAGGTTTCGATTCGGGTTGTGATGGCAGAAGGATGAGGAGGATTTGGGGTCGGAAAGGAAGAAGAGGAAGAACACAAAGAAGCAAAGTCAGATGGAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

220

Amino Acids

24.79

Weight (kDa)

9.73

Isoelectric Point (pI)

59.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022910)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000010290
rosa_rugosa	Rorug06G0400200
rosa_samantha	Rh6BG529200 Rh6DG520300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	356
AcoI	YGGCCR	1 cut(s)	213
AcsI	RAATTY	1 cut(s)	37
AcyI	GRCGYC	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	18
AgsI	TTSAA	4 cut(s)	109, 130, 136, 203
AloI	GAACNNNNNNTCC	2 cut(s)	14, 46
AluBI	AGCT	1 cut(s)	526
AluI	AGCT	1 cut(s)	526
Alw26I	GTCTC	2 cut(s)	173, 345
AoxI	GGCC	2 cut(s)	3, 213
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	1 cut(s)	37
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	283
BalI	TGGCCA	1 cut(s)	215
BarI	GAAGNNNNNNTAC	2 cut(s)	65, 97
BbvI	GCAGC	1 cut(s)	365
BccI	CCATC	4 cut(s)	73, 284, 575, 645
BcoDI	GTCTC	2 cut(s)	173, 345
BfaI	CTAG	1 cut(s)	8
BisI	GCNGC	2 cut(s)	354, 357
BlsI	GCNGC	2 cut(s)	355, 358
BmgT120I	GGNCC	1 cut(s)	4
BmsI	GCATC	1 cut(s)	340
BpmI	CTGGAG	2 cut(s)	327, 389
BsaHI	GRCGYC	1 cut(s)	338
BsaJI	CCNNGG	1 cut(s)	15
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 44, 439, 469
Bsc4I	CCNNNNNNNGG	1 cut(s)	18
Bse1I	ACTGG	2 cut(s)	280, 344
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	3 cut(s)	229, 355, 597
BseLI	CCNNNNNNNGG	1 cut(s)	18
BseMII	CTCAG	2 cut(s)	174, 483
BseNI	ACTGG	2 cut(s)	280, 344
BseRI	GAGGAG	4 cut(s)	495, 498, 524, 610
BseXI	GCAGC	1 cut(s)	365
BshFI	GGCC	2 cut(s)	5, 215
BsiSI	CCGG	1 cut(s)	302
BslI	CCNNNNNNNGG	1 cut(s)	18
BsmAI	GTCTC	2 cut(s)	173, 345
BsmBI	CGTCTC	1 cut(s)	345
BsnI	GGCC	2 cut(s)	5, 215
Bsp143I	GATC	2 cut(s)	48, 237
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	1 cut(s)	356
BspANI	GGCC	2 cut(s)	5, 215
BspCNI	CTCAG	2 cut(s)	175, 484
BspQI	GCTCTTC	1 cut(s)	516
BsrI	ACTGG	2 cut(s)	280, 344
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	2 cut(s)	48, 237
BssNI	GRCGYC	1 cut(s)	338
BssT1I	CCWWGG	1 cut(s)	15
Bst4CI	ACNGT	2 cut(s)	154, 401
Bst6I	CTCTTC	4 cut(s)	419, 516, 551, 616
BstACI	GRCGYC	1 cut(s)	338
BstDEI	CTNAG	3 cut(s)	183, 492, 527
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	3 cut(s)	229, 355, 597
BstKTI	GATC	2 cut(s)	51, 240
BstMAI	GTCTC	2 cut(s)	173, 345
BstMBI	GATC	2 cut(s)	48, 237
BstV1I	GCAGC	1 cut(s)	365
BsuRI	GGCC	2 cut(s)	5, 215
BtgI	CCRYGG	1 cut(s)	15
BtsCI	GGATG	3 cut(s)	229, 355, 597
BtsIMutI	CAGTG	2 cut(s)	351, 406
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	327
CviAII	CATG	3 cut(s)	16, 61, 256
CviJI	RGCY	8 cut(s)	5, 11, 29, 76, 215, 294, 359, 526
CviKI_1	RGCY	8 cut(s)	5, 11, 29, 76, 215, 294, 359, 526
