RLG00000011019

Lysine histidine transporter-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017612
Physical Location & Seq
Forward (+)
6133228 .. 6135767
2540 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011019

Sequence Viewer

Length: 1665 bp
ATGGCAGAGAGTAACCAAAGAGAGCTGAACATTCATGATGAGTTCATGGAGGAAGATGACATTTCTGCAATCCCTGTGAGCACTACATCACCCCCAGAAATAGATTCTGCGTCGCAGGATCATGTAGATGATGTTCATAATAATCATGTCGCAACAGCGCCTCCGGTGCAAACAGATCAATCCAATCCTAGCGGAATGAGTTCACCGTCTTTGTCGGAGAAGCCACTTCTGAATCTCTCCATAGTACCCGTTAATGTACGTAGAGTAACCCCGAGGTCTCACACTCCCAATTTCTTCACGCCATTGGGTAGCCCTATTAGAAGGGCTATCCGGCTTACCAAGTTTGACCCTCAGGATGCTTGGCTCCCCATCACAGAGTCAAGAAATGGCAATGCCTATTATGCTGCCTTCCATACCCTTTGCTCCGGTATCGGAATTCCGGCCCTCGTGCTTCCCGTCTCCTTCACCGTTCTCGGATGGACATGGGGGGTCATAAGCTTGACGGTGGCCTTTACATGGCAGCTCTACACTCTCTGGCTTTTAGTCAAGCTTCACGAATCGACGGAAACTGGGATGCGTTACAGTAGATACCTCCAGCTCTTCAGCTCCACTTTCGGAGACAAAATGGGAAAGATCTTCGCCGTTTTCCCCATCTACTACCTCTCAGGCGGCACGTGCGTAGCCCTCATCATAGTTGGTGGTTCCAGCATGAAGCTCTTCTATGAGATGCTGTGCGGCCACGAATGCACTTCCAAGCCGCTCACCTCGGTGGAGTGGTACTTGGCGTTTACGTGTGCCGCGGTGGTTCTGTCTCAGCTGCCCAACTTGAACTCCATCGCTGGAGTCTCGTTGATTGGTGCGATCACCGCTATTGGCTACTGCACCATCATGTGGCTGGTCGCCGTCACAGAGGGCAGGCTTGACGGCGTTTCTTATGATCCTAAAAAGGAAGAATCCAATATCGCTATGATCTTCAGCATTCTCAATGCTCTTGGGATTATTGCTTTTGCTTTTAAGGGTCACAATCTTACCCTAGAAATTCAGGCAACTATGCCTTCAAGTGACAAAAAGCCATCCCATGTGCCAATGTGGAGAGGGGTAAAGTTTGCATATGTAATCATCGCATTGTGCTTATTTCCTCTAGCAATTGGTGGATATTGGGCGTATGGACACAAGATACCACCAAATGGGGGAATGCTGACTGCAATTTATGAGTTCCACGGGCGTGACACTTCGACATTCATTCTTGCACTGACAGCCTTATTCATCATTGTCAATGCTGTAAGCTCATTCCAAATCTTTGGGATGCCCATGTTCGATGATATGGAGTCCAAGTACATCACTCGCTTTAACAAACCGTGCCCGTGGTGGCTCCGATCAATTTCTCGCGCCATGTTTGGATTTGGCTGCTTCTTCATGGCGGTCGCAATCCCCTTCTTGGGTAGCTTTGCTGGTCTCATTGGAGGGATTGCCATACCGATTACCTTTGCCTATCCTTGTTTCTTGTGGTTGAAGATTAAGAAGCCCAAAAGGTACAGCTTCATGTGGTTGCTAAATTGGACACTGGGACTTTCCGGCACCGCTCTCAGTATTATACTCATAGCCGCCGGCATTTATGTTGTCATCGACACCGGAATTCAAGTCAGCTTCTTCAAGCCTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

555

Amino Acids

61.22

Weight (kDa)

7.58

Isoelectric Point (pI)

40.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 129 - 542 6.5e-63 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017612)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g37650
malus_domestica MD08G1004100.v1.1
prunus_persica Prupe.1G356000_v2.0.a1
pyrus_communis pycom08g00300
rosa_chinensis RchiOBHm_Chr6g0304081
rosa_laevigata RLG00000011019
rosa_multiflora Rmu_sc0003805.1_g000010
rosa_roxburghii Rroxscaffold_7G00164110
rosa_rugosa Rorug06G0327400
rosa_samantha Rh6AG441400 Rh6DG440800
rosa_wichuraiana Rw6G038250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1577
AccB7I CCANNNNNTGG 2 cut(s) 891, 1187
AccBSI CCGCTC 2 cut(s) 760, 1583
AccII CGCG 2 cut(s) 800, 1389
AclWI GGATC 2 cut(s) 126, 932
AcoI YGGCCR 1 cut(s) 736
AcsI RAATTY 3 cut(s) 435, 1038, 1635
AcuI CTGAAG 2 cut(s) 586, 958
AcvI CACGTG 1 cut(s) 675
AfaI GTAC 5 cut(s) 246, 258, 779, 1337, 1535
AfiI CCNNNNNNNGG 6 cut(s) 516, 891, 1187, 1190, 1438, 1439
AflIII ACRYGT 1 cut(s) 791
AgsI TTSAA 5 cut(s) 829, 1059, 1513, 1640, 1654
AleI CACNNNNGTG 2 cut(s) 767, 1224
Alw21I GWGCWC 1 cut(s) 83
Alw26I GTCTC 6 cut(s) 282, 463, 612, 816, 850, 1460
AlwI GGATC 2 cut(s) 126, 932
Ama87I CYCGRG 1 cut(s) 271
AoxI GGCC 3 cut(s) 441, 507, 736
ApeKI GCWGC 4 cut(s) 404, 520, 817, 1407
ApoI RAATTY 3 cut(s) 435, 1038, 1635
Asp700I GAANNNNTTC 2 cut(s) 199, 716
AspLEI GCGC 2 cut(s) 160, 1391
AspS9I GGNCC 1 cut(s) 442
AsuHPI GGTGA 5 cut(s) 81, 195, 457, 754, 856
AvaI CYCGRG 1 cut(s) 271
AxyI CCTNAGG 1 cut(s) 351
BaeGI GKGCMC 1 cut(s) 1364
BanI GGYRCC 1 cut(s) 1577
BauI CACGAG 1 cut(s) 446
BbrPI CACGTG 1 cut(s) 675
Bbv12I GWGCWC 1 cut(s) 83
BbvI GCAGC 4 cut(s) 391, 532, 804, 1394
BccI CCATC 6 cut(s) 377, 471, 659, 842, 893, 1081
BceAI ACGGC 3 cut(s) 626, 887, 940
BcoDI GTCTC 6 cut(s) 282, 463, 612, 816, 850, 1460
BfaI CTAG 3 cut(s) 189, 1034, 1142
BfoI RGCGCY 1 cut(s) 161
BglII AGATCT 1 cut(s) 633
BisI GCNGC 9 cut(s) 405, 521, 670, 736, 758, 798, 818, 1408, 1605
BlsI GCNGC 9 cut(s) 406, 522, 671, 737, 759, 799, 819, 1409, 1606
BmeT110I CYCGRG 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 442
BmiI GGNNCC 4 cut(s) 365, 703, 1373, 1579
BmrI ACTGGG 2 cut(s) 579, 1574
BmsI GCATC 4 cut(s) 346, 564, 717, 1296
BmuI ACTGGG 2 cut(s) 579, 1574
BpmI CTGGAG 2 cut(s) 578, 861
BsaAI YACGTR 3 cut(s) 260, 675, 792
BsaI GGTCTC 2 cut(s) 282, 1460