DdeI	CTNAG	3 cut(s)	183, 492, 527
DpnI	GATC	2 cut(s)	50, 239
DpnII	GATC	2 cut(s)	48, 237
EaeI	YGGCCR	1 cut(s)	213
Eam1104I	CTCTTC	4 cut(s)	419, 516, 551, 616
EarI	CTCTTC	4 cut(s)	419, 516, 551, 616
Eco130I	CCWWGG	1 cut(s)	15
EcoRI	GAATTC	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	15
Esp3I	CGTCTC	1 cut(s)	345
FaeI	CATG	3 cut(s)	19, 64, 259
FaiI	YATR	5 cut(s)	17, 62, 82, 257, 312
FalI	AAGNNNNNCTT	2 cut(s)	183, 215
FatI	CATG	3 cut(s)	15, 60, 255
Fnu4HI	GCNGC	2 cut(s)	354, 357
FokI	GGATG	3 cut(s)	236, 362, 604
Fsp4HI	GCNGC	2 cut(s)	354, 357
FspBI	CTAG	1 cut(s)	8
GluI	GCNGC	2 cut(s)	354, 357
GsuI	CTGGAG	2 cut(s)	327, 389
HaeIII	GGCC	2 cut(s)	5, 215
HapII	CCGG	1 cut(s)	302
HgaI	GACGC	1 cut(s)	327
Hin1I	GRCGYC	1 cut(s)	338
Hin1II	CATG	3 cut(s)	19, 64, 259
HinfI	GANTC	3 cut(s)	105, 196, 569
HpaII	CCGG	1 cut(s)	302
HphI	GGTGA	1 cut(s)	283
Hpy188I	TCNGA	7 cut(s)	43, 53, 321, 328, 493, 612, 650
Hpy188III	TCNNGA	2 cut(s)	109, 200
HpyAV	CCTTC	2 cut(s)	499, 582
HpyCH4III	ACNGT	2 cut(s)	154, 401
HpyCH4V	TGCA	1 cut(s)	353
HpyF3I	CTNAG	3 cut(s)	183, 492, 527
Hsp92I	GRCGYC	1 cut(s)	338
Hsp92II	CATG	3 cut(s)	19, 64, 259
Kzo9I	GATC	2 cut(s)	48, 237
LguI	GCTCTTC	1 cut(s)	516
LpnPI	CCDG	7 cut(s)	261, 280, 315, 353, 357, 429, 452
Lsp1109I	GCAGC	1 cut(s)	365
LweI	GCATC	1 cut(s)	340
MaeI	CTAG	1 cut(s)	8
MaeIII	GTNAC	2 cut(s)	148, 271
MalI	GATC	2 cut(s)	50, 239
MboI	GATC	2 cut(s)	48, 237
MlsI	TGGCCA	1 cut(s)	215
MluCI	AATT	3 cut(s)	37, 131, 410
MluNI	TGGCCA	1 cut(s)	215
MmeI	TCCRAC	2 cut(s)	66, 590
Mox20I	TGGCCA	1 cut(s)	215
MscI	TGGCCA	1 cut(s)	215
MseI	TTAA	1 cut(s)	432
Msp20I	TGGCCA	1 cut(s)	215
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	1 cut(s)	302
NcoI	CCATGG	1 cut(s)	15
NdeII	GATC	2 cut(s)	48, 237
NlaIII	CATG	3 cut(s)	19, 64, 259
NmuCI	GTSAC	2 cut(s)	148, 271
PciSI	GCTCTTC	1 cut(s)	516
PfeI	GAWTC	3 cut(s)	105, 196, 569
PkrI	GCNGC	2 cut(s)	355, 358
PspPI	GGNCC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	516
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	2 cut(s)	354, 357
Sau3AI	GATC	2 cut(s)	48, 237
Sau96I	GGNCC	1 cut(s)	4
SetI	ASST	4 cut(s)	58, 177, 528, 565
SfaNI	GCATC	1 cut(s)	340
Sse9I	AATT	3 cut(s)	37, 131, 410
SsiI	CCGC	1 cut(s)	356
SspMI	CTAG	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	2 cut(s)	154, 401
TaqI	TCGA	4 cut(s)	71, 236, 381, 567
TasI	AATT	3 cut(s)	37, 131, 410
TauI	GCSGC	1 cut(s)	359
TfiI	GAWTC	3 cut(s)	105, 196, 569
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TscAI	CASTG	2 cut(s)	351, 406
TseFI	GTSAC	2 cut(s)	148, 271
TseI	GCWGC	1 cut(s)	353
Tsp45I	GTSAC	2 cut(s)	148, 271
TspDTI	ATGAA	1 cut(s)	49
TspRI	CASTG	2 cut(s)	351, 406
XapI	RAATTY	1 cut(s)	37
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.