BsaJI CCNNGG 5 cut(s) 272, 765, 798, 1219, 1364
BsaWI WCCGGW 3 cut(s) 163, 425, 1631
BsaXI ACNNNNNCTCC 6 cut(s) 145, 175, 815, 845, 1319, 1349
Bsc4I CCNNNNNNNGG 6 cut(s) 516, 891, 1187, 1190, 1438, 1439
Bse118I RCCGGY 1 cut(s) 1607
Bse1I ACTGG 2 cut(s) 574, 1569
Bse21I CCTNAGG 1 cut(s) 351
Bse3DI GCAATG 1 cut(s) 397
BseDI CCNNGG 5 cut(s) 272, 765, 798, 1219, 1364
BseGI GGATG 5 cut(s) 361, 482, 579, 1073, 1311
BseLI CCNNNNNNNGG 6 cut(s) 516, 891, 1187, 1190, 1438, 1439
BseMI GCAATG 1 cut(s) 397
BseMII CTCAG 4 cut(s) 365, 678, 827, 1600
BseNI ACTGG 2 cut(s) 574, 1569
BseSI GKGCMC 1 cut(s) 1364
BseXI GCAGC 4 cut(s) 391, 532, 804, 1394
BsgI GTGCAG 1 cut(s) 865
Bsh1236I CGCG 2 cut(s) 800, 1389
Bsh1285I CGRYCG 1 cut(s) 1425
BshFI GGCC 3 cut(s) 443, 509, 738
BshNI GGYRCC 1 cut(s) 1577
BsiEI CGRYCG 1 cut(s) 1425
BsiHKAI GWGCWC 1 cut(s) 83
BsiHKCI CYCGRG 1 cut(s) 271
BsiSI CCGG 7 cut(s) 164, 331, 426, 440, 1575, 1608, 1632
BslFI GGGAC 1 cut(s) 1581
BslI CCNNNNNNNGG 6 cut(s) 516, 891, 1187, 1190, 1438, 1439
BsmAI GTCTC 6 cut(s) 282, 463, 612, 816, 850, 1460
BsmBI CGTCTC 1 cut(s) 463
BsmFI GGGAC 1 cut(s) 1581
BsmI GAATGC 3 cut(s) 749, 978, 1200
BsnI GGCC 3 cut(s) 443, 509, 738
Bso31I GGTCTC 2 cut(s) 282, 1460
BsoBI CYCGRG 1 cut(s) 271
Bsp1286I GDGCHC 2 cut(s) 83, 1364
Bsp143I GATC 7 cut(s) 118, 175, 633, 861, 937, 969, 1376
BspANI GGCC 3 cut(s) 443, 509, 738
BspCNI CTCAG 4 cut(s) 364, 677, 826, 1599
BspFNI CGCG 2 cut(s) 800, 1389
BspHI TCATGA 1 cut(s) 34
BspLI GGNNCC 4 cut(s) 365, 703, 1373, 1579
BspPI GGATC 2 cut(s) 126, 932
BspQI GCTCTTC 2 cut(s) 605, 722
BspT107I GGYRCC 1 cut(s) 1577
BspTNI GGTCTC 2 cut(s) 282, 1460
BsrBI CCGCTC 2 cut(s) 760, 1583
BsrDI GCAATG 1 cut(s) 397
BsrFI RCCGGY 1 cut(s) 1607
BsrI ACTGG 2 cut(s) 574, 1569
BssAI RCCGGY 1 cut(s) 1607
BssECI CCNNGG 5 cut(s) 272, 765, 798, 1219, 1364
BssMI GATC 7 cut(s) 118, 175, 633, 861, 937, 969, 1376
BssSI CACGAG 1 cut(s) 446
Bst2BI CACGAG 1 cut(s) 446
Bst4CI ACNGT 5 cut(s) 207, 469, 505, 584, 1359
Bst6I CTCTTC 2 cut(s) 605, 722
BstBAI YACGTR 3 cut(s) 260, 675, 792
BstC8I GCNNGC 2 cut(s) 917, 1609
BstDEI CTNAG 5 cut(s) 351, 664, 813, 1586, 1659
BstDSI CCRYGG 3 cut(s) 798, 1219, 1364
BstF5I GGATG 5 cut(s) 361, 482, 579, 1073, 1311
BstFNI CGCG 2 cut(s) 800, 1389
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 2 cut(s) 160, 1391
BstKTI GATC 7 cut(s) 121, 178, 636, 864, 940, 972, 1379
BstMAI GTCTC 6 cut(s) 282, 463, 612, 816, 850, 1460
BstMBI GATC 7 cut(s) 118, 175, 633, 861, 937, 969, 1376
BstMCI CGRYCG 1 cut(s) 1425
BstMWI GCNNNNNNNGC 6 cut(s) 166, 401, 675, 744, 866, 1256
BstSLI GKGCMC 1 cut(s) 1364
BstSNI TACGTA 1 cut(s) 260
BstUI CGCG 2 cut(s) 800, 1389
BstV1I GCAGC 4 cut(s) 391, 532, 804, 1394
BstX2I RGATCY 1 cut(s) 633
BstXI CCANNNNNNTGG 1 cut(s) 1301
BstYI RGATCY 1 cut(s) 633
Bsu36I CCTNAGG 1 cut(s) 351
BsuRI GGCC 3 cut(s) 443, 509, 738
BtgI CCRYGG 3 cut(s) 798, 1219, 1364
BtgZI GCGATG 2 cut(s) 820, 1105
BtsCI GGATG 5 cut(s) 361, 482, 579, 1073, 1311
BtsIMutI CAGTG 2 cut(s) 1250, 1562
Cac8I GCNNGC 2 cut(s) 917, 1609
CciI TCATGA 1 cut(s) 34
CfoI GCGC 2 cut(s) 160, 1391
Cfr10I RCCGGY 1 cut(s) 1607
Cfr13I GGNCC 1 cut(s) 442
Cfr42I CCGCGG 1 cut(s) 801
CseI GACGC 1 cut(s) 99
Csp6I GTAC 5 cut(s) 245, 257, 778, 1336, 1534
CviQI GTAC 5 cut(s) 245, 257, 778, 1336, 1534
DdeI CTNAG 5 cut(s) 351, 664, 813, 1586, 1659
DpnI GATC 7 cut(s) 120, 177, 635, 863, 939, 971, 1378
DpnII GATC 7 cut(s) 118, 175, 633, 861, 937, 969, 1376
EaeI YGGCCR 1 cut(s) 736
Eam1104I CTCTTC 2 cut(s) 605, 722
EarI CTCTTC 2 cut(s) 605, 722
Eco105I TACGTA 1 cut(s) 260
Eco31I GGTCTC 2 cut(s) 282, 1460
Eco57I CTGAAG 2 cut(s) 586, 958
Eco72I CACGTG 1 cut(s) 675
Eco81I CCTNAGG 1 cut(s) 351
Eco88I CYCGRG 1 cut(s) 271
EcoRI GAATTC 2 cut(s) 435, 1635
Esp3I CGTCTC 1 cut(s) 463
FaqI GGGAC 1 cut(s) 1581
FauNDI CATATG 1 cut(s) 1111
Fnu4HI GCNGC 9 cut(s) 405, 521, 670, 736, 758, 798, 818, 1408, 1605
FokI GGATG 5 cut(s) 368, 489, 586, 1060, 1318
Fsp4HI GCNGC 9 cut(s) 405, 521, 670, 736, 758, 798, 818, 1408, 1605
FspBI CTAG 3 cut(s) 189, 1034, 1142
GlaI GCGC 2 cut(s) 159, 1390
GluI GCNGC 9 cut(s) 405, 521, 670, 736, 758, 798, 818, 1408, 1605
GsuI CTGGAG 2 cut(s) 578, 861
HaeII RGCGCY 1 cut(s) 161
HaeIII GGCC 3 cut(s) 443, 509, 738
HapII CCGG 7 cut(s) 164, 331, 426, 440, 1575, 1608, 1632
HgaI GACGC 1 cut(s) 99
HhaI GCGC 2 cut(s) 160, 1391
Hin6I GCGC 2 cut(s) 158, 1389
HinP1I GCGC 2 cut(s) 158, 1389
HindIII AAGCTT 2 cut(s) 496, 548
HinfI GANTC 7 cut(s) 104, 232, 377, 557, 843, 953, 1328
HpaII CCGG 7 cut(s) 164, 331, 426, 440, 1575, 1608, 1632
HphI GGTGA 5 cut(s) 81, 195, 457, 754, 856
Hpy166II GTNNAC 2 cut(s) 203, 789
Hpy188I TCNGA 6 cut(s) 217, 231, 434, 476, 617, 1376
Hpy188III TCNNGA 4 cut(s) 35, 353, 381, 554
Hpy8I GTNNAC 2 cut(s) 203, 789
Hpy99I CGWCG 2 cut(s) 115, 565
HpyAV CCTTC 5 cut(s) 315, 418, 472, 1065, 1444
HpyCH4III ACNGT 5 cut(s) 207, 469, 505, 584, 1359
HpyCH4IV ACGT 3 cut(s) 259, 674, 791
HpyCH4V TGCA 7 cut(s) 68, 169, 747, 882, 1109, 1205, 1250
HpyF10VI GCNNNNNNNGC 6 cut(s) 166, 401, 675, 744, 866, 1256
HpyF3I CTNAG 5 cut(s) 351, 664, 813, 1586, 1659
HpySE526I ACGT 3 cut(s) 259, 674, 791
HspAI GCGC 2 cut(s) 158, 1389
KroI GCCGGC 1 cut(s) 1607
KroNI GCCGGC 1 cut(s) 1609
KspI CCGCGG 1 cut(s) 801
Kzo9I GATC 7 cut(s) 118, 175, 633, 861, 937, 969, 1376
LguI GCTCTTC 2 cut(s) 605, 722
LmnI GCTCC 4 cut(s) 369, 428, 611, 1377
Lsp1109I GCAGC 4 cut(s) 391, 532, 804, 1394
LweI GCATC 4 cut(s) 346, 564, 717, 1296
MaeI CTAG 3 cut(s) 189, 1034, 1142
MaeII ACGT 3 cut(s) 259, 674, 791
MaeIII GTNAC 7 cut(s) 11, 265, 578, 904, 1019, 1061, 1226
MalI GATC 7 cut(s) 120, 177, 635, 863, 939, 971, 1378
MbiI CCGCTC 2 cut(s) 760, 1583
MboI GATC 7 cut(s) 118, 175, 633, 861, 937, 969, 1376
MfeI CAATTG 1 cut(s) 1146
MflI RGATCY 1 cut(s) 633
MhlI GDGCHC 2 cut(s) 83, 1364
MluCI AATT 8 cut(s) 289, 435, 1038, 1146, 1206, 1380, 1555, 1635
MlyI GAGTC 3 cut(s) 386, 852, 1337
MmeI TCCRAC 1 cut(s) 195
MroNI GCCGGC 1 cut(s) 1607
MroXI GAANNNNTTC 2 cut(s) 199, 716
MseI TTAA 4 cut(s) 252, 1014, 1350, 1518
MslI CAYNNNNRTG 4 cut(s) 126, 767, 887, 1224
MspA1I CMGCKG 2 cut(s) 800, 817
MspI CCGG 7 cut(s) 164, 331, 426, 440, 1575, 1608, 1632
MunI CAATTG 1 cut(s) 1146
Mva1269I GAATGC 3 cut(s) 749, 978, 1200
MvnI CGCG 2 cut(s) 800, 1389
MwoI GCNNNNNNNGC 6 cut(s) 166, 401, 675, 744, 866, 1256
NaeI GCCGGC 1 cut(s) 1609
NdeI CATATG 1 cut(s) 1111
NdeII GATC 7 cut(s) 118, 175, 633, 861, 937, 969, 1376
NgoMIV GCCGGC 1 cut(s) 1607
NlaIV GGNNCC 4 cut(s) 365, 703, 1373, 1579
NmuCI GTSAC 4 cut(s) 904, 1019, 1061, 1226
OliI CACNNNNGTG 2 cut(s) 767, 1224
PagI TCATGA 1 cut(s) 34
PciSI GCTCTTC 2 cut(s) 605, 722
PcsI WCGNNNNNNNCGW 1 cut(s) 453
PctI GAATGC 3 cut(s) 749, 978, 1200
PdiI GCCGGC 1 cut(s) 1609
PdmI GAANNNNTTC 2 cut(s) 199, 716
PfeI GAWTC 4 cut(s) 104, 232, 557, 953
PflMI CCANNNNNTGG 2 cut(s) 891, 1187
PkrI GCNGC 9 cut(s) 406, 522, 671, 737, 759, 799, 819, 1409, 1606
PleI GAGTC 3 cut(s) 385, 851, 1336
PmaCI CACGTG 1 cut(s) 675
PmlI CACGTG 1 cut(s) 675
PpsI GAGTC 3 cut(s) 385, 851, 1336
Ppu21I YACGTR 3 cut(s) 260, 675, 792
PspCI CACGTG 1 cut(s) 675
PspN4I GGNNCC 4 cut(s) 365, 703, 1373, 1579
PspPI GGNCC 1 cut(s) 442
PsrI GAACNNNNNNTAC 2 cut(s) 117, 149
PsuI RGATCY 1 cut(s) 633
PvuII CAGCTG 1 cut(s) 817
RsaI GTAC 5 cut(s) 246, 258, 779, 1337, 1535
RsaNI GTAC 5 cut(s) 245, 257, 778, 1336, 1534
RseI CAYNNNNRTG 4 cut(s) 126, 767, 887, 1224
SacII CCGCGG 1 cut(s) 801
SapI GCTCTTC 2 cut(s) 605, 722
SaqAI TTAA 4 cut(s) 252, 1014, 1350, 1518
SatI GCNGC 9 cut(s) 405, 521, 670, 736, 758, 798, 818, 1408, 1605
Sau3AI GATC 7 cut(s) 118, 175, 633, 861, 937, 969, 1376
Sau96I GGNCC 1 cut(s) 442
SchI GAGTC 3 cut(s) 386, 852, 1337
SduI GDGCHC 2 cut(s) 83, 1364
SfaNI GCATC 4 cut(s) 346, 564, 717, 1296
Sfr303I CCGCGG 1 cut(s) 801
SgrBI CCGCGG 1 cut(s) 801
SmiMI CAYNNNNRTG 4 cut(s) 126, 767, 887, 1224
SnaBI TACGTA 1 cut(s) 260
Sse9I AATT 8 cut(s) 289, 435, 1038, 1146, 1206, 1380, 1555, 1635
SspMI CTAG 3 cut(s) 189, 1034, 1142
TaaI ACNGT 5 cut(s) 207, 469, 505, 584, 1359
TaiI ACGT 3 cut(s) 262, 677, 794
TaqI TCGA 4 cut(s) 560, 1235, 1317, 1626
TasI AATT 8 cut(s) 289, 435, 1038, 1146, 1206, 1380, 1555, 1635
TatI WGTACW 1 cut(s) 1335
TauI GCSGC 5 cut(s) 672, 738, 760, 800, 1607
TfiI GAWTC 4 cut(s) 104, 232, 557, 953
Tru1I TTAA 4 cut(s) 252, 1014, 1350, 1518
Tru9I TTAA 4 cut(s) 252, 1014, 1350, 1518
TscAI CASTG 2 cut(s) 1257, 1569
TseFI GTSAC 4 cut(s) 904, 1019, 1061, 1226
TseI GCWGC 4 cut(s) 404, 520, 817, 1407
Tsp45I GTSAC 4 cut(s) 904, 1019, 1061, 1226
TspDTI ATGAA 8 cut(s) 23, 34, 125, 725, 1231, 1255, 1405, 1531
TspGWI ACGGA 1 cut(s) 578
TspRI CASTG 2 cut(s) 1257, 1569
Van91I CCANNNNNTGG 2 cut(s) 891, 1187
XapI RAATTY 3 cut(s) 435, 1038, 1635
XcmI CCANNNNNNNNNTGG 1 cut(s) 892
XmnI GAANNNNTTC 2 cut(s) 199, 716
XspI CTAG 3 cut(s) 189, 1034, 1142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.